Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015313.1

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Reverse (-)

22262 .. 24125

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015313.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggatcggtaccagagagtggagaagccaagagcagagacgccaattgatgagaatgagattaggattacgagccaagggaggatgcgaaactacatcacttacgccatgactctgcttcaggacaagggttcggacgaaattgttttcaaggctatgggaagagctatcaataagactgtgacgattgtggagctaattaaggttagatgtcttattgtagaagaattgtcggtcgatcttcaccagtatactataattgaatccaccgacaaaactgatacttgggaaccccttgaggaaggtcttctaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

105

Amino Acids

12.21

Weight (kDa)

4.9

Isoelectric Point (pI)

25.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	151, 263
AluBI	AGCT	2 cut(s)	167, 196
AluI	AGCT	2 cut(s)	167, 196
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	306
Asp718I	GGTACC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	11, 291
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	4, 238
BspLI	GGNNCC	2 cut(s)	11, 291
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	4, 238
BssNAI	GTATAC	1 cut(s)	252
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	7, 241
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	2 cut(s)	4, 238
BstMCI	CGRYCG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	299
BstZ17I	GTATAC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	90
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	5 cut(s)	28, 75, 155, 167, 196
CviKI_1	RGCY	5 cut(s)	28, 75, 155, 167, 196
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	2 cut(s)	6, 240
DpnII	GATC	2 cut(s)	4, 238
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	112
FaiI	YATR	5 cut(s)	110, 158, 252, 257, 316
FatI	CATG	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	251
FokI	GGATG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	2 cut(s)	112, 263
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	181
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	112
KpnI	GGTACC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	4, 238
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	3 cut(s)	26, 107, 260
LweI	GCATC	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	6, 240
MboI	GATC	2 cut(s)	4, 238
MboII	GAAGA	4 cut(s)	174, 233, 236, 299
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	5 cut(s)	45, 141, 198, 227, 258
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	2 cut(s)	75, 292
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	1 cut(s)	201
MunI	CAATTG	1 cut(s)	45
NdeII	GATC	2 cut(s)	4, 238
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	2 cut(s)	11, 291
NmuCI	GTSAC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	19
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	11, 291
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	4, 238
SchI	GAGTC	1 cut(s)	106
SetI	ASST	4 cut(s)	169, 198, 207, 307
SfaNI	GCATC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	5 cut(s)	45, 141, 198, 227, 258
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	237
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	5 cut(s)	45, 141, 198, 227, 258
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.