Rh7AG382000

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004900
Physical Location & Seq
Forward (+)
49894599 .. 49895744
1146 bp
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UTR
Exon/CDS
Intron
Rh7AG382000.1

Sequence Viewer

Length: 297 bp
ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCTACTTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGCGAAACTACATCACTTACGCCATGACTCTGCTTCAGGACAAGGGTTCGGACAAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAATTGGATCCATCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTTCTACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

98

Amino Acids

11.43

Weight (kDa)

9.05

Isoelectric Point (pI)

22.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rpp20 PF12328 11 - 93 4.4e-06 Rpp20 subunit of nuclear RNase MRP and P
Alba PF01918 19 - 82 1.3e-21 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 1 cut(s) 230
AclWI GGATC 3 cut(s) 12, 237, 250
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 2 cut(s) 167, 196
AluI AGCT 2 cut(s) 167, 196
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 3 cut(s) 12, 237, 250
AoxI GGCC 1 cut(s) 283
Asp700I GAANNNNTTC 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 215
BamHI GGATCC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 9
BarI GAAGNNNNNNTAC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 212
BccI CCATC 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 295
BmiI GGNNCC 3 cut(s) 11, 244, 270
BmsI GCATC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 226
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 4, 242
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 11, 244, 270
BspPI GGATC 3 cut(s) 12, 237, 250
BspQI GCTCTTC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 4, 242
BssNAI GTATAC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 76
Bst1107I GTATAC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 157
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 2 cut(s) 7, 245
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 4, 242
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 90
CseI GACGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 109
CviJI RGCY 6 cut(s) 28, 75, 155, 167, 196, 285
CviKI_1 RGCY 6 cut(s) 28, 75, 155, 167, 196, 285
CviQI GTAC 1 cut(s) 10
DpnI GATC 2 cut(s) 6, 244
DpnII GATC 2 cut(s) 4, 242
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 112
FaiI YATR 4 cut(s) 110, 158, 231, 254
FatI CATG 1 cut(s) 108
FblI GTMKAC 1 cut(s) 230
FokI GGATG 1 cut(s) 97
FspBI CTAG 1 cut(s) 295
HaeIII GGCC 1 cut(s) 285
HgaI GACGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 112
HinfI GANTC 1 cut(s) 112
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 275, 296
HpyCH4III ACNGT 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
Hsp92II CATG 1 cut(s) 112
KpnI GGTACC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 4, 242
LguI GCTCTTC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 26, 107, 239
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 6, 244
MboI GATC 2 cut(s) 4, 242
MboII GAAGA 3 cut(s) 174, 212, 219
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 242
MluCI AATT 4 cut(s) 141, 198, 210, 237
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 2 cut(s) 75, 271
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 1 cut(s) 201
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeII GATC 2 cut(s) 4, 242
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 3 cut(s) 11, 244, 270
NmuCI GTSAC 1 cut(s) 181
PceI AGGCCT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 19
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 3 cut(s) 11, 244, 270
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 201
Sau3AI GATC 2 cut(s) 4, 242
SchI GAGTC 1 cut(s) 106
SetI ASST 2 cut(s) 169, 198
SfaNI GCATC 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 4 cut(s) 141, 198, 210, 237
SseBI AGGCCT 1 cut(s) 285
SspMI CTAG 1 cut(s) 295
StuI AGGCCT 1 cut(s) 285
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 249
TaqII GACCGA 1 cut(s) 206
TasI AATT 4 cut(s) 141, 198, 210, 237
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.