Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Forward (+)

661896 .. 664986

Gene Structure 3091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1008800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCGCAACTACATCACCTACGCCATGACCCTGCTTCAGGAAAAAGGATCGGATGAAGTTGTGTTCAAGGCCATGGGAAGAGCCATCAACAAGACTGTAACGATTGTGGAGTTAATCAAGAGAAGAATTGTTGGTCTTCATCAGAACACTACAATTGGTTCCACAGACATAACTGATATCTATGAACCTCTTGAGGAAGGCCTTGATACTCTGGAGACAACAAGGCATGTGTCAATGATTGTGATAACTCTGTCAAAGAAGGAAATAAATCAATCCTCCATCGGGTATCAGCCGCCTTTACCCGCCGAGCTTGTGAAGGCATCAACGGAGATTGATTATGAAGGAGAGGGCACAACAAATGGTCGTGGACGTGGACGTGGCAGAGGAAGGGGAAGGTTCAGAGGGAATGGCTTTGTCTCAACTGAATATGACGATGGAGGTTACGACCAGAGTCAGGGTAACTTTAGGGGTAGGGGCCGTGGGAGAGGACGTGGTTTCCGAGGCCGTGGAAGAGGAGGGTACAATGGTCCCCAGTATGATGCTCAGCAAGATGGAGGATACATTGAAGAAGCACCTGCCCAAGGTGGCCGTGGTCGTGGCCGTGGGAGGGGAGGATATCGTGGAAGGGGACGTGGCTATAGGTCAAATGGGCCGATCCAGGCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

224

Amino Acids

24.37

Weight (kDa)

9.93

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	1 - 55	3.7e-17	Alba
Rpp20	PF12328	13 - 82	4.6e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	583
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	583
AciI	CCGC	2 cut(s)	293, 303
AclWI	GGATC	2 cut(s)	55, 649
AcoI	YGGCCR	2 cut(s)	586, 598
AcuI	CTGAAG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	5 cut(s)	37, 282, 454, 581, 607
AgsI	TTSAA	2 cut(s)	67, 566
AjiI	CACGTC	4 cut(s)	371, 377, 491, 632
AjnI	CCWGG	1 cut(s)	657
AluBI	AGCT	2 cut(s)	310, 665
AluI	AGCT	2 cut(s)	310, 665
Alw26I	GTCTC	2 cut(s)	209, 421
AlwI	GGATC	2 cut(s)	55, 649
AoxI	GGCC	7 cut(s)	69, 199, 475, 502, 586, 598, 650
ApeKI	GCWGC	2 cut(s)	662, 665
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	3 cut(s)	475, 527, 650
AsuHPI	GGTGA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	511, 544
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	4 cut(s)	92, 287, 428, 545
BceAI	ACGGC	4 cut(s)	462, 489, 573, 585
BciT130I	CCWGG	1 cut(s)	659
BciVI	GTATCC	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	209, 421
BfmI	CTRYAG	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	3 cut(s)	293, 663, 666
BlpI	GCTNAGC	1 cut(s)	543
BlsI	GCNGC	3 cut(s)	294, 664, 667
Bme1390I	CCNGG	1 cut(s)	659
Bme18I	GGWCC	1 cut(s)	527
BmgBI	CACGTC	4 cut(s)	371, 377, 491, 632
BmgT120I	GGNCC	3 cut(s)	475, 527, 650
BmiI	GGNNCC	3 cut(s)	160, 476, 529
BmrFI	CCNGG	1 cut(s)	659
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	2 cut(s)	329, 529
BmuI	ACTGGG	1 cut(s)	526
BoxI	GACNNNNGTC	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	7 cut(s)	72, 478, 499, 505, 580, 589, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	5 cut(s)	37, 282, 454, 581, 607
Bse1I	ACTGG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	7 cut(s)	72, 478, 499, 505, 580, 589, 601
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	5 cut(s)	37, 282, 454, 581, 607
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	652
BshFI	GGCC	7 cut(s)	71, 201, 477, 504, 588, 600, 652
BslFI	GGGAC	2 cut(s)	513, 642
BslI	CCNNNNNNNGG	5 cut(s)	37, 282, 454, 581, 607
BsmAI	GTCTC	2 cut(s)	209, 421
BsmFI	GGGAC	2 cut(s)	513, 642
BsnI	GGCC	7 cut(s)	71, 201, 477, 504, 588, 600, 652
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	47, 654
Bsp1720I	GCTNAGC	1 cut(s)	543
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	2 cut(s)	293, 303
BspANI	GGCC	7 cut(s)	71, 201, 477, 504, 588, 600, 652
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	3 cut(s)	160, 476, 529
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	2 cut(s)	55, 649
BspQI	GCTCTTC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	7 cut(s)	72, 478, 499, 505, 580, 589, 601
BssMI	GATC	2 cut(s)	47, 654
BssT1I	CCWWGG	2 cut(s)	72, 580
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	2 cut(s)	73, 505
BstDEI	CTNAG	1 cut(s)	543
BstDSI	CCRYGG	5 cut(s)	72, 478, 505, 589, 601
BstENI	CCTNNNNNAGG	2 cut(s)	35, 579
BstF5I	GGATG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	50, 657
BstMAI	GTCTC	2 cut(s)	209, 421
BstMBI	GATC	2 cut(s)	47, 654
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	230
BstPAI	GACNNNNGTC	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	657
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	7 cut(s)	71, 201, 477, 504, 588, 600, 652
BtgI	CCRYGG	5 cut(s)	72, 478, 505, 589, 601
BtrI	CACGTC	4 cut(s)	371, 377, 491, 632
BtsCI	GGATG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	583
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	3 cut(s)	475, 527, 650
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	3 cut(s)	25, 73, 227
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	2 cut(s)	49, 656
DpnII	GATC	2 cut(s)	47, 654
EaeI	YGGCCR	2 cut(s)	586, 598
Eam1104I	CTCTTC	2 cut(s)	73, 505
EarI	CTCTTC	2 cut(s)	73, 505
Eco130I	CCWWGG	2 cut(s)	72, 580
Eco147I	AGGCCT	1 cut(s)	201
Eco32I	GATATC	2 cut(s)	178, 617
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	20
EcoNI	CCTNNNNNAGG	2 cut(s)	35, 579
EcoRII	CCWGG	1 cut(s)	657
EcoRV	GATATC	2 cut(s)	178, 617
EcoT14I	CCWWGG	2 cut(s)	72, 580
ErhI	CCWWGG	2 cut(s)	72, 580
FaeI	CATG	3 cut(s)	28, 76, 230
FaiI	YATR	9 cut(s)	26, 74, 170, 183, 228, 339, 429, 537, 639
FaqI	GGGAC	2 cut(s)	513, 642
FatI	CATG	3 cut(s)	24, 72, 226
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	293, 663, 666
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	293, 663, 666
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	293, 663, 666
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	7 cut(s)	71, 201, 477, 504, 588, 600, 652
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	28, 76, 230
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	451
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	368, 374
Hpy188I	TCNGA	4 cut(s)	52, 144, 401, 500
Hpy188III	TCNNGA	4 cut(s)	38, 118, 191, 212
Hpy8I	GTNNAC	2 cut(s)	368, 374
HpyAV	CCTTC	7 cut(s)	191, 253, 310, 335, 381, 387, 618
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	4 cut(s)	370, 376, 490, 631
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	4 cut(s)	370, 376, 490, 631
Hsp92II	CATG	3 cut(s)	28, 76, 230
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	47, 654
LguI	GCTCTTC	1 cut(s)	73
LpnPI	CCDG	8 cut(s)	23, 44, 197, 440, 461, 545, 588, 644
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	2 cut(s)	329, 529
MaeII	ACGT	4 cut(s)	370, 376, 490, 631
MaeIII	GTNAC	3 cut(s)	97, 440, 458
MalI	GATC	2 cut(s)	49, 656
MboI	GATC	2 cut(s)	47, 654
MboII	GAAGA	5 cut(s)	90, 128, 135, 522, 578
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	2 cut(s)	126, 153
MlyI	GAGTC	1 cut(s)	460
MseI	TTAA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	659
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	47, 654
NlaIII	CATG	3 cut(s)	28, 76, 230
NlaIV	GGNNCC	3 cut(s)	160, 476, 529
NmeAIII	GCCGAG	1 cut(s)	331
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	583
PceI	AGGCCT	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PkrI	GCNGC	3 cut(s)	294, 664, 667
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
PshAI	GACNNNNGTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	160, 476, 529
PspPI	GGNCC	3 cut(s)	475, 527, 650
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	3 cut(s)	293, 663, 666
Sau3AI	GATC	2 cut(s)	47, 654
Sau96I	GGNCC	3 cut(s)	475, 527, 650
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	659
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	2 cut(s)	329, 529
SfcI	CTRYAG	1 cut(s)	637
SinI	GGWCC	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	126, 153
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	293, 303
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	657
StyI	CCWWGG	2 cut(s)	72, 580
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	4 cut(s)	373, 379, 493, 634
TasI	AATT	2 cut(s)	126, 153
TauI	GCSGC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TseI	GCWGC	2 cut(s)	662, 665
TspDTI	ATGAA	4 cut(s)	69, 128, 198, 354
TspGWI	ACGGA	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	527
XagI	CCTNNNNNAGG	2 cut(s)	35, 579
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.