Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Forward (+)

33243998 .. 33246768

Gene Structure 2771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G360500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGTGGAGACGCCAATTGATGAGAACGAGATTAGGATTACCAGCCAGGGAAGGATGCGCAACTACATTACTTACGCCATGACCCTGCTTCAGGAAAAAGGATCGGACGAAATTGTATTCAAGGCTATGGGGAGAGCTATCAACAAGACTGTAACAATCGTGGAGTTAATTAAGAGAAGAATTGTTGGTCTTCATCAGAACACTACAATTGGATCTACCGACATAACTGATATATATGAACCCCTTGAGGAAGGCCTCAACACTTTGGAGTCAACAAGGCATGTGTCGATGATTGTGGTAACACTGTCCAAGAAGGAAATAAATACATCTTCTATCGGGTACCAGTCACCTTTACCTGCTGAGCTCGTGAAGGCATCGACAGAGATTGATTATGAAGGAGGGGGCTCACCAAATGGTCGCGGCCGTGGACGTGGACGTGGCAGAGGAAGGGGAAGGTTTAGAGGAAATGGCTTTGTGTCAGCTGAATTTGATGATGGAGGTTACGACCGCAGTCGCAGTAACTTCAGGGGTAGGGGCCGTGGGAGAGGACGTGGTTTCCGAGGCCGTGGAAGGGGAGGGTACAATGGGCCTCAGTTTGATGGACAACAAGATGGAGAGTACAATGAAGAAGCACCTGCTCAAGGTGGCCATGGACGTGGCCGTGGAAGGGGGGGATATCGTGGAAGGGGCCGTGGCTATAGGTCTAATGGGCCGATCCAGGCAACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

254

Amino Acids

27.94

Weight (kDa)

10.18

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc16I	TGCGCA	1 cut(s)	89
Acc36I	ACCTGC	2 cut(s)	394, 673
Acc65I	GGTACC	2 cut(s)	9, 369
AccB1I	GGYRCC	2 cut(s)	9, 369
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccII	CGCG	1 cut(s)	450
AciI	CCGC	2 cut(s)	450, 538
AclWI	GGATC	4 cut(s)	12, 139, 250, 739
AcoI	YGGCCR	3 cut(s)	451, 676, 688
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	2 cut(s)	104, 538
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	4 cut(s)	11, 371, 611, 650
AfiI	CCNNNNNNNGG	5 cut(s)	19, 121, 601, 671, 697
AgsI	TTSAA	1 cut(s)	151
AjiI	CACGTC	4 cut(s)	461, 467, 581, 686
AjnI	CCWGG	2 cut(s)	75, 747
AluBI	AGCT	3 cut(s)	167, 394, 512
AluI	AGCT	3 cut(s)	167, 394, 512
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	4 cut(s)	12, 139, 250, 739
AoxI	GGCC	9 cut(s)	283, 451, 565, 592, 617, 676, 688, 718, 740
ApoI	RAATTY	1 cut(s)	515
Asp718I	GGTACC	2 cut(s)	9, 369
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	4 cut(s)	565, 617, 718, 740
AsuHPI	GGTGA	2 cut(s)	369, 429
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	2 cut(s)	9, 369
BanII	GRGCYC	2 cut(s)	396, 437
BauI	CACGAG	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	3 cut(s)	518, 623, 635
BceAI	ACGGC	5 cut(s)	438, 552, 579, 675, 705
BciT130I	CCWGG	2 cut(s)	77, 749
BcoDI	GTCTC	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	727
BfuAI	ACCTGC	2 cut(s)	394, 673
BisI	GCNGC	1 cut(s)	451
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	77, 749
BmgBI	CACGTC	4 cut(s)	461, 467, 581, 686
BmgT120I	GGNCC	4 cut(s)	565, 617, 718, 740
BmiI	GGNNCC	4 cut(s)	11, 371, 566, 719
BmrFI	CCNGG	2 cut(s)	77, 749
BmsI	GCATC	2 cut(s)	75, 413
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	212
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	296, 654
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	8 cut(s)	76, 454, 568, 589, 595, 679, 691, 721
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 121, 601, 671, 697
Bse1I	ACTGG	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	77, 749
BseDI	CCNNGG	8 cut(s)	76, 454, 568, 589, 595, 679, 691, 721
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	5 cut(s)	19, 121, 601, 671, 697
BseMII	CTCAG	2 cut(s)	381, 635
BseNI	ACTGG	1 cut(s)	373
BseX3I	CGGCCG	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	450
Bsh1285I	CGRYCG	2 cut(s)	454, 538
BshFI	GGCC	9 cut(s)	285, 453, 567, 594, 619, 678, 690, 720, 742
BshNI	GGYRCC	2 cut(s)	9, 369
BsiEI	CGRYCG	2 cut(s)	454, 538
BsiHKAI	GWGCWC	1 cut(s)	396
BslI	CCNNNNNNNGG	5 cut(s)	19, 121, 601, 671, 697
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	9 cut(s)	285, 453, 567, 594, 619, 678, 690, 720, 742
Bsp1286I	GDGCHC	2 cut(s)	396, 437
Bsp143I	GATC	4 cut(s)	4, 131, 242, 744
Bsp1720I	GCTNAGC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	679
BspACI	CCGC	2 cut(s)	450, 538
BspANI	GGCC	9 cut(s)	285, 453, 567, 594, 619, 678, 690, 720, 742
BspCNI	CTCAG	2 cut(s)	382, 634
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	4 cut(s)	11, 371, 566, 719
BspMI	ACCTGC	2 cut(s)	394, 673
BspPI	GGATC	4 cut(s)	12, 139, 250, 739
BspT107I	GGYRCC	2 cut(s)	9, 369
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	8 cut(s)	76, 454, 568, 589, 595, 679, 691, 721
BssMI	GATC	4 cut(s)	4, 131, 242, 744
BssNI	GRCGYC	1 cut(s)	41
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	77, 749
Bst4CI	ACNGT	2 cut(s)	181, 336
BstACI	GRCGYC	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	390, 621
BstDSI	CCRYGG	6 cut(s)	454, 568, 595, 679, 691, 721
BstENI	CCTNNNNNAGG	2 cut(s)	119, 669
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	4 cut(s)	7, 134, 245, 747
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	4 cut(s)	4, 131, 242, 744
BstMCI	CGRYCG	2 cut(s)	454, 538
BstNI	CCWGG	2 cut(s)	77, 749
BstNSI	RCATGY	1 cut(s)	314
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	2 cut(s)	75, 747
BstSFI	CTRYAG	1 cut(s)	727
BstUI	CGCG	1 cut(s)	450
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	242
BstZI	CGGCCG	1 cut(s)	451
BsuRI	GGCC	9 cut(s)	285, 453, 567, 594, 619, 678, 690, 720, 742
BtgI	CCRYGG	6 cut(s)	454, 568, 595, 679, 691, 721
BtrI	CACGTC	4 cut(s)	461, 467, 581, 686
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	332
BveI	ACCTGC	2 cut(s)	394, 673
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	4 cut(s)	565, 617, 718, 740
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	4 cut(s)	10, 370, 610, 649
CviAII	CATG	3 cut(s)	109, 311, 680
CviQI	GTAC	4 cut(s)	10, 370, 610, 649
DdeI	CTNAG	2 cut(s)	390, 621
DpnI	GATC	4 cut(s)	6, 133, 244, 746
DpnII	GATC	4 cut(s)	4, 131, 242, 744
EaeI	YGGCCR	3 cut(s)	451, 676, 688
EagI	CGGCCG	1 cut(s)	451
Ecl136II	GAGCTC	1 cut(s)	394
EclXI	CGGCCG	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	285
Eco24I	GRGCYC	2 cut(s)	396, 437
Eco32I	GATATC	1 cut(s)	707
Eco52I	CGGCCG	1 cut(s)	451
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	2 cut(s)	104, 538
EcoICRI	GAGCTC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	2 cut(s)	119, 669
EcoRII	CCWGG	2 cut(s)	75, 747
EcoRV	GATATC	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	396, 437
ErhI	CCWWGG	1 cut(s)	679
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	3 cut(s)	112, 314, 683
FatI	CATG	3 cut(s)	108, 310, 679
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	2 cut(s)	396, 437
Fsp4HI	GCNGC	1 cut(s)	451
FspI	TGCGCA	1 cut(s)	89
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	451
HaeIII	GGCC	9 cut(s)	285, 453, 567, 594, 619, 678, 690, 720, 742
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	112, 314, 683
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	2 cut(s)	369, 429
Hpy166II	GTNNAC	3 cut(s)	303, 458, 464
Hpy188I	TCNGA	3 cut(s)	136, 228, 590
Hpy188III	TCNNGA	2 cut(s)	122, 397
Hpy8I	GTNNAC	3 cut(s)	303, 458, 464
HpyCH4III	ACNGT	2 cut(s)	181, 336
HpyCH4IV	ACGT	4 cut(s)	460, 466, 580, 685
HpyF3I	CTNAG	2 cut(s)	390, 621
HpySE526I	ACGT	4 cut(s)	460, 466, 580, 685
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	112, 314, 683
HspAI	GCGC	1 cut(s)	88
KpnI	GGTACC	2 cut(s)	13, 373
Kzo9I	GATC	4 cut(s)	4, 131, 242, 744
LweI	GCATC	2 cut(s)	75, 413
MaeII	ACGT	4 cut(s)	460, 466, 580, 685
MaeIII	GTNAC	5 cut(s)	181, 328, 375, 530, 548
MalI	GATC	4 cut(s)	6, 133, 244, 746
MboI	GATC	4 cut(s)	4, 131, 242, 744
MboII	GAAGA	4 cut(s)	212, 219, 351, 668
MfeI	CAATTG	2 cut(s)	45, 237
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	396, 437
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	6 cut(s)	45, 141, 198, 210, 237, 515
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	308
Mox20I	TGGCCA	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	2 cut(s)	197, 201
MslI	CAYNNNNRTG	1 cut(s)	684
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	512
MspR9I	CCNGG	2 cut(s)	77, 749
MunI	CAATTG	2 cut(s)	45, 237
MvaI	CCWGG	2 cut(s)	77, 749
MvnI	CGCG	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	679
NdeII	GATC	4 cut(s)	4, 131, 242, 744
NlaIII	CATG	3 cut(s)	112, 314, 683
NlaIV	GGNNCC	4 cut(s)	11, 371, 566, 719
NmuCI	GTSAC	1 cut(s)	375
NsbI	TGCGCA	1 cut(s)	89
NspI	RCATGY	1 cut(s)	314
PacI	TTAATTAA	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	673
PceI	AGGCCT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	586
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PshAI	GACNNNNGTC	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	75, 747
PspGI	CCWGG	2 cut(s)	75, 747
PspN4I	GGNNCC	4 cut(s)	11, 371, 566, 719
PspPI	GGNCC	4 cut(s)	565, 617, 718, 740
PsuI	RGATCY	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	4 cut(s)	11, 371, 611, 650
RsaNI	GTAC	4 cut(s)	10, 370, 610, 649
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	197, 201
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	4 cut(s)	4, 131, 242, 744
Sau96I	GGNCC	4 cut(s)	565, 617, 718, 740
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	77, 749
SduI	GDGCHC	2 cut(s)	396, 437
SfaNI	GCATC	2 cut(s)	75, 413
SfcI	CTRYAG	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	2 cut(s)	275, 669
SmoI	CTYRAG	2 cut(s)	275, 669
Sse9I	AATT	6 cut(s)	45, 141, 198, 210, 237, 515
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	2 cut(s)	450, 538
SstI	GAGCTC	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	75, 747
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	2 cut(s)	181, 336
TaiI	ACGT	4 cut(s)	463, 469, 583, 688
TaqI	TCGA	2 cut(s)	317, 407
TasI	AATT	6 cut(s)	45, 141, 198, 210, 237, 515
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	453
Tru1I	TTAA	2 cut(s)	197, 201
Tru9I	TTAA	2 cut(s)	197, 201
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	4 cut(s)	212, 282, 438, 669
TspRI	CASTG	1 cut(s)	339
Van91I	CCANNNNNTGG	1 cut(s)	19
XagI	CCTNNNNNAGG	2 cut(s)	119, 669
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.