Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Forward (+)

42366597 .. 42367075

Gene Structure 479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25046

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGCGAAACTACATCACTTATGCCATGACTCTGCTCCAGGCAACTCATGGATATACATGTGTATTATGCTGCTGGTTGTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

56

Amino Acids

6.67

Weight (kDa)

7.73

Isoelectric Point (pI)

21.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	19
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	153
Asp718I	GGTACC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	90
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	109, 131, 141
CviJI	RGCY	2 cut(s)	28, 75
CviKI_1	RGCY	2 cut(s)	28, 75
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco130I	CCWWGG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	3 cut(s)	112, 134, 144
FaiI	YATR	6 cut(s)	105, 110, 132, 138, 142, 151
FatI	CATG	3 cut(s)	108, 130, 140
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	104
HgaI	GACGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	112, 134, 144
HinfI	GANTC	1 cut(s)	112
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	112, 134, 144
KpnI	GGTACC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	4 cut(s)	26, 107, 134, 142
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	1 cut(s)	75
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	112, 134, 144
NlaIV	GGNNCC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	144
PciI	ACATGT	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	155
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PscI	ACATGT	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	122
SfaNI	GCATC	1 cut(s)	75
SgeI	CNNG	9 cut(s)	25, 42, 84, 89, 121, 133, 134, 143, 153
Sse9I	AATT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	76
TasI	AATT	1 cut(s)	45
TseI	GCWGC	1 cut(s)	153
Van91I	CCANNNNNTGG	1 cut(s)	19
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.