Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000756.1

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Reverse (-)

19865 .. 20552

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000756.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggatcggtaccagagagtggagaagccaagagcagaaacgccaattgatgagaatgagattaggattacgagccaagggaggatgcgaaactacatcacttacgccatgactctgcttcaggacaagggttcggatgaaattgttttcaaggctatgggaagagctatcaacaagactgtgacgattgtggagaaaattaaggttagatgtctcattgtgtatcattatgctggatggttatatgttcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

84

Amino Acids

9.94

Weight (kDa)

9.37

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	19
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	12
Asp718I	GGTACC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	9
BccI	CCATC	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	11
BmsI	GCATC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	3 cut(s)	90, 142, 242
BseLI	CCNNNNNNNGG	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	157
BstF5I	GGATG	3 cut(s)	90, 142, 242
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	4
BtsCI	GGATG	3 cut(s)	90, 142, 242
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	4 cut(s)	28, 75, 155, 167
CviKI_1	RGCY	4 cut(s)	28, 75, 155, 167
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	112
FaiI	YATR	5 cut(s)	110, 158, 231, 244, 246
FatI	CATG	1 cut(s)	108
FokI	GGATG	3 cut(s)	97, 149, 249
FspBI	CTAG	1 cut(s)	253
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	112
KpnI	GGTACC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	157
LpnPI	CCDG	3 cut(s)	26, 107, 219
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	174
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	3 cut(s)	45, 141, 198
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	201
MunI	CAATTG	1 cut(s)	45
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	157
PflMI	CCANNNNNTGG	1 cut(s)	19
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	106
SetI	ASST	2 cut(s)	169, 207
SfaNI	GCATC	1 cut(s)	75
Sse9I	AATT	3 cut(s)	45, 141, 198
SspMI	CTAG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	181
TasI	AATT	3 cut(s)	45, 141, 198
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	153
Van91I	CCANNNNNTGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.