Rroxscaffold_2G00124790

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004900
Physical Location & Seq
Forward (+)
59237737 .. 59239599
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00124790.1

Sequence Viewer

Length: 339 bp
ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGCGAAACTACATCACTTACGCCATGACTCTGCTGAGTGATGTCTATAGTTTTGGCGTAGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTATACAAGGATGCTAGTAAGACTTCATTCAAGTCCTCAACTCAGTTAGTATATGATGCAAGACTATCCAAAAACTTGGGAAGATTAGAGATGCTCAAGCTTCAATCAAATTTTGTACAAGTACTTTCACTTTTTGTTGGACTAGTCTGTAGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

112

Amino Acids

12.83

Weight (kDa)

9.76

Isoelectric Point (pI)

16.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 61 2.3e-08 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 1 cut(s) 183
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 289
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 3 cut(s) 11, 297, 303
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 3 cut(s) 151, 211, 284
AhlI ACTAGT 1 cut(s) 322
AluBI AGCT 2 cut(s) 167, 280
AluI AGCT 2 cut(s) 167, 280
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 289
Asp718I GGTACC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 32
BcuI ACTAGT 1 cut(s) 322
BfaI CTAG 2 cut(s) 195, 323
BfmI CTRYAG 2 cut(s) 130, 328
BmcAI AGTACT 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 11
BmsI GCATC 4 cut(s) 75, 181, 226, 261
BpuEI CTTGAG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 2 cut(s) 90, 196
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 110, 236
BshNI GGYRCC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
Bsp1407I TGTACA 1 cut(s) 295
Bsp143I GATC 1 cut(s) 4
BspCNI CTCAG 2 cut(s) 111, 235
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 9
BsrGI TGTACA 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 4
BssNAI GTATAC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 76
Bst1107I GTATAC 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 119, 222
BstF5I GGATG 2 cut(s) 90, 196
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 4
BstSFI CTRYAG 2 cut(s) 130, 328
BstXI CCANNNNNNTGG 1 cut(s) 256
BstZ17I GTATAC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 90, 196
CseI GACGC 1 cut(s) 49
Csp6I GTAC 3 cut(s) 10, 296, 302
CviAII CATG 1 cut(s) 109
CviJI RGCY 5 cut(s) 28, 75, 155, 167, 280
CviKI_1 RGCY 5 cut(s) 28, 75, 155, 167, 280
CviQI GTAC 3 cut(s) 10, 296, 302
DdeI CTNAG 2 cut(s) 119, 222
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 112
FaiI YATR 6 cut(s) 110, 132, 158, 184, 232, 234
FatI CATG 1 cut(s) 108
FblI GTMKAC 1 cut(s) 183
FokI GGATG 2 cut(s) 97, 203
FspBI CTAG 2 cut(s) 195, 323
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 119, 222
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 1 cut(s) 112
KpnI GGTACC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 157
LpnPI CCDG 1 cut(s) 26
LweI GCATC 4 cut(s) 75, 181, 226, 261
MaeI CTAG 2 cut(s) 195, 323
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 174, 273
MfeI CAATTG 1 cut(s) 45
MluCI AATT 2 cut(s) 45, 289
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 2 cut(s) 75, 226
MseI TTAA 1 cut(s) 337
MunI CAATTG 1 cut(s) 45
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 19
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 11
RsaI GTAC 3 cut(s) 11, 297, 303
RsaNI GTAC 3 cut(s) 10, 296, 302
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 337
Sau3AI GATC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 303
SchI GAGTC 1 cut(s) 106
SetI ASST 2 cut(s) 169, 282
SfaNI GCATC 4 cut(s) 75, 181, 226, 261
SfcI CTRYAG 2 cut(s) 130, 328
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 322
Sse9I AATT 2 cut(s) 45, 289
SspMI CTAG 2 cut(s) 195, 323
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 181
TasI AATT 2 cut(s) 45, 289
TatI WGTACW 2 cut(s) 295, 301
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TspDTI ATGAA 1 cut(s) 195
Van91I CCANNNNNTGG 1 cut(s) 19
XapI RAATTY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 2 cut(s) 195, 323
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.