Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004900

Physical Location & Seq

Genomic Coordinates Reverse (-)

61399722 .. 61402974

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG435500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGCGAAACTACATCACTTACGCCATGACTCTGCTTCAGGACAAGGGTTCGGACGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAATTGGATCCACCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTTCTACCACTGGAGACAACGAGGCATGTGTCAATGATCGTCATAACACTGTCAAAGAAGGAAGTCAACAAATCTACCATTGGGTACCAGCCCCCATTACCTGCTGAACTGGTGAAGGCATCTGCGGAGATTGATTATGAAGGAGAGGACTCACCTAGTGGTCGTGGCCGTGGCAGAGGAAGGGGAAGGGGGAGGGGGAGGGGCAGGTTCAGAGGTAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

Alba

Protein Analysis

169

Amino Acids

19.09

Weight (kDa)

9.55

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	19 - 83	3.5e-22	Alba
Rpp20	PF12328	41 - 110	7.7e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20220
fragaria_vesca	FvH4_2g38031 FvH4_2g38031 FvH4_2g38031 FvH4_2g38031
malus_domestica	MD08G1008800.v1.1 MD15G1007600.v1.1
prunus_persica	Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1 Prupe.1G360500_v2.0.a1
pyrus_communis	pycom08g00700 pycom15g00610
rosa_chinensis	RchiOBHm_Chr6g0279221 RchiOBHm_Chr6g0303561
rosa_laevigata	RLG00000011073
rosa_multiflora	Rmu_sc0000756.1_g000001 Rmu_sc0015313.1_g000013 Rmu_ssc0000114.1_g000027
rosa_roxburghii	Rroxscaffold_2G00124790 Rroxscaffold_7G00164630
rosa_rugosa	Rorug03G0334900 Rorug06G0322300
rosa_samantha	Rh2CG175600 Rh6BG047700 Rh6BG466600 Rh6CG448700 Rh6DG383500 Rh6DG435500 Rh7AG382000
rosa_wichuraiana	Rw6G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	394, 480
Acc65I	GGTACC	2 cut(s)	9, 369
AccB1I	GGYRCC	2 cut(s)	9, 369
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	3 cut(s)	12, 237, 250
AcoI	YGGCCR	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	11, 371
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	2 cut(s)	167, 196
AluI	AGCT	2 cut(s)	167, 196
Alw26I	GTCTC	2 cut(s)	32, 293
AlwI	GGATC	3 cut(s)	12, 237, 250
AoxI	GGCC	2 cut(s)	283, 451
Asp700I	GAANNNNTTC	1 cut(s)	285
Asp718I	GGTACC	2 cut(s)	9, 369
AsuHPI	GGTGA	3 cut(s)	215, 409, 429
BamHI	GGATCC	1 cut(s)	242
BanI	GGYRCC	2 cut(s)	9, 369
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
BbsI	GAAGAC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	32, 293
BfaI	CTAG	1 cut(s)	441
BfuAI	ACCTGC	2 cut(s)	394, 480
BmiI	GGNNCC	4 cut(s)	11, 244, 270, 371
BmsI	GCATC	2 cut(s)	75, 413
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	76, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	3 cut(s)	226, 300, 399
BseDI	CCNNGG	2 cut(s)	76, 454
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseNI	ACTGG	3 cut(s)	226, 300, 399
BshFI	GGCC	2 cut(s)	285, 453
BshNI	GGYRCC	2 cut(s)	9, 369
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	32, 293
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	285, 453
Bsp143I	GATC	3 cut(s)	4, 242, 321
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	2 cut(s)	285, 453
BspLI	GGNNCC	4 cut(s)	11, 244, 270, 371
BspMI	ACCTGC	2 cut(s)	394, 480
BspPI	GGATC	3 cut(s)	12, 237, 250
BspQI	GCTCTTC	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	9, 369
BsrI	ACTGG	3 cut(s)	226, 300, 399
BssECI	CCNNGG	2 cut(s)	76, 454
BssMI	GATC	3 cut(s)	4, 242, 321
BssNAI	GTATAC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	181, 336
Bst6I	CTCTTC	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	454
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	7, 245, 324
BstMAI	GTCTC	2 cut(s)	32, 293
BstMBI	GATC	3 cut(s)	4, 242, 321
BstNSI	RCATGY	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BstZ17I	GTATAC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	285, 453
BtgI	CCRYGG	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	293, 332, 505
BveI	ACCTGC	2 cut(s)	394, 480
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	10, 370
CviAII	CATG	2 cut(s)	109, 311
CviJI	RGCY	8 cut(s)	28, 75, 155, 167, 196, 285, 376, 453
CviKI_1	RGCY	8 cut(s)	28, 75, 155, 167, 196, 285, 376, 453
CviQI	GTAC	2 cut(s)	10, 370
DpnI	GATC	3 cut(s)	6, 244, 323
DpnII	GATC	3 cut(s)	4, 242, 321
DraIII	CACNNNGTG	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	112, 314
FaiI	YATR	7 cut(s)	110, 158, 231, 254, 312, 329, 423
FatI	CATG	2 cut(s)	108, 310
FblI	GTMKAC	1 cut(s)	230
FokI	GGATG	1 cut(s)	97
FspBI	CTAG	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	285, 453
HgaI	GACGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	112, 314
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	2 cut(s)	112, 434
HphI	GGTGA	3 cut(s)	215, 409, 429
Hpy166II	GTNNAC	2 cut(s)	231, 352
Hpy188I	TCNGA	2 cut(s)	136, 497
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	231, 352
HpyAV	CCTTC	7 cut(s)	275, 296, 337, 394, 419, 459, 465
HpyCH4III	ACNGT	2 cut(s)	181, 336
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	112, 314
KpnI	GGTACC	2 cut(s)	13, 373
Kzo9I	GATC	3 cut(s)	4, 242, 321
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	8 cut(s)	26, 107, 239, 281, 380, 386, 399, 475
LweI	GCATC	2 cut(s)	75, 413
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	181, 503
MalI	GATC	3 cut(s)	6, 244, 323
MboI	GATC	3 cut(s)	4, 242, 321
MboII	GAAGA	3 cut(s)	174, 212, 219
MfeI	CAATTG	2 cut(s)	45, 237
MflI	RGATCY	1 cut(s)	242
MluCI	AATT	5 cut(s)	45, 141, 198, 210, 237
MlyI	GAGTC	2 cut(s)	106, 428
MnlI	CCTC	8 cut(s)	75, 271, 300, 424, 455, 471, 477, 491
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	201
MunI	CAATTG	2 cut(s)	45, 237
NdeII	GATC	3 cut(s)	4, 242, 321
NlaIII	CATG	2 cut(s)	112, 314
NlaIV	GGNNCC	4 cut(s)	11, 244, 270, 371
NmuCI	GTSAC	2 cut(s)	181, 503
NspI	RCATGY	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	19
PleI	GAGTC	2 cut(s)	106, 428
PpsI	GAGTC	2 cut(s)	106, 428
PspN4I	GGNNCC	4 cut(s)	11, 244, 270, 371
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	2 cut(s)	11, 371
RsaNI	GTAC	2 cut(s)	10, 370
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	3 cut(s)	4, 242, 321
SchI	GAGTC	2 cut(s)	106, 428
SetI	ASST	6 cut(s)	169, 198, 388, 442, 494, 502
SfaNI	GCATC	2 cut(s)	75, 413
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	5 cut(s)	45, 141, 198, 210, 237
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	181, 336
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	5 cut(s)	45, 141, 198, 210, 237
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	300, 339
TseFI	GTSAC	2 cut(s)	181, 503
Tsp45I	GTSAC	2 cut(s)	181, 503
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	2 cut(s)	300, 339
Van91I	CCANNNNNTGG	1 cut(s)	19
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.