Rh6BG047700

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004900
Physical Location & Seq
Reverse (-)
7887972 .. 7888547
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG047700.1

Sequence Viewer

Length: 255 bp
ATGGATCGGTACCGGAGAGTGGAGAAGCCAAGAGTAGAGACGCCAATTGATGAGAATGAGATTAGGATTATGAGCCAAGGGAGGATGCGAAACTACATCACTTACGCCATGACTCTGCTTCAGGACAAGGGTTCGGACGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGGTTAGATGTCTCATTGTGTATCACTATGCTGGATGGTTATATGTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

84

Amino Acids

10.01

Weight (kDa)

9.41

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 70 9.8e-16 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 2 cut(s) 167, 196
AluI AGCT 2 cut(s) 167, 196
Alw26I GTCTC 2 cut(s) 32, 218
AlwI GGATC 1 cut(s) 12
Asp718I GGTACC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 9
BccI CCATC 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 32, 218
BfaI CTAG 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 2 cut(s) 90, 242
BseLI CCNNNNNNNGG 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 13
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 2 cut(s) 32, 218
BsmBI CGTCTC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 4
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 41
BstF5I GGATG 2 cut(s) 90, 242
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 2 cut(s) 32, 218
BstMBI GATC 1 cut(s) 4
BtsCI GGATG 2 cut(s) 90, 242
CseI GACGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 109
CviJI RGCY 5 cut(s) 28, 75, 155, 167, 196
CviKI_1 RGCY 5 cut(s) 28, 75, 155, 167, 196
CviQI GTAC 1 cut(s) 10
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 112
FaiI YATR 6 cut(s) 71, 110, 158, 231, 244, 246
FatI CATG 1 cut(s) 108
FokI GGATG 2 cut(s) 97, 249
FspBI CTAG 1 cut(s) 253
HapII CCGG 1 cut(s) 13
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 1 cut(s) 112
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 1 cut(s) 112
KpnI GGTACC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 26, 107, 219
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 174
MfeI CAATTG 1 cut(s) 45
MluCI AATT 3 cut(s) 45, 141, 198
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 1 cut(s) 75
MseI TTAA 1 cut(s) 201
MspI CCGG 1 cut(s) 13
MunI CAATTG 1 cut(s) 45
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 157
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 201
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 106
SetI ASST 3 cut(s) 169, 198, 207
SfaNI GCATC 1 cut(s) 75
SgeI CNNG 9 cut(s) 25, 42, 89, 121, 134, 139, 163, 187, 246
Sse9I AATT 3 cut(s) 45, 141, 198
SspMI CTAG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 181
TasI AATT 3 cut(s) 45, 141, 198
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
XspI CTAG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.