Rw6G037800

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0004900
Physical Location & Seq
Reverse (-)
62082830 .. 62085776
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037800.1

Sequence Viewer

Length: 768 bp
ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGCGAAACTACATCACTTACGCCATGACTCTGCTTCAGGACAAGGGTTCGGATGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAATTGGATCCACCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTTCTACCACTGGAAACAACGAGGCATGTGTCAATGATCGTCATAACACTGTCAAAGAAGGAAGTCAACAAATCTACCATTGGGTACCAGCCCCCATTACCTGCTGAACTGGTGAAGGCATCTGCAGAGATTGATTATGAAGGAGAGGACTCACCTAGTGGCCGTGGCCGTGGCAGAGGAAGGGGAAGGGGGAGGGGGAGGGGCAGGTTCAGAGGAAACAATGGCTTTGTGCCTGAATATGATGATGGAGGTTATGACCGCAGTGGGGGTGATTTCAGGGGTAGGGGCCGTGGTAGAGGACGTAGTTTCCGAGGCCGTGGAAGGGGAGGGTACAATGGGGCCCAGGCTGATGTGCAGCAAGATGGAGGATACAATGAAGAAGCACCTCAAGGTGGCCGTGGTCGTGGCCGTGGCAGGGGAGGATATCGTGGAAGGGGCCGTGGCGGCTATAGGTCTAATGGGCCGATCCAGGCAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

255

Amino Acids

28.11

Weight (kDa)

10.09

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 83 7.9e-22 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 394, 480
Acc65I GGTACC 2 cut(s) 9, 369
AccB1I GGYRCC 2 cut(s) 9, 369
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 1 cut(s) 230
AciI CCGC 2 cut(s) 544, 729
AclWI GGATC 4 cut(s) 12, 237, 250, 745
AcoI YGGCCR 4 cut(s) 445, 451, 679, 691
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 443
AfaI GTAC 3 cut(s) 11, 371, 617
AfiI CCNNNNNNNGG 5 cut(s) 19, 550, 607, 677, 700
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 627, 753
AluBI AGCT 3 cut(s) 167, 196, 761
AluI AGCT 3 cut(s) 167, 196, 761
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 4 cut(s) 12, 237, 250, 745
ApaI GGGCCC 1 cut(s) 628
ApeKI GCWGC 3 cut(s) 640, 758, 761
Asp700I GAANNNNTTC 1 cut(s) 285
Asp718I GGTACC 2 cut(s) 9, 369
AspS9I GGNCC 5 cut(s) 571, 624, 625, 721, 746
AsuHPI GGTGA 4 cut(s) 215, 409, 429, 566
BaeGI GKGCMC 1 cut(s) 628
BamHI GGATCC 1 cut(s) 242
BanI GGYRCC 2 cut(s) 9, 369
BanII GRGCYC 1 cut(s) 628
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 652, 748
BccI CCATC 2 cut(s) 524, 641
BceAI ACGGC 7 cut(s) 432, 438, 558, 585, 666, 678, 708
BciT130I CCWGG 2 cut(s) 629, 755
BciVI GTATCC 1 cut(s) 647
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 2 cut(s) 408, 733
BfuAI ACCTGC 2 cut(s) 394, 480
BfuI GTATCC 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 729
BisI GCNGC 4 cut(s) 641, 730, 759, 762
BlsI GCNGC 4 cut(s) 642, 731, 760, 763
Bme1390I CCNGG 2 cut(s) 629, 755
BmgT120I GGNCC 5 cut(s) 571, 624, 625, 721, 746
BmiI GGNNCC 8 cut(s) 11, 244, 270, 371, 572, 625, 626, 722
BmrFI CCNGG 2 cut(s) 629, 755
BmsI GCATC 2 cut(s) 75, 413
BpiI GAAGAC 1 cut(s) 212
BpuEI CTTGAG 2 cut(s) 296, 657
BsaHI GRCGYC 1 cut(s) 41
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 550, 607, 677, 700
Bse1I ACTGG 3 cut(s) 226, 300, 399
BseBI CCWGG 2 cut(s) 629, 755
BseGI GGATG 2 cut(s) 90, 142
BseLI CCNNNNNNNGG 5 cut(s) 19, 550, 607, 677, 700
BseNI ACTGG 3 cut(s) 226, 300, 399
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 2 cut(s) 652, 748
BsgI GTGCAG 1 cut(s) 659
BshNI GGYRCC 2 cut(s) 9, 369
BslI CCNNNNNNNGG 5 cut(s) 19, 550, 607, 677, 700
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
Bsp120I GGGCCC 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 4 cut(s) 4, 242, 321, 750
BspACI CCGC 2 cut(s) 544, 729
BspLI GGNNCC 8 cut(s) 11, 244, 270, 371, 572, 625, 626, 722
BspMAI CTGCAG 1 cut(s) 412
BspMI ACCTGC 2 cut(s) 394, 480
BspPI GGATC 4 cut(s) 12, 237, 250, 745
BspQI GCTCTTC 1 cut(s) 157
BspT107I GGYRCC 2 cut(s) 9, 369
BsrI ACTGG 3 cut(s) 226, 300, 399
BssMI GATC 4 cut(s) 4, 242, 321, 750
BssNAI GTATAC 1 cut(s) 231
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 76
Bst1107I GTATAC 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 629, 755
Bst4CI ACNGT 2 cut(s) 181, 336
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 41
BstDSI CCRYGG 7 cut(s) 448, 454, 574, 601, 682, 694, 724
BstF5I GGATG 2 cut(s) 90, 142
BstKTI GATC 4 cut(s) 7, 245, 324, 753
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 4 cut(s) 4, 242, 321, 750
BstMWI GCNNNNNNNGC 1 cut(s) 729
BstNI CCWGG 2 cut(s) 629, 755
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 627, 753
BstSFI CTRYAG 2 cut(s) 408, 733
BstSLI GKGCMC 1 cut(s) 628
BstV1I GCAGC 2 cut(s) 652, 748
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 231
BsuI GTATCC 1 cut(s) 647
BtgI CCRYGG 7 cut(s) 448, 454, 574, 601, 682, 694, 724
BtsCI GGATG 2 cut(s) 90, 142
BtsI GCAGTG 1 cut(s) 553
BtsIMutI CAGTG 3 cut(s) 293, 332, 553
BveI ACCTGC 2 cut(s) 394, 480
Cfr13I GGNCC 5 cut(s) 571, 624, 625, 721, 746
CseI GACGC 1 cut(s) 49
Csp6I GTAC 3 cut(s) 10, 370, 616
CviAII CATG 2 cut(s) 109, 311
CviQI GTAC 3 cut(s) 10, 370, 616
DpnI GATC 4 cut(s) 6, 244, 323, 752
DpnII GATC 4 cut(s) 4, 242, 321, 750
DraIII CACNNNGTG 1 cut(s) 443
EaeI YGGCCR 4 cut(s) 445, 451, 679, 691
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 628
Eco32I GATATC 1 cut(s) 710
Eco57I CTGAAG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 624
EcoRII CCWGG 2 cut(s) 627, 753
EcoRV GATATC 1 cut(s) 710
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 2 cut(s) 112, 314
FatI CATG 2 cut(s) 108, 310
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 4 cut(s) 641, 730, 759, 762
FokI GGATG 2 cut(s) 97, 149
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 4 cut(s) 641, 730, 759, 762
FspBI CTAG 1 cut(s) 441
GluI GCNGC 4 cut(s) 641, 730, 759, 762
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 112, 314
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 112, 434
HphI GGTGA 4 cut(s) 215, 409, 429, 566
Hpy166II GTNNAC 2 cut(s) 231, 352
Hpy188I TCNGA 3 cut(s) 136, 497, 596
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 231, 352
HpyAV CCTTC 9 cut(s) 275, 296, 337, 394, 419, 459, 465, 600, 711
HpyCH4III ACNGT 2 cut(s) 181, 336
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 2 cut(s) 410, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 729
HpySE526I ACGT 1 cut(s) 586
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 112, 314
KpnI GGTACC 2 cut(s) 13, 373
Kzo9I GATC 4 cut(s) 4, 242, 321, 750
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 2 cut(s) 652, 748
LweI GCATC 2 cut(s) 75, 413
MaeI CTAG 1 cut(s) 441
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 1 cut(s) 181
MalI GATC 4 cut(s) 6, 244, 323, 752
MboI GATC 4 cut(s) 4, 242, 321, 750
MboII GAAGA 4 cut(s) 174, 212, 219, 674
MfeI CAATTG 2 cut(s) 45, 237
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 5 cut(s) 45, 141, 198, 210, 237
MlyI GAGTC 2 cut(s) 106, 428
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 761
MspR9I CCNGG 2 cut(s) 629, 755
MunI CAATTG 2 cut(s) 45, 237
MvaI CCWGG 2 cut(s) 629, 755
MwoI GCNNNNNNNGC 1 cut(s) 729
NdeII GATC 4 cut(s) 4, 242, 321, 750
NlaIII CATG 2 cut(s) 112, 314
NlaIV GGNNCC 8 cut(s) 11, 244, 270, 371, 572, 625, 626, 722
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 314
PceI AGGCCT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 592
PdmI GAANNNNTTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 4 cut(s) 642, 731, 760, 763
PleI GAGTC 2 cut(s) 106, 428
PpsI GAGTC 2 cut(s) 106, 428
Psp6I CCWGG 2 cut(s) 627, 753
PspGI CCWGG 2 cut(s) 627, 753
PspN4I GGNNCC 8 cut(s) 11, 244, 270, 371, 572, 625, 626, 722
PspOMI GGGCCC 1 cut(s) 624
PspPI GGNCC 5 cut(s) 571, 624, 625, 721, 746
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 3 cut(s) 11, 371, 617
RsaNI GTAC 3 cut(s) 10, 370, 616
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 4 cut(s) 641, 730, 759, 762
Sau3AI GATC 4 cut(s) 4, 242, 321, 750
Sau96I GGNCC 5 cut(s) 571, 624, 625, 721, 746
SchI GAGTC 2 cut(s) 106, 428
ScrFI CCNGG 2 cut(s) 629, 755
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 2 cut(s) 75, 413
SfcI CTRYAG 2 cut(s) 408, 733
SmlI CTYRAG 2 cut(s) 275, 672
SmoI CTYRAG 2 cut(s) 275, 672
Sse9I AATT 5 cut(s) 45, 141, 198, 210, 237
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 2 cut(s) 544, 729
SspMI CTAG 1 cut(s) 441
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 627, 753
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 181, 336
TaiI ACGT 1 cut(s) 589
TaqII GACCGA 1 cut(s) 206
TasI AATT 5 cut(s) 45, 141, 198, 210, 237
TauI GCSGC 1 cut(s) 732
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 3 cut(s) 300, 339, 553
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 640, 758, 761
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 153, 438, 675
TspRI CASTG 3 cut(s) 300, 339, 553
Van91I CCANNNNNTGG 1 cut(s) 19
XceI RCATGY 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.