RLG00000011073

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004900
Physical Location & Seq
Forward (+)
6482992 .. 6485156
2165 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011073

Sequence Viewer

Length: 771 bp
ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGAATGCGAAACTACATCACTTACGCCATGACTCTGCTTCAGGACAAGGGTTCGGATGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAATTGGATCCACCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTTCTACCACTGGAGACAACGAGGCATGTGTCAATGATCGTCATAACACTGTCAAAGAAGGAAGTCAACAAATCTACCATTGGGTACCAGCCCCCATTACCTGCTGAACTGGTGAAGGCATCTGCGGAGATTGATTATGAAGGAGAGGACTCACCTAGTGGTCGTGGCCGTGGCCGGGGAAGGGGGAGGGGGAGGGGGAGGGGCAGGTTCAGAGGAAACAATGGCTTTGTGCCAGAATATGATGATGGAGGTTATGACCGCAGTGGGGGTGATTTCAGGGGTAGGGGCCGTGGTAGAGGACGTAGTTTCCGAGGCCGTGGAAGGGGAGGGTACAATGGGGTCCAGGCTGATGTGCAGCAAGATGGAGGATACAATGAAGAAGCACCTCCTCAAGGCGGTCGTGGTCGTGGCCGTGGCAGGGGAGGATATCGTGGAAGGGGCCGTGGCGGCTATAGGTCTAATGGGCCGATCCAGGCAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

257

Amino Acids

28.24

Weight (kDa)

10.09

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 83 8e-22 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 394, 480
Acc65I GGTACC 2 cut(s) 9, 369
AccB1I GGYRCC 2 cut(s) 9, 369
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 1 cut(s) 230
AciI CCGC 4 cut(s) 410, 544, 681, 732
AclWI GGATC 4 cut(s) 12, 237, 250, 748
AcoI YGGCCR 3 cut(s) 451, 457, 694
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 443
AfaI GTAC 3 cut(s) 11, 371, 617
AfiI CCNNNNNNNGG 8 cut(s) 19, 460, 466, 550, 607, 677, 680, 703
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 627, 756
AluBI AGCT 3 cut(s) 167, 196, 764
AluI AGCT 3 cut(s) 167, 196, 764
Alw26I GTCTC 2 cut(s) 32, 293
AlwI GGATC 4 cut(s) 12, 237, 250, 748
AoxI GGCC 8 cut(s) 283, 451, 457, 571, 598, 694, 724, 749
ApeKI GCWGC 3 cut(s) 640, 761, 764
Asp700I GAANNNNTTC 1 cut(s) 285
Asp718I GGTACC 2 cut(s) 9, 369
AspS9I GGNCC 4 cut(s) 571, 625, 724, 749
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 4 cut(s) 215, 409, 429, 566
AvaII GGWCC 1 cut(s) 625
BamHI GGATCC 1 cut(s) 242
BanI GGYRCC 2 cut(s) 9, 369
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 652, 751
BccI CCATC 2 cut(s) 524, 641
BceAI ACGGC 5 cut(s) 438, 558, 585, 681, 711
BciT130I CCWGG 2 cut(s) 629, 758
BciVI GTATCC 1 cut(s) 647
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 2 cut(s) 32, 293
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 736
BfuAI ACCTGC 2 cut(s) 394, 480
BfuI GTATCC 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 732
BisI GCNGC 4 cut(s) 641, 733, 762, 765
BlsI GCNGC 4 cut(s) 642, 734, 763, 766
Bme1390I CCNGG 3 cut(s) 461, 629, 758
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 4 cut(s) 571, 625, 724, 749
BmiI GGNNCC 7 cut(s) 11, 244, 270, 371, 572, 626, 725
BmrFI CCNGG 3 cut(s) 461, 629, 758
BmsI GCATC 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 296, 660
BpuMI CCSGG 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 8 cut(s) 76, 454, 460, 574, 595, 601, 697, 727
Bsc4I CCNNNNNNNGG 8 cut(s) 19, 460, 466, 550, 607, 677, 680, 703
Bse1I ACTGG 3 cut(s) 226, 300, 399
BseBI CCWGG 2 cut(s) 629, 758
BseDI CCNNGG 8 cut(s) 76, 454, 460, 574, 595, 601, 697, 727
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 8 cut(s) 19, 460, 466, 550, 607, 677, 680, 703
BseNI ACTGG 3 cut(s) 226, 300, 399
BseRI GAGGAG 1 cut(s) 663
BseXI GCAGC 2 cut(s) 652, 751
BsgI GTGCAG 1 cut(s) 659
Bsh1285I CGRYCG 1 cut(s) 685
BshFI GGCC 8 cut(s) 285, 453, 459, 573, 600, 696, 726, 751
BshNI GGYRCC 2 cut(s) 9, 369
BsiEI CGRYCG 1 cut(s) 685
BsiSI CCGG 1 cut(s) 460
BslI CCNNNNNNNGG 8 cut(s) 19, 460, 466, 550, 607, 677, 680, 703
BsmAI GTCTC 2 cut(s) 32, 293
BsmBI CGTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 8 cut(s) 285, 453, 459, 573, 600, 696, 726, 751
Bsp143I GATC 4 cut(s) 4, 242, 321, 753
BspACI CCGC 4 cut(s) 410, 544, 681, 732
BspANI GGCC 8 cut(s) 285, 453, 459, 573, 600, 696, 726, 751
BspLI GGNNCC 7 cut(s) 11, 244, 270, 371, 572, 626, 725
BspMI ACCTGC 2 cut(s) 394, 480
BspPI GGATC 4 cut(s) 12, 237, 250, 748
BspQI GCTCTTC 1 cut(s) 157
BspT107I GGYRCC 2 cut(s) 9, 369
BsrI ACTGG 3 cut(s) 226, 300, 399
BssECI CCNNGG 8 cut(s) 76, 454, 460, 574, 595, 601, 697, 727
BssMI GATC 4 cut(s) 4, 242, 321, 753
BssNAI GTATAC 1 cut(s) 231
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 76
Bst1107I GTATAC 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 629, 758
Bst4CI ACNGT 2 cut(s) 181, 336
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 41
BstDSI CCRYGG 5 cut(s) 454, 574, 601, 697, 727
BstENI CCTNNNNNAGG 1 cut(s) 675
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 4 cut(s) 7, 245, 324, 756
BstMAI GTCTC 2 cut(s) 32, 293
BstMBI GATC 4 cut(s) 4, 242, 321, 753
BstMCI CGRYCG 1 cut(s) 685
BstMWI GCNNNNNNNGC 1 cut(s) 732
BstNI CCWGG 2 cut(s) 629, 758
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 3 cut(s) 459, 627, 756
BstSFI CTRYAG 1 cut(s) 736
BstV1I GCAGC 2 cut(s) 652, 751
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 231
BsuI GTATCC 1 cut(s) 647
BsuRI GGCC 8 cut(s) 285, 453, 459, 573, 600, 696, 726, 751
BtgI CCRYGG 5 cut(s) 454, 574, 601, 697, 727
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 553
BtsIMutI CAGTG 3 cut(s) 293, 332, 553
BveI ACCTGC 2 cut(s) 394, 480
Cfr13I GGNCC 4 cut(s) 571, 625, 724, 749
CseI GACGC 1 cut(s) 49
Csp6I GTAC 3 cut(s) 10, 370, 616
CviAII CATG 2 cut(s) 109, 311
CviQI GTAC 3 cut(s) 10, 370, 616
DpnI GATC 4 cut(s) 6, 244, 323, 755
DpnII GATC 4 cut(s) 4, 242, 321, 753
DraIII CACNNNGTG 1 cut(s) 443
EaeI YGGCCR 3 cut(s) 451, 457, 694
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 285
Eco32I GATATC 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 675
EcoRII CCWGG 2 cut(s) 627, 756
EcoRV GATATC 1 cut(s) 713
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 2 cut(s) 112, 314
FatI CATG 2 cut(s) 108, 310
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 4 cut(s) 641, 733, 762, 765
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 641, 733, 762, 765
FspBI CTAG 1 cut(s) 441
GluI GCNGC 4 cut(s) 641, 733, 762, 765
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 8 cut(s) 285, 453, 459, 573, 600, 696, 726, 751
HapII CCGG 1 cut(s) 460
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 112, 314
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 112, 434
HpaII CCGG 1 cut(s) 460
HphI GGTGA 4 cut(s) 215, 409, 429, 566
Hpy166II GTNNAC 2 cut(s) 231, 352
Hpy188I TCNGA 3 cut(s) 136, 497, 596
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 231, 352
HpyAV CCTTC 8 cut(s) 275, 296, 337, 394, 419, 459, 600, 714
HpyCH4III ACNGT 2 cut(s) 181, 336
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 1 cut(s) 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 732
HpySE526I ACGT 1 cut(s) 586
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 112, 314
KpnI GGTACC 2 cut(s) 13, 373
Kzo9I GATC 4 cut(s) 4, 242, 321, 753
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 2 cut(s) 652, 751
LweI GCATC 1 cut(s) 413
MaeI CTAG 1 cut(s) 441
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 1 cut(s) 181
MalI GATC 4 cut(s) 6, 244, 323, 755
MboI GATC 4 cut(s) 4, 242, 321, 753
MboII GAAGA 4 cut(s) 174, 212, 219, 674
MfeI CAATTG 2 cut(s) 45, 237
MflI RGATCY 1 cut(s) 242
MluCI AATT 5 cut(s) 45, 141, 198, 210, 237
MlyI GAGTC 2 cut(s) 106, 428
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 3 cut(s) 461, 629, 758
MunI CAATTG 2 cut(s) 45, 237
Mva1269I GAATGC 1 cut(s) 90
MvaI CCWGG 2 cut(s) 629, 758
MwoI GCNNNNNNNGC 1 cut(s) 732
NciI CCSGG 1 cut(s) 461
NdeII GATC 4 cut(s) 4, 242, 321, 753
NlaIII CATG 2 cut(s) 112, 314
NlaIV GGNNCC 7 cut(s) 11, 244, 270, 371, 572, 626, 725
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 314
PceI AGGCCT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 592
PctI GAATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 4 cut(s) 642, 734, 763, 766
PleI GAGTC 2 cut(s) 106, 428
PpsI GAGTC 2 cut(s) 106, 428
Psp6I CCWGG 2 cut(s) 627, 756
PspGI CCWGG 2 cut(s) 627, 756
PspN4I GGNNCC 7 cut(s) 11, 244, 270, 371, 572, 626, 725
PspPI GGNCC 4 cut(s) 571, 625, 724, 749
PsuI RGATCY 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 3 cut(s) 11, 371, 617
RsaNI GTAC 3 cut(s) 10, 370, 616
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 4 cut(s) 641, 733, 762, 765
Sau3AI GATC 4 cut(s) 4, 242, 321, 753
Sau96I GGNCC 4 cut(s) 571, 625, 724, 749
SchI GAGTC 2 cut(s) 106, 428
ScrFI CCNGG 3 cut(s) 461, 629, 758
SfaNI GCATC 1 cut(s) 413
SfcI CTRYAG 1 cut(s) 736
SinI GGWCC 1 cut(s) 625
SmlI CTYRAG 2 cut(s) 275, 675
SmoI CTYRAG 2 cut(s) 275, 675
Sse9I AATT 5 cut(s) 45, 141, 198, 210, 237
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 4 cut(s) 410, 544, 681, 732
SspMI CTAG 1 cut(s) 441
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 3 cut(s) 459, 627, 756
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 181, 336
TaiI ACGT 1 cut(s) 589
TaqII GACCGA 1 cut(s) 206
TasI AATT 5 cut(s) 45, 141, 198, 210, 237
TauI GCSGC 1 cut(s) 735
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 3 cut(s) 300, 339, 553
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 640, 761, 764
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 153, 438, 675
TspRI CASTG 3 cut(s) 300, 339, 553
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 625
XagI CCTNNNNNAGG 1 cut(s) 675
XceI RCATGY 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.