Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Forward (+)

351442 .. 353696

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00610.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCGCAACTACATCACCTACGCCTTGACCCTGCTTCAGGAAAAAGGATCGGACGAAATTGTGTTCAAGGCTATGGGAAGAGCCATCAACAAGACTGTAACGATTGTGGAGTTAATCAAGAGAAGAATTGTTGGTCTTCACCAGAACACTACAATTGGATCTACAGACATAACTGATATCTACGAACCCCTTGAGGAAGGCCTTGATACTTTGGAGACAACAAGGCATGTGTCGATGATTGTGATAACACTGTCTAAGAAGGAAATAAATCAATCCTCCATTGGGTATCAGCCACCTTTACCTGCTGAGCTTGTGAAGGCATCAACAGAGATTGATTATGAAGGAGAGGGCACACCAAATGGTCGTGGCCGTGGCCGTGGACGTGGCAGAGGAAGGGGAAGGTTTAGAGGGAATGGCTTTGTCTCAACTGAATATGACGATGGAGGCTACGACCGCAGTCAGGGTAACTTTAGGGGTAGGGGCCGTGGGAGAGGACGTGGTGTGCGAGGCCGTGGAAGAGGAGGGTACAATGGTCCCCAGTTTGATGCTCAGCAAGATGGAGGATACTATGAAGAAGCACCTGCTCAAGGTGGCCGCGGTCGTGGCCGTGGGAGGGGAGGATATCGTGGAAGGGGACGTGGCTATAGGTCAAATGGGCCGATCCAGGCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

226

Amino Acids

24.59

Weight (kDa)

10.1

Isoelectric Point (pI)

24.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	589
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	2 cut(s)	310, 589
AccII	CGCG	1 cut(s)	597
AciI	CCGC	3 cut(s)	454, 595, 597
AclWI	GGATC	3 cut(s)	55, 166, 655
AcoI	YGGCCR	4 cut(s)	367, 373, 592, 604
AcuI	CTGAAG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	5 cut(s)	37, 282, 460, 587, 613
AgsI	TTSAA	1 cut(s)	67
AjiI	CACGTC	3 cut(s)	383, 497, 638
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	2 cut(s)	310, 671
AluI	AGCT	2 cut(s)	310, 671
Alw26I	GTCTC	2 cut(s)	209, 427
AlwI	GGATC	3 cut(s)	55, 166, 655
AoxI	GGCC	8 cut(s)	199, 367, 373, 481, 508, 592, 604, 656
ApeKI	GCWGC	2 cut(s)	668, 671
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	3 cut(s)	481, 533, 656
AsuHPI	GGTGA	2 cut(s)	7, 131
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	517, 550
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	3 cut(s)	92, 434, 551
BceAI	ACGGC	5 cut(s)	354, 360, 468, 495, 591
BciT130I	CCWGG	1 cut(s)	665
BciVI	GTATCC	1 cut(s)	557
BcoDI	GTCTC	2 cut(s)	209, 427
BfmI	CTRYAG	2 cut(s)	162, 643
BfuAI	ACCTGC	2 cut(s)	310, 589
BfuI	GTATCC	1 cut(s)	557
BisI	GCNGC	3 cut(s)	595, 669, 672
BlpI	GCTNAGC	2 cut(s)	306, 549
BlsI	GCNGC	3 cut(s)	596, 670, 673
Bme1390I	CCNGG	1 cut(s)	665
Bme18I	GGWCC	1 cut(s)	533
BmgBI	CACGTC	3 cut(s)	383, 497, 638
BmgT120I	GGNCC	3 cut(s)	481, 533, 656
BmiI	GGNNCC	2 cut(s)	482, 535
BmrFI	CCNGG	1 cut(s)	665
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	2 cut(s)	329, 535
BmuI	ACTGGG	1 cut(s)	532
BoxI	GACNNNNGTC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	128
Bpu1102I	GCTNAGC	2 cut(s)	306, 549
BpuEI	CTTGAG	2 cut(s)	212, 570
BsaJI	CCNNGG	6 cut(s)	370, 376, 484, 511, 595, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	5 cut(s)	37, 282, 460, 587, 613
Bse1I	ACTGG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	6 cut(s)	370, 376, 484, 511, 595, 607
BseLI	CCNNNNNNNGG	5 cut(s)	37, 282, 460, 587, 613
BseMII	CTCAG	2 cut(s)	297, 563
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	658
Bsh1236I	CGCG	1 cut(s)	597
Bsh1285I	CGRYCG	2 cut(s)	454, 601
BshFI	GGCC	8 cut(s)	201, 369, 375, 483, 510, 594, 606, 658
BsiEI	CGRYCG	2 cut(s)	454, 601
BslFI	GGGAC	2 cut(s)	519, 648
BslI	CCNNNNNNNGG	5 cut(s)	37, 282, 460, 587, 613
BsmAI	GTCTC	2 cut(s)	209, 427
BsmFI	GGGAC	2 cut(s)	519, 648
BsnI	GGCC	8 cut(s)	201, 369, 375, 483, 510, 594, 606, 658
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	47, 158, 660
Bsp1720I	GCTNAGC	2 cut(s)	306, 549
BspACI	CCGC	3 cut(s)	454, 595, 597
BspANI	GGCC	8 cut(s)	201, 369, 375, 483, 510, 594, 606, 658
BspCNI	CTCAG	2 cut(s)	298, 562
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	2 cut(s)	482, 535
BspMI	ACCTGC	2 cut(s)	310, 589
BspPI	GGATC	3 cut(s)	55, 166, 655
BspQI	GCTCTTC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	6 cut(s)	370, 376, 484, 511, 595, 607
BssMI	GATC	3 cut(s)	47, 158, 660
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	97, 252
Bst6I	CTCTTC	2 cut(s)	73, 511
BstDEI	CTNAG	3 cut(s)	255, 306, 549
BstDSI	CCRYGG	6 cut(s)	370, 376, 484, 511, 595, 607
BstENI	CCTNNNNNAGG	2 cut(s)	35, 585
BstFNI	CGCG	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	50, 161, 663
BstMAI	GTCTC	2 cut(s)	209, 427
BstMBI	GATC	3 cut(s)	47, 158, 660
BstMCI	CGRYCG	2 cut(s)	454, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	453, 603
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	230
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	663
BstSFI	CTRYAG	2 cut(s)	162, 643
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	1 cut(s)	658
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	8 cut(s)	201, 369, 375, 483, 510, 594, 606, 658
BtgI	CCRYGG	6 cut(s)	370, 376, 484, 511, 595, 607
BtrI	CACGTC	3 cut(s)	383, 497, 638
BtsIMutI	CAGTG	1 cut(s)	248
BveI	ACCTGC	2 cut(s)	310, 589
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	3 cut(s)	481, 533, 656
Cfr42I	CCGCGG	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	1 cut(s)	227
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	3 cut(s)	255, 306, 549
DpnI	GATC	3 cut(s)	49, 160, 662
DpnII	GATC	3 cut(s)	47, 158, 660
EaeI	YGGCCR	4 cut(s)	367, 373, 592, 604
Eam1104I	CTCTTC	2 cut(s)	73, 511
EarI	CTCTTC	2 cut(s)	73, 511
Eco147I	AGGCCT	1 cut(s)	201
Eco32I	GATATC	2 cut(s)	178, 623
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	20
EcoNI	CCTNNNNNAGG	2 cut(s)	35, 585
EcoRII	CCWGG	1 cut(s)	663
EcoRV	GATATC	2 cut(s)	178, 623
FaeI	CATG	1 cut(s)	230
FaiI	YATR	7 cut(s)	74, 170, 228, 339, 435, 570, 645
FaqI	GGGAC	2 cut(s)	519, 648
FatI	CATG	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	595, 669, 672
Fsp4HI	GCNGC	3 cut(s)	595, 669, 672
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	595, 669, 672
HaeIII	GGCC	8 cut(s)	201, 369, 375, 483, 510, 594, 606, 658
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HphI	GGTGA	2 cut(s)	7, 131
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	38, 118
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	7 cut(s)	191, 253, 310, 335, 387, 393, 624
HpyCH4III	ACNGT	2 cut(s)	97, 252
HpyCH4IV	ACGT	3 cut(s)	382, 496, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	453, 603
HpyF3I	CTNAG	3 cut(s)	255, 306, 549
HpySE526I	ACGT	3 cut(s)	382, 496, 637
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	4
KspI	CCGCGG	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	47, 158, 660
LguI	GCTCTTC	1 cut(s)	73
LpnPI	CCDG	8 cut(s)	23, 44, 155, 315, 446, 551, 594, 650
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	2 cut(s)	329, 535
MaeII	ACGT	3 cut(s)	382, 496, 637
MaeIII	GTNAC	2 cut(s)	97, 464
MalI	GATC	3 cut(s)	49, 160, 662
MboI	GATC	3 cut(s)	47, 158, 660
MboII	GAAGA	5 cut(s)	90, 128, 135, 528, 584
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	3 cut(s)	57, 126, 153
MseI	TTAA	1 cut(s)	113
MspA1I	CMGCKG	2 cut(s)	597, 671
MspR9I	CCNGG	1 cut(s)	665
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	453, 603
NdeII	GATC	3 cut(s)	47, 158, 660
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	482, 535
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	230
PaqCI	CACCTGC	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	596, 670, 673
PshAI	GACNNNNGTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	482, 535
PspPI	GGNCC	3 cut(s)	481, 533, 656
PsuI	RGATCY	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SacII	CCGCGG	1 cut(s)	598
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	3 cut(s)	595, 669, 672
Sau3AI	GATC	3 cut(s)	47, 158, 660
Sau96I	GGNCC	3 cut(s)	481, 533, 656
ScrFI	CCNGG	1 cut(s)	665
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	2 cut(s)	329, 535
SfcI	CTRYAG	2 cut(s)	162, 643
Sfr303I	CCGCGG	1 cut(s)	598
SgrBI	CCGCGG	1 cut(s)	598
SinI	GGWCC	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	191, 585
SmoI	CTYRAG	2 cut(s)	191, 585
Sse9I	AATT	3 cut(s)	57, 126, 153
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	3 cut(s)	454, 595, 597
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	97, 252
TaiI	ACGT	3 cut(s)	385, 499, 640
TaqI	TCGA	1 cut(s)	233
TasI	AATT	3 cut(s)	57, 126, 153
TauI	GCSGC	1 cut(s)	597
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	2 cut(s)	668, 671
TspDTI	ATGAA	2 cut(s)	354, 585
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	533
XagI	CCTNNNNNAGG	2 cut(s)	35, 585
XceI	RCATGY	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.