Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Reverse (-)

62678429 .. 62681984

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG448700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTTTGGTGCTTTTCAATAGTGTGTGTAAATTTCTTCAATGTATCGCAGGACAAGGGTTCGGATGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAATTGGATCCACCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTTCTACCACTGGAAACAACGAGGCATGTGTCAATGATCGTCATAACACTGTCAAAGAAGGAAGTCAACAAATCTACCATTGGGTACCAGCCCCCATTACCTGCTGAACTGGTGAAGGCATCTGCAGAGATTGATTATGAAGGAGAGGACTCACCTAGTGGTCGTGGCCGTGGCAGAGGAAGGGGAAGGGGGAGGGGGAGGGGCAGGTTCAGAGGTAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

145

Amino Acids

16.14

Weight (kDa)

9.26

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	9 - 59	6.6e-15	Alba
Rpp20	PF12328	16 - 86	3.5e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	322, 408
Acc65I	GGTACC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	158
AclWI	GGATC	2 cut(s)	165, 178
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	31
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	18, 40, 79
AluBI	AGCT	2 cut(s)	95, 124
AluI	AGCT	2 cut(s)	95, 124
AlwI	GGATC	2 cut(s)	165, 178
AoxI	GGCC	2 cut(s)	211, 379
ApoI	RAATTY	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	213
Asp718I	GGTACC	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	143, 337, 357
BamHI	GGATCC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	297
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
BbsI	GAAGAC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	336
BfuAI	ACCTGC	2 cut(s)	322, 408
BmiI	GGNNCC	3 cut(s)	172, 198, 299
BmsI	GCATC	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	382
Bse1I	ACTGG	3 cut(s)	154, 228, 327
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	70
BseNI	ACTGG	3 cut(s)	154, 228, 327
BshFI	GGCC	2 cut(s)	213, 381
BshNI	GGYRCC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	213, 381
Bsp143I	GATC	2 cut(s)	170, 249
BspANI	GGCC	2 cut(s)	213, 381
BspLI	GGNNCC	3 cut(s)	172, 198, 299
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	2 cut(s)	322, 408
BspPI	GGATC	2 cut(s)	165, 178
BspQI	GCTCTTC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	297
BsrI	ACTGG	3 cut(s)	154, 228, 327
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	2 cut(s)	170, 249
BssNAI	GTATAC	1 cut(s)	159
Bst1107I	GTATAC	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	109, 264
Bst6I	CTCTTC	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	173, 252
BstMBI	GATC	2 cut(s)	170, 249
BstNSI	RCATGY	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BstZ17I	GTATAC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	213, 381
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	3 cut(s)	221, 260, 433
BveI	ACCTGC	2 cut(s)	322, 408
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	6 cut(s)	83, 95, 124, 213, 304, 381
CviKI_1	RGCY	6 cut(s)	83, 95, 124, 213, 304, 381
CviQI	GTAC	1 cut(s)	298
DpnI	GATC	2 cut(s)	172, 251
DpnII	GATC	2 cut(s)	170, 249
DraIII	CACNNNGTG	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	213
FaeI	CATG	1 cut(s)	242
FaiI	YATR	6 cut(s)	86, 159, 182, 240, 257, 351
FatI	CATG	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	158
FokI	GGATG	1 cut(s)	77
FspBI	CTAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	213, 381
Hin1II	CATG	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	362
HphI	GGTGA	3 cut(s)	143, 337, 357
Hpy166II	GTNNAC	2 cut(s)	159, 280
Hpy188I	TCNGA	2 cut(s)	64, 425
Hpy8I	GTNNAC	2 cut(s)	159, 280
HpyAV	CCTTC	7 cut(s)	203, 224, 265, 322, 347, 387, 393
HpyCH4III	ACNGT	2 cut(s)	109, 264
HpyCH4V	TGCA	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	170, 249
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	7 cut(s)	35, 167, 209, 308, 314, 327, 403
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	109, 431
MalI	GATC	2 cut(s)	172, 251
MboI	GATC	2 cut(s)	170, 249
MboII	GAAGA	4 cut(s)	28, 102, 140, 147
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	170
MluCI	AATT	5 cut(s)	31, 69, 126, 138, 165
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	7 cut(s)	199, 228, 352, 383, 399, 405, 419
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	1 cut(s)	129
MunI	CAATTG	1 cut(s)	165
NdeII	GATC	2 cut(s)	170, 249
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	3 cut(s)	172, 198, 299
NmuCI	GTSAC	2 cut(s)	109, 431
NspI	RCATGY	1 cut(s)	242
PceI	AGGCCT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	172, 198, 299
PstI	CTGCAG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	170, 249
SchI	GAGTC	1 cut(s)	356
SetI	ASST	6 cut(s)	97, 126, 316, 370, 422, 430
SfaNI	GCATC	1 cut(s)	341
SfcI	CTRYAG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	31, 69, 126, 138, 165
SseBI	AGGCCT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	109, 264
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	5 cut(s)	31, 69, 126, 138, 165
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	2 cut(s)	228, 267
TseFI	GTSAC	2 cut(s)	109, 431
Tsp45I	GTSAC	2 cut(s)	109, 431
TspDTI	ATGAA	2 cut(s)	81, 366
TspRI	CASTG	2 cut(s)	228, 267
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.