Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Forward (+)

146312 .. 150778

Gene Structure 4467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggagttgaggcatagtcaattgcacggcttccgcggcgtaaaagaaaaacgaagccgtagaagagggctcttttttgtgtggagcactacttatccgtttttgaacttcacgatggatcggtaccagagagtggagaagccaagagcagagacgccaattgatgagaatgagattaggattacgagccaagggaggatgcgaaactacatcacttacgccatgactctgcttcaggacaagggttcggatgaaattgttttcaaggctatgggaagagctatcaacaagactgtgacgattgtggagctaattaagagaagaattgtcggtcttcaccagtatactacaattggatccaccgacataactgatacttgggaaccccttgaggaaggccttctaccactggaaacaacgaggcatgtgtcaatgatcgtcataacactgtcaaagaaggaagtcaacaaatctaccattgggtaccagcccccattacctgctgaactggtgaaggcatctgcagagattgattatgaaggagaggactcacctagtggtcgtggccgtggcagaggaaggggaagggggagggggaggggcaggttcagaggaaacaatggctttgtgcctgaatatgatgatggaggttatgaccgcagtgggggtgatttcaggggtaggggccgtggtagaggacgtagtttccgaggccgtggaaggggagggtacaatggggcccaggctgatgtgcagcaagatggaggatacaatgaagaagcacctcaaggcggccgtggtcgtggccgtggcaggggaggatatcgtggaaggggccgtggcggctataggtctaatgggccgatccaggcagctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

293

Amino Acids

32.78

Weight (kDa)

10.39

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	508, 594
Acc65I	GGTACC	2 cut(s)	123, 483
AccB1I	GGYRCC	2 cut(s)	123, 483
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	344
AccII	CGCG	1 cut(s)	36
AciI	CCGC	5 cut(s)	34, 36, 658, 792, 843
AclWI	GGATC	4 cut(s)	126, 351, 364, 859
AcoI	YGGCCR	3 cut(s)	565, 793, 805
AcuI	CTGAAG	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	155
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	3 cut(s)	125, 485, 731
AfiI	CCNNNNNNNGG	5 cut(s)	133, 664, 721, 791, 814
AgsI	TTSAA	2 cut(s)	106, 265
AjnI	CCWGG	2 cut(s)	741, 867
AluBI	AGCT	3 cut(s)	281, 310, 875
AluI	AGCT	3 cut(s)	281, 310, 875
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	4 cut(s)	126, 351, 364, 859
AoxI	GGCC	9 cut(s)	397, 565, 685, 712, 738, 793, 805, 835, 860
ApaI	GGGCCC	1 cut(s)	742
ApeKI	GCWGC	3 cut(s)	754, 872, 875
Asp700I	GAANNNNTTC	1 cut(s)	399
Asp718I	GGTACC	2 cut(s)	123, 483
AspS9I	GGNCC	5 cut(s)	685, 738, 739, 835, 860
AsuHPI	GGTGA	4 cut(s)	329, 523, 543, 680
BaeGI	GKGCMC	1 cut(s)	742
BamHI	GGATCC	1 cut(s)	356
BanI	GGYRCC	2 cut(s)	123, 483
BanII	GRGCYC	2 cut(s)	72, 742
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	766, 862
BccI	CCATC	3 cut(s)	109, 638, 755
BceAI	ACGGC	8 cut(s)	42, 43, 552, 672, 699, 780, 792, 822
BciT130I	CCWGG	2 cut(s)	743, 869
BciVI	GTATCC	1 cut(s)	761
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	2 cut(s)	522, 847
BfuAI	ACCTGC	2 cut(s)	508, 594
BfuI	GTATCC	1 cut(s)	761
BglI	GCCNNNNNGGC	1 cut(s)	843
BisI	GCNGC	6 cut(s)	37, 755, 793, 844, 873, 876
BlsI	GCNGC	6 cut(s)	38, 756, 794, 845, 874, 877
Bme1390I	CCNGG	2 cut(s)	743, 869
BmgT120I	GGNCC	5 cut(s)	685, 738, 739, 835, 860
BmiI	GGNNCC	8 cut(s)	125, 358, 384, 485, 686, 739, 740, 836
BmrFI	CCNGG	2 cut(s)	743, 869
BmsI	GCATC	2 cut(s)	189, 527
BpiI	GAAGAC	1 cut(s)	326
BpuEI	CTTGAG	2 cut(s)	410, 771
BsaHI	GRCGYC	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 664, 721, 791, 814
Bse1I	ACTGG	3 cut(s)	340, 414, 513
BseBI	CCWGG	2 cut(s)	743, 869
BseGI	GGATG	2 cut(s)	204, 256
BseLI	CCNNNNNNNGG	5 cut(s)	133, 664, 721, 791, 814
BseNI	ACTGG	3 cut(s)	340, 414, 513
BseSI	GKGCMC	1 cut(s)	742
BseX3I	CGGCCG	1 cut(s)	793
BseXI	GCAGC	2 cut(s)	766, 862
BsgI	GTGCAG	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	796
BshFI	GGCC	9 cut(s)	399, 567, 687, 714, 740, 795, 807, 837, 862
BshNI	GGYRCC	2 cut(s)	123, 483
BsiEI	CGRYCG	1 cut(s)	796
BsiHKAI	GWGCWC	1 cut(s)	89
BslI	CCNNNNNNNGG	5 cut(s)	133, 664, 721, 791, 814
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	9 cut(s)	399, 567, 687, 714, 740, 795, 807, 837, 862
Bsp120I	GGGCCC	1 cut(s)	738
Bsp1286I	GDGCHC	3 cut(s)	72, 89, 742
Bsp143I	GATC	4 cut(s)	118, 356, 435, 864
BspACI	CCGC	5 cut(s)	34, 36, 658, 792, 843
BspANI	GGCC	9 cut(s)	399, 567, 687, 714, 740, 795, 807, 837, 862
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	8 cut(s)	125, 358, 384, 485, 686, 739, 740, 836
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	2 cut(s)	508, 594
BspPI	GGATC	4 cut(s)	126, 351, 364, 859
BspQI	GCTCTTC	1 cut(s)	271
BspT107I	GGYRCC	2 cut(s)	123, 483
BsrI	ACTGG	3 cut(s)	340, 414, 513
BssMI	GATC	4 cut(s)	118, 356, 435, 864
BssNAI	GTATAC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	190
Bst1107I	GTATAC	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	743, 869
Bst4CI	ACNGT	2 cut(s)	295, 450
Bst6I	CTCTTC	2 cut(s)	58, 271
BstACI	GRCGYC	1 cut(s)	155
BstDSI	CCRYGG	7 cut(s)	34, 568, 688, 715, 796, 808, 838
BstF5I	GGATG	2 cut(s)	204, 256
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	121, 359, 438, 867
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	118, 356, 435, 864
BstMCI	CGRYCG	1 cut(s)	796
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 843
BstNI	CCWGG	2 cut(s)	743, 869
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	2 cut(s)	741, 867
BstSFI	CTRYAG	2 cut(s)	522, 847
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	766, 862
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BstZ17I	GTATAC	1 cut(s)	345
BstZI	CGGCCG	1 cut(s)	793
BsuI	GTATCC	1 cut(s)	761
BsuRI	GGCC	9 cut(s)	399, 567, 687, 714, 740, 795, 807, 837, 862
BtgI	CCRYGG	7 cut(s)	34, 568, 688, 715, 796, 808, 838
BtsCI	GGATG	2 cut(s)	204, 256
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	3 cut(s)	407, 446, 667
BveI	ACCTGC	2 cut(s)	508, 594
Cfr13I	GGNCC	5 cut(s)	685, 738, 739, 835, 860
Cfr42I	CCGCGG	1 cut(s)	37
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	124, 484, 730
CviAII	CATG	2 cut(s)	223, 425
CviQI	GTAC	3 cut(s)	124, 484, 730
DpnI	GATC	4 cut(s)	120, 358, 437, 866
DpnII	GATC	4 cut(s)	118, 356, 435, 864
DraIII	CACNNNGTG	1 cut(s)	557
EaeI	YGGCCR	3 cut(s)	565, 793, 805
EagI	CGGCCG	1 cut(s)	793
Eam1104I	CTCTTC	2 cut(s)	58, 271
EarI	CTCTTC	2 cut(s)	58, 271
EclXI	CGGCCG	1 cut(s)	793
Eco130I	CCWWGG	1 cut(s)	190
Eco147I	AGGCCT	1 cut(s)	399
Eco24I	GRGCYC	2 cut(s)	72, 742
Eco32I	GATATC	1 cut(s)	824
Eco52I	CGGCCG	1 cut(s)	793
Eco57I	CTGAAG	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	738
EcoRII	CCWGG	2 cut(s)	741, 867
EcoRV	GATATC	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	2 cut(s)	72, 742
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	2 cut(s)	226, 428
FatI	CATG	2 cut(s)	222, 424
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	6 cut(s)	37, 755, 793, 844, 873, 876
FokI	GGATG	2 cut(s)	211, 263
FriOI	GRGCYC	2 cut(s)	72, 742
Fsp4HI	GCNGC	6 cut(s)	37, 755, 793, 844, 873, 876
FspBI	CTAG	1 cut(s)	555
GluI	GCNGC	6 cut(s)	37, 755, 793, 844, 873, 876
HaeIII	GGCC	9 cut(s)	399, 567, 687, 714, 740, 795, 807, 837, 862
HgaI	GACGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	226, 428
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	226, 548
HphI	GGTGA	4 cut(s)	329, 523, 543, 680
Hpy166II	GTNNAC	2 cut(s)	345, 466
Hpy188I	TCNGA	3 cut(s)	250, 611, 710
Hpy188III	TCNNGA	2 cut(s)	112, 236
Hpy8I	GTNNAC	2 cut(s)	345, 466
HpyAV	CCTTC	9 cut(s)	389, 410, 451, 508, 533, 573, 579, 714, 825
HpyCH4III	ACNGT	2 cut(s)	295, 450
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	3 cut(s)	25, 524, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 843
HpySE526I	ACGT	1 cut(s)	700
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	226, 428
KpnI	GGTACC	2 cut(s)	127, 487
KspI	CCGCGG	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	118, 356, 435, 864
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	84, 307
Lsp1109I	GCAGC	2 cut(s)	766, 862
LweI	GCATC	2 cut(s)	189, 527
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	4 cut(s)	120, 358, 437, 866
MboI	GATC	4 cut(s)	118, 356, 435, 864
MboII	GAAGA	5 cut(s)	75, 288, 326, 333, 788
MfeI	CAATTG	3 cut(s)	20, 159, 351
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	3 cut(s)	72, 89, 742
MluCI	AATT	6 cut(s)	20, 159, 255, 312, 324, 351
MlyI	GAGTC	2 cut(s)	220, 542
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	2 cut(s)	36, 875
MspR9I	CCNGG	2 cut(s)	743, 869
MunI	CAATTG	3 cut(s)	20, 159, 351
MvaI	CCWGG	2 cut(s)	743, 869
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	36, 843
NdeII	GATC	4 cut(s)	118, 356, 435, 864
NlaIII	CATG	2 cut(s)	226, 428
NlaIV	GGNNCC	8 cut(s)	125, 358, 384, 485, 686, 739, 740, 836
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	399
PciSI	GCTCTTC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	706
PdmI	GAANNNNTTC	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	6 cut(s)	38, 756, 794, 845, 874, 877
PleI	GAGTC	2 cut(s)	220, 542
PpsI	GAGTC	2 cut(s)	220, 542
Psp6I	CCWGG	2 cut(s)	741, 867
PspGI	CCWGG	2 cut(s)	741, 867
PspN4I	GGNNCC	8 cut(s)	125, 358, 384, 485, 686, 739, 740, 836
PspOMI	GGGCCC	1 cut(s)	738
PspPI	GGNCC	5 cut(s)	685, 738, 739, 835, 860
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	3 cut(s)	125, 485, 731
RsaNI	GTAC	3 cut(s)	124, 484, 730
SacII	CCGCGG	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	6 cut(s)	37, 755, 793, 844, 873, 876
Sau3AI	GATC	4 cut(s)	118, 356, 435, 864
Sau96I	GGNCC	5 cut(s)	685, 738, 739, 835, 860
SchI	GAGTC	2 cut(s)	220, 542
ScrFI	CCNGG	2 cut(s)	743, 869
SduI	GDGCHC	3 cut(s)	72, 89, 742
SfaNI	GCATC	2 cut(s)	189, 527
SfcI	CTRYAG	2 cut(s)	522, 847
Sfr303I	CCGCGG	1 cut(s)	37
SgrBI	CCGCGG	1 cut(s)	37
SmlI	CTYRAG	2 cut(s)	389, 786
SmoI	CTYRAG	2 cut(s)	389, 786
Sse9I	AATT	6 cut(s)	20, 159, 255, 312, 324, 351
SseBI	AGGCCT	1 cut(s)	399
SsiI	CCGC	5 cut(s)	34, 36, 658, 792, 843
SspMI	CTAG	1 cut(s)	555
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	741, 867
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	295, 450
TaiI	ACGT	1 cut(s)	703
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	6 cut(s)	20, 159, 255, 312, 324, 351
TauI	GCSGC	3 cut(s)	39, 795, 846
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	3 cut(s)	414, 453, 667
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	3 cut(s)	754, 872, 875
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	267, 552, 789
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	3 cut(s)	414, 453, 667
Van91I	CCANNNNNTGG	1 cut(s)	133
XceI	RCATGY	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.