Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Forward (+)

409775 .. 413655

Gene Structure 3881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1007600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAAGAGAAAAACGAAGCCGTAGAAGAGGGCTCTTTTTTGTGTGGAGCGCTTACTTATCCTTTTTTGAACCACCACCACCACCACCGGGCGGAAGAGATGGATCGGTACCAGAGAGTGGAGAAGCCGAGAGTGGAGACGCCAATCGATGAGAACGAGATTAGGATTACCAGTCAGGGCAGGATGCGCAACTACATCACCTACGCCTTGACCCTGCTTCAGGAAAAAGGATCGGACGAAATTGTGTTCAAGGCTATGGGAAGAGCCATCAACAAGACTGTAACGATTGTGGAGTTAATCAAGAGAAGAATTGTTGGTCTTCACCAGAACACTACAATTGGATCTACAGACATAACTGATATCTACGAACCCCTTGAGGAAGGCCTTGATACTTTGGAGACAACAAGGCATGTGTCGATGATTGTGATAACACTGTCTAAGAAGGAAATAAATCAATCCTCCATCGGGTATCAGCCACCTTTACCTGCTGAGCTTGTGAAGGCATCAACAGAGATTGATTATGAAGGAGAGGGCACACCAAATGGTCGTGGCCGTGGCCGTGGACGTGGCAGAGGAAGGGGGGGAAGGTTTAGAGGGAATGGCTTTGTCTCAACTGAATATGACGATGGAGGTTATGACCGCAGTCAGGGTAACTTTAGGGGTAGGGGCCGTGGGAGAGGACGTGGTGTGCGCGGCCGTGGAAGAGGAGGGTACAATGGTCCCCAGTTTGATGCTCAGCAAGATGGAGGATACTATGAAGAAGCACCTGCTCAAGGTGGCCGCGGTCGTGGCCGTGGGCGGGGAGGATATCGTGGAAGGGGACGTGGCTATAGGTCAAATGGGCCGATCCAGGCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

288

Amino Acids

31.89

Weight (kDa)

9.62

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	52 - 116	2.9e-20	Alba
Rpp20	PF12328	74 - 143	6.1e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	775
Acc16I	TGCGCA	1 cut(s)	188
Acc36I	ACCTGC	2 cut(s)	493, 775
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccII	CGCG	2 cut(s)	693, 783
AciI	CCGC	6 cut(s)	92, 640, 693, 781, 783, 799
AclWI	GGATC	4 cut(s)	111, 238, 349, 841
AcoI	YGGCCR	5 cut(s)	550, 556, 694, 778, 790
AcuI	CTGAAG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	110, 713
AfeI	AGCGCT	1 cut(s)	51
AfiI	CCNNNNNNNGG	8 cut(s)	88, 91, 118, 220, 465, 646, 773, 799
AgsI	TTSAA	2 cut(s)	70, 250
AjiI	CACGTC	3 cut(s)	566, 683, 824
AjnI	CCWGG	1 cut(s)	849
AluBI	AGCT	2 cut(s)	493, 857
AluI	AGCT	2 cut(s)	493, 857
Alw26I	GTCTC	3 cut(s)	131, 392, 613
AlwI	GGATC	4 cut(s)	111, 238, 349, 841
Aor51HI	AGCGCT	1 cut(s)	51
AoxI	GGCC	8 cut(s)	382, 550, 556, 667, 694, 778, 790, 842
ApeKI	GCWGC	2 cut(s)	854, 857
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	3 cut(s)	52, 189, 693
AspS9I	GGNCC	3 cut(s)	667, 719, 842
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	190, 314
AvaII	GGWCC	1 cut(s)	719
BaeGI	GKGCMC	1 cut(s)	536
BaeI	ACNNNNGTAYC	2 cut(s)	703, 736
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	844
BccI	CCATC	5 cut(s)	94, 275, 470, 620, 737
BceAI	ACGGC	6 cut(s)	5, 537, 543, 654, 681, 777
BciT130I	CCWGG	1 cut(s)	851
BciVI	GTATCC	1 cut(s)	743
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	3 cut(s)	131, 392, 613
BfmI	CTRYAG	2 cut(s)	345, 829
BfoI	RGCGCY	1 cut(s)	53
BfuAI	ACCTGC	2 cut(s)	493, 775
BfuI	GTATCC	1 cut(s)	743
BisI	GCNGC	4 cut(s)	694, 781, 855, 858
BlpI	GCTNAGC	2 cut(s)	489, 735
BlsI	GCNGC	4 cut(s)	695, 782, 856, 859
Bme1390I	CCNGG	2 cut(s)	89, 851
Bme18I	GGWCC	1 cut(s)	719
BmgBI	CACGTC	3 cut(s)	566, 683, 824
BmgT120I	GGNCC	3 cut(s)	667, 719, 842
BmiI	GGNNCC	3 cut(s)	110, 668, 721
BmrFI	CCNGG	2 cut(s)	89, 851
BmrI	ACTGGG	1 cut(s)	718
BmsI	GCATC	3 cut(s)	174, 512, 721
BmuI	ACTGGG	1 cut(s)	718
BoxI	GACNNNNGTC	1 cut(s)	642
BpiI	GAAGAC	1 cut(s)	311
Bpu1102I	GCTNAGC	2 cut(s)	489, 735
BpuEI	CTTGAG	2 cut(s)	395, 756
BpuMI	CCSGG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	6 cut(s)	553, 559, 670, 697, 781, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bsc4I	CCNNNNNNNGG	8 cut(s)	88, 91, 118, 220, 465, 646, 773, 799
Bse1I	ACTGG	2 cut(s)	171, 724
BseBI	CCWGG	1 cut(s)	851
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	6 cut(s)	553, 559, 670, 697, 781, 793
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	8 cut(s)	88, 91, 118, 220, 465, 646, 773, 799
BseMII	CTCAG	2 cut(s)	480, 749
BseNI	ACTGG	2 cut(s)	171, 724
BseRI	GAGGAG	1 cut(s)	720
BseSI	GKGCMC	1 cut(s)	536
BseX3I	CGGCCG	1 cut(s)	694
BseXI	GCAGC	1 cut(s)	844
Bsh1236I	CGCG	2 cut(s)	693, 783
Bsh1285I	CGRYCG	2 cut(s)	697, 787
BshFI	GGCC	8 cut(s)	384, 552, 558, 669, 696, 780, 792, 844
BshNI	GGYRCC	1 cut(s)	108
BshVI	ATCGAT	1 cut(s)	147
BsiEI	CGRYCG	2 cut(s)	697, 787
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	2 cut(s)	705, 834
BslI	CCNNNNNNNGG	8 cut(s)	88, 91, 118, 220, 465, 646, 773, 799
BsmAI	GTCTC	3 cut(s)	131, 392, 613
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	705, 834
BsnI	GGCC	8 cut(s)	384, 552, 558, 669, 696, 780, 792, 844
Bsp1286I	GDGCHC	2 cut(s)	35, 536
Bsp143I	GATC	4 cut(s)	103, 230, 341, 846
Bsp1720I	GCTNAGC	2 cut(s)	489, 735
BspACI	CCGC	6 cut(s)	92, 640, 693, 781, 783, 799
BspANI	GGCC	8 cut(s)	384, 552, 558, 669, 696, 780, 792, 844
BspCNI	CTCAG	2 cut(s)	481, 748
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	2 cut(s)	693, 783
BspLI	GGNNCC	3 cut(s)	110, 668, 721
BspMI	ACCTGC	2 cut(s)	493, 775
BspPI	GGATC	4 cut(s)	111, 238, 349, 841
BspQI	GCTCTTC	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	171, 724
BssECI	CCNNGG	6 cut(s)	553, 559, 670, 697, 781, 793
BssMI	GATC	4 cut(s)	103, 230, 341, 846
BssNI	GRCGYC	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	2 cut(s)	280, 435
Bst6I	CTCTTC	4 cut(s)	21, 90, 256, 697
BstACI	GRCGYC	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	438, 489, 735
BstDSI	CCRYGG	6 cut(s)	553, 559, 670, 697, 781, 793
BstENI	CCTNNNNNAGG	2 cut(s)	218, 771
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	2 cut(s)	693, 783
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	3 cut(s)	52, 189, 693
BstKTI	GATC	4 cut(s)	106, 233, 344, 849
BstMAI	GTCTC	3 cut(s)	131, 392, 613
BstMBI	GATC	4 cut(s)	103, 230, 341, 846
BstMCI	CGRYCG	2 cut(s)	697, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 789
BstNI	CCWGG	1 cut(s)	851
BstNSI	RCATGY	1 cut(s)	413
BstPAI	GACNNNNGTC	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	87, 849
BstSFI	CTRYAG	2 cut(s)	345, 829
BstSLI	GKGCMC	1 cut(s)	536
BstUI	CGCG	2 cut(s)	693, 783
BstV1I	GCAGC	1 cut(s)	844
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BstZI	CGGCCG	1 cut(s)	694
Bsu15I	ATCGAT	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	743
BsuRI	GGCC	8 cut(s)	384, 552, 558, 669, 696, 780, 792, 844
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	6 cut(s)	553, 559, 670, 697, 781, 793
BtrI	CACGTC	3 cut(s)	566, 683, 824
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	2 cut(s)	493, 775
CfoI	GCGC	3 cut(s)	52, 189, 693
Cfr13I	GGNCC	3 cut(s)	667, 719, 842
Cfr42I	CCGCGG	1 cut(s)	784
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	109, 712
CviAII	CATG	1 cut(s)	410
CviQI	GTAC	2 cut(s)	109, 712
DdeI	CTNAG	3 cut(s)	438, 489, 735
DpnI	GATC	4 cut(s)	105, 232, 343, 848
DpnII	GATC	4 cut(s)	103, 230, 341, 846
EaeI	YGGCCR	5 cut(s)	550, 556, 694, 778, 790
EagI	CGGCCG	1 cut(s)	694
Eam1104I	CTCTTC	4 cut(s)	21, 90, 256, 697
EarI	CTCTTC	4 cut(s)	21, 90, 256, 697
EciI	GGCGGA	1 cut(s)	107
EclXI	CGGCCG	1 cut(s)	694
Eco147I	AGGCCT	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	35
Eco32I	GATATC	2 cut(s)	361, 809
Eco47I	GGWCC	1 cut(s)	719
Eco47III	AGCGCT	1 cut(s)	51
Eco52I	CGGCCG	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	203
EcoNI	CCTNNNNNAGG	2 cut(s)	218, 771
EcoRII	CCWGG	1 cut(s)	849
EcoRV	GATATC	2 cut(s)	361, 809
EcoT38I	GRGCYC	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	1 cut(s)	413
FaiI	YATR	8 cut(s)	257, 353, 411, 522, 621, 636, 756, 831
FaqI	GGGAC	2 cut(s)	705, 834
FatI	CATG	1 cut(s)	409
FauI	CCCGC	1 cut(s)	792
Fnu4HI	GCNGC	4 cut(s)	694, 781, 855, 858
FokI	GGATG	1 cut(s)	196
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	4 cut(s)	694, 781, 855, 858
FspI	TGCGCA	1 cut(s)	188
GlaI	GCGC	3 cut(s)	51, 188, 692
GluI	GCNGC	4 cut(s)	694, 781, 855, 858
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	8 cut(s)	384, 552, 558, 669, 696, 780, 792, 844
HapII	CCGG	1 cut(s)	88
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	3 cut(s)	52, 189, 693
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	3 cut(s)	50, 187, 691
HinP1I	GCGC	3 cut(s)	50, 187, 691
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	2 cut(s)	190, 314
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	221, 301
Hpy8I	GTNNAC	1 cut(s)	563
HpyAV	CCTTC	7 cut(s)	374, 436, 493, 518, 570, 579, 810
HpyCH4III	ACNGT	2 cut(s)	280, 435
HpyCH4IV	ACGT	3 cut(s)	565, 682, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 789
HpyF3I	CTNAG	3 cut(s)	438, 489, 735
HpySE526I	ACGT	3 cut(s)	565, 682, 823
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	3 cut(s)	50, 187, 691
KpnI	GGTACC	1 cut(s)	112
KspI	CCGCGG	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	103, 230, 341, 846
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	844
LweI	GCATC	3 cut(s)	174, 512, 721
MaeII	ACGT	3 cut(s)	565, 682, 823
MaeIII	GTNAC	2 cut(s)	280, 650
MalI	GATC	4 cut(s)	105, 232, 343, 848
MboI	GATC	4 cut(s)	103, 230, 341, 846
MboII	GAAGA	7 cut(s)	38, 107, 273, 311, 318, 714, 770
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	2 cut(s)	35, 536
MluCI	AATT	3 cut(s)	240, 309, 336
MseI	TTAA	1 cut(s)	296
MspA1I	CMGCKG	2 cut(s)	783, 857
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	2 cut(s)	89, 851
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	2 cut(s)	693, 783
MwoI	GCNNNNNNNGC	2 cut(s)	186, 789
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	4 cut(s)	103, 230, 341, 846
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	3 cut(s)	110, 668, 721
NmeAIII	GCCGAG	1 cut(s)	153
NsbI	TGCGCA	1 cut(s)	188
NspI	RCATGY	1 cut(s)	413
PaqCI	CACCTGC	1 cut(s)	775
PceI	AGGCCT	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	695, 782, 856, 859
PshAI	GACNNNNGTC	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	3 cut(s)	110, 668, 721
PspPI	GGNCC	3 cut(s)	667, 719, 842
PsuI	RGATCY	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	2 cut(s)	110, 713
RsaNI	GTAC	2 cut(s)	109, 712
SacII	CCGCGG	1 cut(s)	784
SapI	GCTCTTC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	694, 781, 855, 858
Sau3AI	GATC	4 cut(s)	103, 230, 341, 846
Sau96I	GGNCC	3 cut(s)	667, 719, 842
ScrFI	CCNGG	2 cut(s)	89, 851
SduI	GDGCHC	2 cut(s)	35, 536
SfaNI	GCATC	3 cut(s)	174, 512, 721
SfcI	CTRYAG	2 cut(s)	345, 829
Sfr303I	CCGCGG	1 cut(s)	784
SgrBI	CCGCGG	1 cut(s)	784
SinI	GGWCC	1 cut(s)	719
SmlI	CTYRAG	2 cut(s)	374, 771
SmoI	CTYRAG	2 cut(s)	374, 771
Sse9I	AATT	3 cut(s)	240, 309, 336
SseBI	AGGCCT	1 cut(s)	384
SsiI	CCGC	6 cut(s)	92, 640, 693, 781, 783, 799
StuI	AGGCCT	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	87, 849
TaaI	ACNGT	2 cut(s)	280, 435
TaiI	ACGT	3 cut(s)	568, 685, 826
TaqI	TCGA	2 cut(s)	147, 416
TasI	AATT	3 cut(s)	240, 309, 336
TauI	GCSGC	2 cut(s)	696, 783
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	2 cut(s)	854, 857
TspDTI	ATGAA	3 cut(s)	17, 537, 771
TspRI	CASTG	1 cut(s)	438
Van91I	CCANNNNNTGG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	719
XagI	CCTNNNNNAGG	2 cut(s)	218, 771
XceI	RCATGY	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.