Rroxscaffold_7G00164630

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004900
Physical Location & Seq
Forward (+)
6565260 .. 6568135
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164630.1

Sequence Viewer

Length: 792 bp
ATGGATCGTTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGCGAAACTACATCACTTACGCCATGACTCTGCTTCAGGACAAGGGTTCAGACGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTCACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAATTGGATCCACCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTTCTACCACTGGAGACAACGAGGCATGTGTCAATGATCGTCATAACACTGTCAAAGAAGGAAGTCAACAAATCTACCATTGGGTACCAGCCCCCATTACCTGCTGAACTGGTGAAGGCATCTGCGGAGATTGATTATGAAGGAGAGGACTCACCTAGTGGTCGTGGCCGTGGCAGAGGAAGGGGAAGGGGGAGGGGAGGGGAAGGTTCAGAGGAAACAATGGCTTTGTGCCTGAATATGATGATGGAGGTTATGACCGCAGTGGGGTTGATTTCAGGGGTAGGGGCCGTGGTAGAGGACGAAGTTTCCGAGGCCGTGGAAGGGGAGGATACAATGGGGCCCAGGTTGATATGCAGCAAGATGGAGGATATAATGAAGAAGCACCTCCTCAAGGCGGCCGTGGTCGTGGCCGTGGCAGGGGAGGATATCGTGGAAGGGGCCGTGGCGGCTATAGGTCTAATGGGCCGATCCAGGCAGCTGCTTGAGTTGCAATATGGACGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

263

Amino Acids

28.89

Weight (kDa)

5.34

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 83 8.4e-22 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 394
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 1 cut(s) 230
AciI CCGC 4 cut(s) 410, 543, 680, 731
AclWI GGATC 4 cut(s) 12, 237, 250, 747
AcoI YGGCCR 3 cut(s) 451, 681, 693
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 443
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 6 cut(s) 19, 549, 606, 676, 679, 702
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 626, 755
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 3 cut(s) 167, 196, 763
AluI AGCT 3 cut(s) 167, 196, 763
Alw26I GTCTC 2 cut(s) 32, 293
AlwI GGATC 4 cut(s) 12, 237, 250, 747
AoxI GGCC 9 cut(s) 283, 451, 570, 597, 623, 681, 693, 723, 748
ApaI GGGCCC 1 cut(s) 627
ApeKI GCWGC 3 cut(s) 639, 760, 763
Asp700I GAANNNNTTC 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 369
AspS9I GGNCC 5 cut(s) 570, 623, 624, 723, 748
AsuHPI GGTGA 3 cut(s) 215, 409, 429
BaeGI GKGCMC 1 cut(s) 627
BamHI GGATCC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 627
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 651, 750, 772
BccI CCATC 2 cut(s) 523, 640
BceAI ACGGC 6 cut(s) 438, 557, 584, 668, 680, 710
BciT130I CCWGG 2 cut(s) 628, 757
BciVI GTATCC 1 cut(s) 607
BcoDI GTCTC 2 cut(s) 32, 293
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 735
BfuAI ACCTGC 1 cut(s) 394
BfuI GTATCC 1 cut(s) 607
BglI GCCNNNNNGGC 1 cut(s) 731
BisI GCNGC 5 cut(s) 640, 681, 732, 761, 764
BlsI GCNGC 5 cut(s) 641, 682, 733, 762, 765
Bme1390I CCNGG 2 cut(s) 628, 757
BmgT120I GGNCC 5 cut(s) 570, 623, 624, 723, 748
BmiI GGNNCC 7 cut(s) 244, 270, 371, 571, 624, 625, 724
BmrFI CCNGG 2 cut(s) 628, 757
BmsI GCATC 2 cut(s) 75, 413
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 3 cut(s) 296, 659, 788
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 9 cut(s) 76, 454, 573, 594, 600, 626, 684, 696, 726
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 549, 606, 676, 679, 702
Bse1I ACTGG 3 cut(s) 226, 300, 399
BseBI CCWGG 2 cut(s) 628, 757
BseDI CCNNGG 9 cut(s) 76, 454, 573, 594, 600, 626, 684, 696, 726
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 6 cut(s) 19, 549, 606, 676, 679, 702
BseNI ACTGG 3 cut(s) 226, 300, 399
BseRI GAGGAG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 627
BseX3I CGGCCG 1 cut(s) 681
BseXI GCAGC 3 cut(s) 651, 750, 772
Bsh1285I CGRYCG 1 cut(s) 684
BshFI GGCC 9 cut(s) 285, 453, 572, 599, 625, 683, 695, 725, 750
BshNI GGYRCC 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 684
BslI CCNNNNNNNGG 6 cut(s) 19, 549, 606, 676, 679, 702
BsmAI GTCTC 2 cut(s) 32, 293
BsmBI CGTCTC 1 cut(s) 32
BsnI GGCC 9 cut(s) 285, 453, 572, 599, 625, 683, 695, 725, 750
Bsp120I GGGCCC 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 4 cut(s) 4, 242, 321, 752
BspACI CCGC 4 cut(s) 410, 543, 680, 731
BspANI GGCC 9 cut(s) 285, 453, 572, 599, 625, 683, 695, 725, 750
BspLI GGNNCC 7 cut(s) 244, 270, 371, 571, 624, 625, 724
BspMI ACCTGC 1 cut(s) 394
BspPI GGATC 4 cut(s) 12, 237, 250, 747
BspQI GCTCTTC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 369
BsrI ACTGG 3 cut(s) 226, 300, 399
BssECI CCNNGG 9 cut(s) 76, 454, 573, 594, 600, 626, 684, 696, 726
BssMI GATC 4 cut(s) 4, 242, 321, 752
BssNAI GTATAC 1 cut(s) 231
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 76
Bst1107I GTATAC 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 628, 757
Bst4CI ACNGT 2 cut(s) 181, 336
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 41
BstDSI CCRYGG 6 cut(s) 454, 573, 600, 684, 696, 726
BstENI CCTNNNNNAGG 1 cut(s) 674
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 4 cut(s) 7, 245, 324, 755
BstMAI GTCTC 2 cut(s) 32, 293
BstMBI GATC 4 cut(s) 4, 242, 321, 752
BstMCI CGRYCG 1 cut(s) 684
BstMWI GCNNNNNNNGC 2 cut(s) 731, 772
BstNI CCWGG 2 cut(s) 628, 757
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 626, 755
BstSFI CTRYAG 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 627
BstV1I GCAGC 3 cut(s) 651, 750, 772
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 231
BstZI CGGCCG 1 cut(s) 681
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 9 cut(s) 285, 453, 572, 599, 625, 683, 695, 725, 750
BtgI CCRYGG 6 cut(s) 454, 573, 600, 684, 696, 726
BtsCI GGATG 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 3 cut(s) 293, 332, 552
BveI ACCTGC 1 cut(s) 394
Cfr13I GGNCC 5 cut(s) 570, 623, 624, 723, 748
CseI GACGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 370
CviAII CATG 2 cut(s) 109, 311
CviQI GTAC 1 cut(s) 370
DpnI GATC 4 cut(s) 6, 244, 323, 754
DpnII GATC 4 cut(s) 4, 242, 321, 752
DraIII CACNNNGTG 1 cut(s) 443
EaeI YGGCCR 3 cut(s) 451, 681, 693
EagI CGGCCG 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 627
Eco32I GATATC 1 cut(s) 712
Eco52I CGGCCG 1 cut(s) 681
Eco57I CTGAAG 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 674
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 2 cut(s) 626, 755
EcoRV GATATC 1 cut(s) 712
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 2 cut(s) 112, 314
FatI CATG 2 cut(s) 108, 310
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 5 cut(s) 640, 681, 732, 761, 764
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 5 cut(s) 640, 681, 732, 761, 764
FspBI CTAG 1 cut(s) 441
GluI GCNGC 5 cut(s) 640, 681, 732, 761, 764
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 9 cut(s) 285, 453, 572, 599, 625, 683, 695, 725, 750
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 112, 314
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 112, 434
HphI GGTGA 3 cut(s) 215, 409, 429
Hpy166II GTNNAC 2 cut(s) 231, 352
Hpy188I TCNGA 3 cut(s) 136, 496, 595
Hpy188III TCNNGA 2 cut(s) 122, 184
Hpy8I GTNNAC 2 cut(s) 231, 352
HpyCH4III ACNGT 2 cut(s) 181, 336
HpyCH4V TGCA 2 cut(s) 639, 775
HpyF10VI GCNNNNNNNGC 2 cut(s) 731, 772
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 112, 314
KpnI GGTACC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 4, 242, 321, 752
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 3 cut(s) 651, 750, 772
LweI GCATC 2 cut(s) 75, 413
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 8, 181
MalI GATC 4 cut(s) 6, 244, 323, 754
MboI GATC 4 cut(s) 4, 242, 321, 752
MboII GAAGA 4 cut(s) 174, 212, 219, 673
MfeI CAATTG 2 cut(s) 45, 237
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 5 cut(s) 45, 141, 198, 210, 237
MlyI GAGTC 2 cut(s) 106, 428
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 763
MspR9I CCNGG 2 cut(s) 628, 757
MunI CAATTG 2 cut(s) 45, 237
MvaI CCWGG 2 cut(s) 628, 757
MwoI GCNNNNNNNGC 2 cut(s) 731, 772
NdeII GATC 4 cut(s) 4, 242, 321, 752
NlaIII CATG 2 cut(s) 112, 314
NlaIV GGNNCC 7 cut(s) 244, 270, 371, 571, 624, 625, 724
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 314
OliI CACNNNNGTG 1 cut(s) 188
PceI AGGCCT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 5 cut(s) 641, 682, 733, 762, 765
PleI GAGTC 2 cut(s) 106, 428
PpsI GAGTC 2 cut(s) 106, 428
Psp6I CCWGG 2 cut(s) 626, 755
PspGI CCWGG 2 cut(s) 626, 755
PspN4I GGNNCC 7 cut(s) 244, 270, 371, 571, 624, 625, 724
PspOMI GGGCCC 1 cut(s) 623
PspPI GGNCC 5 cut(s) 570, 623, 624, 723, 748
PsuI RGATCY 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 763
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 5 cut(s) 640, 681, 732, 761, 764
Sau3AI GATC 4 cut(s) 4, 242, 321, 752
Sau96I GGNCC 5 cut(s) 570, 623, 624, 723, 748
SchI GAGTC 2 cut(s) 106, 428
ScrFI CCNGG 2 cut(s) 628, 757
SduI GDGCHC 1 cut(s) 627
SfaNI GCATC 2 cut(s) 75, 413
SfcI CTRYAG 1 cut(s) 735
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 3 cut(s) 275, 674, 767
SmoI CTYRAG 3 cut(s) 275, 674, 767
Sse9I AATT 5 cut(s) 45, 141, 198, 210, 237
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 4 cut(s) 410, 543, 680, 731
SspMI CTAG 1 cut(s) 441
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 626, 755
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 181, 336
TaqII GACCGA 1 cut(s) 206
TasI AATT 5 cut(s) 45, 141, 198, 210, 237
TauI GCSGC 2 cut(s) 683, 734
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 3 cut(s) 300, 339, 552
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 639, 760, 763
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 438, 674
TspRI CASTG 3 cut(s) 300, 339, 552
Van91I CCANNNNNTGG 1 cut(s) 19
XagI CCTNNNNNAGG 1 cut(s) 674
XceI RCATGY 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.