RchiOBHm_Chr6g0303561

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004900
Physical Location & Seq
Reverse (-)
63263773 .. 63267030
3258 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27272

Sequence Viewer

Length: 687 bp
ATGCGAAACTACATCACTTACGCCATGACTCTGCTTCAGGACAAGGGTTCGGATGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAATTGGATCCACCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTTCTACCACTGGAAACAACGAGGCATGTGTCAATGATCGTCATAACACTGTCAAAGAAGGAAGTCAACAAATCTACCATTGGGTACCAGCCCCCATTACCTGCTGAACTGGTGAAGGCATCTGCAGAGATTGATTATGAAGGAGAGGACTCACCTAGTGGTCGTGGCCGTGGCAGAGGAAGGGGCAGGGGGAGGGGGAGGGGCAGGTTCAGAGGAAACAATGGCTTTGTGCCTGAATATGATGATGGAGGTTATGACCGCAGTGGGGGTGATTTCAGGGGTAGGGGCCGTGGTAGAGGACGTAGTTTCCGAGGCCGTGGAAGGGGAGGGTACAATGGGGCCCAGGGTGATGTGCAGCAAGATGGAGGATACAATGAAGAGGCACCTCCTCAAGGCGGCCGTGGTCGTGGCCGTGGCAGGGGAGGATATCGTGGAAGGGGCCGTGGCGGCTATAGGTCTAATGGGCCGATCCAGGCAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

228

Amino Acids

24.83

Weight (kDa)

10.19

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 1 - 55 2.5e-18 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 310, 396
Acc65I GGTACC 1 cut(s) 285
AccB1I GGYRCC 2 cut(s) 285, 583
AccI GTMKAC 1 cut(s) 146
AciI CCGC 3 cut(s) 460, 597, 648
AclWI GGATC 3 cut(s) 153, 166, 664
AcoI YGGCCR 3 cut(s) 367, 598, 610
AcuI CTGAAG 1 cut(s) 20
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 2 cut(s) 287, 533
AfiI CCNNNNNNNGG 5 cut(s) 466, 523, 593, 596, 619
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 2 cut(s) 543, 672
AluBI AGCT 3 cut(s) 83, 112, 680
AluI AGCT 3 cut(s) 83, 112, 680
AlwI GGATC 3 cut(s) 153, 166, 664
AoxI GGCC 9 cut(s) 199, 367, 487, 514, 540, 598, 610, 640, 665
ApaI GGGCCC 1 cut(s) 544
ApeKI GCWGC 3 cut(s) 556, 677, 680
Asp700I GAANNNNTTC 1 cut(s) 201
Asp718I GGTACC 1 cut(s) 285
AspS9I GGNCC 5 cut(s) 487, 540, 541, 640, 665
AsuHPI GGTGA 5 cut(s) 131, 325, 345, 482, 560
BaeGI GKGCMC 1 cut(s) 544
BamHI GGATCC 1 cut(s) 158
BanI GGYRCC 2 cut(s) 285, 583
BanII GRGCYC 1 cut(s) 544
BarI GAAGNNNNNNTAC 2 cut(s) 189, 221
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 568, 667
BccI CCATC 2 cut(s) 440, 557
BceAI ACGGC 6 cut(s) 354, 474, 501, 585, 597, 627
BciT130I CCWGG 2 cut(s) 545, 674
BciVI GTATCC 1 cut(s) 563
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 2 cut(s) 324, 652
BfuAI ACCTGC 2 cut(s) 310, 396
BfuI GTATCC 1 cut(s) 563
BglI GCCNNNNNGGC 1 cut(s) 648
BisI GCNGC 5 cut(s) 557, 598, 649, 678, 681
BlsI GCNGC 5 cut(s) 558, 599, 650, 679, 682
Bme1390I CCNGG 2 cut(s) 545, 674
BmgT120I GGNCC 5 cut(s) 487, 540, 541, 640, 665
BmiI GGNNCC 8 cut(s) 160, 186, 287, 488, 541, 542, 585, 641
BmrFI CCNGG 2 cut(s) 545, 674
BmsI GCATC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 128
BpuEI CTTGAG 2 cut(s) 212, 576
BsaJI CCNNGG 9 cut(s) 370, 490, 511, 517, 543, 544, 601, 613, 643
Bsc4I CCNNNNNNNGG 5 cut(s) 466, 523, 593, 596, 619
Bse1I ACTGG 3 cut(s) 142, 216, 315
BseBI CCWGG 2 cut(s) 545, 674
BseDI CCNNGG 9 cut(s) 370, 490, 511, 517, 543, 544, 601, 613, 643
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 5 cut(s) 466, 523, 593, 596, 619
BseNI ACTGG 3 cut(s) 142, 216, 315
BseRI GAGGAG 1 cut(s) 579
BseSI GKGCMC 1 cut(s) 544
BseX3I CGGCCG 1 cut(s) 598
BseXI GCAGC 2 cut(s) 568, 667
BsgI GTGCAG 1 cut(s) 575
Bsh1285I CGRYCG 1 cut(s) 601
BshFI GGCC 9 cut(s) 201, 369, 489, 516, 542, 600, 612, 642, 667
BshNI GGYRCC 2 cut(s) 285, 583
BsiEI CGRYCG 1 cut(s) 601
BslI CCNNNNNNNGG 5 cut(s) 466, 523, 593, 596, 619
BsnI GGCC 9 cut(s) 201, 369, 489, 516, 542, 600, 612, 642, 667
Bsp120I GGGCCC 1 cut(s) 540
Bsp1286I GDGCHC 1 cut(s) 544
Bsp143I GATC 3 cut(s) 158, 237, 669
BspACI CCGC 3 cut(s) 460, 597, 648
BspANI GGCC 9 cut(s) 201, 369, 489, 516, 542, 600, 612, 642, 667
BspLI GGNNCC 8 cut(s) 160, 186, 287, 488, 541, 542, 585, 641
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 2 cut(s) 310, 396
BspPI GGATC 3 cut(s) 153, 166, 664
BspQI GCTCTTC 1 cut(s) 73
BspT107I GGYRCC 2 cut(s) 285, 583
BsrI ACTGG 3 cut(s) 142, 216, 315
BssECI CCNNGG 9 cut(s) 370, 490, 511, 517, 543, 544, 601, 613, 643
BssMI GATC 3 cut(s) 158, 237, 669
BssNAI GTATAC 1 cut(s) 147
Bst1107I GTATAC 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 545, 674
Bst4CI ACNGT 2 cut(s) 97, 252
Bst6I CTCTTC 2 cut(s) 73, 573
BstDSI CCRYGG 6 cut(s) 370, 490, 517, 601, 613, 643
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 3 cut(s) 161, 240, 672
BstMBI GATC 3 cut(s) 158, 237, 669
BstMCI CGRYCG 1 cut(s) 601
BstMWI GCNNNNNNNGC 1 cut(s) 648
BstNI CCWGG 2 cut(s) 545, 674
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 543, 672
BstSFI CTRYAG 2 cut(s) 324, 652
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 568, 667
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BstZ17I GTATAC 1 cut(s) 147
BstZI CGGCCG 1 cut(s) 598
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 9 cut(s) 201, 369, 489, 516, 542, 600, 612, 642, 667
BtgI CCRYGG 6 cut(s) 370, 490, 517, 601, 613, 643
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 3 cut(s) 209, 248, 469
BveI ACCTGC 2 cut(s) 310, 396
Cfr13I GGNCC 5 cut(s) 487, 540, 541, 640, 665
Csp6I GTAC 2 cut(s) 286, 532
CviAII CATG 2 cut(s) 25, 227
CviQI GTAC 2 cut(s) 286, 532
DpnI GATC 3 cut(s) 160, 239, 671
DpnII GATC 3 cut(s) 158, 237, 669
DraIII CACNNNGTG 1 cut(s) 359
EaeI YGGCCR 3 cut(s) 367, 598, 610
EagI CGGCCG 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 73, 573
EarI CTCTTC 2 cut(s) 73, 573
EclXI CGGCCG 1 cut(s) 598
Eco147I AGGCCT 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 544
Eco32I GATATC 1 cut(s) 629
Eco52I CGGCCG 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 20
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 543, 672
EcoRV GATATC 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 544
FaeI CATG 2 cut(s) 28, 230
FatI CATG 2 cut(s) 24, 226
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 5 cut(s) 557, 598, 649, 678, 681
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 544
Fsp4HI GCNGC 5 cut(s) 557, 598, 649, 678, 681
FspBI CTAG 1 cut(s) 357
GluI GCNGC 5 cut(s) 557, 598, 649, 678, 681
HaeIII GGCC 9 cut(s) 201, 369, 489, 516, 542, 600, 612, 642, 667
Hin1II CATG 2 cut(s) 28, 230
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 2 cut(s) 28, 350
HphI GGTGA 5 cut(s) 131, 325, 345, 482, 560
Hpy166II GTNNAC 2 cut(s) 147, 268
Hpy188I TCNGA 3 cut(s) 52, 413, 512
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 147, 268
HpyAV CCTTC 8 cut(s) 191, 212, 253, 310, 335, 375, 516, 630
HpyCH4III ACNGT 2 cut(s) 97, 252
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 2 cut(s) 326, 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 648
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 2 cut(s) 28, 230
KpnI GGTACC 1 cut(s) 289
Kzo9I GATC 3 cut(s) 158, 237, 669
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 2 cut(s) 568, 667
LweI GCATC 1 cut(s) 329
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 160, 239, 671
MboI GATC 3 cut(s) 158, 237, 669
MboII GAAGA 4 cut(s) 90, 128, 135, 590
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 4 cut(s) 57, 114, 126, 153
MlyI GAGTC 2 cut(s) 22, 344
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 680
MspR9I CCNGG 2 cut(s) 545, 674
MunI CAATTG 1 cut(s) 153
MvaI CCWGG 2 cut(s) 545, 674
MwoI GCNNNNNNNGC 1 cut(s) 648
NdeII GATC 3 cut(s) 158, 237, 669
NlaIII CATG 2 cut(s) 28, 230
NlaIV GGNNCC 8 cut(s) 160, 186, 287, 488, 541, 542, 585, 641
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 230
PasI CCCWGGG 1 cut(s) 544
PceI AGGCCT 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 201
PkrI GCNGC 5 cut(s) 558, 599, 650, 679, 682
PleI GAGTC 2 cut(s) 22, 344
PpsI GAGTC 2 cut(s) 22, 344
Psp6I CCWGG 2 cut(s) 543, 672
PspGI CCWGG 2 cut(s) 543, 672
PspN4I GGNNCC 8 cut(s) 160, 186, 287, 488, 541, 542, 585, 641
PspOMI GGGCCC 1 cut(s) 540
PspPI GGNCC 5 cut(s) 487, 540, 541, 640, 665
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 2 cut(s) 287, 533
RsaNI GTAC 2 cut(s) 286, 532
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 5 cut(s) 557, 598, 649, 678, 681
Sau3AI GATC 3 cut(s) 158, 237, 669
Sau96I GGNCC 5 cut(s) 487, 540, 541, 640, 665
SchI GAGTC 2 cut(s) 22, 344
ScrFI CCNGG 2 cut(s) 545, 674
SduI GDGCHC 1 cut(s) 544
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 2 cut(s) 324, 652
SmlI CTYRAG 2 cut(s) 191, 591
SmoI CTYRAG 2 cut(s) 191, 591
Sse9I AATT 4 cut(s) 57, 114, 126, 153
SseBI AGGCCT 1 cut(s) 201
SsiI CCGC 3 cut(s) 460, 597, 648
SspMI CTAG 1 cut(s) 357
StuI AGGCCT 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 543, 672
TaaI ACNGT 2 cut(s) 97, 252
TaiI ACGT 1 cut(s) 505
TaqII GACCGA 1 cut(s) 122
TasI AATT 4 cut(s) 57, 114, 126, 153
TauI GCSGC 2 cut(s) 600, 651
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 3 cut(s) 216, 255, 469
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 3 cut(s) 556, 677, 680
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 69, 354, 591
TspRI CASTG 3 cut(s) 216, 255, 469
XagI CCTNNNNNAGG 1 cut(s) 591
XceI RCATGY 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.