Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Forward (+)

7475916 .. 7477081

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12570.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTACAGAGCAAGCCTCACTCCTTGTTTCTGGAAACGCCTCGTTTTCCCGACGGAGACTCAAAAAGAAAATATGCTCGAGAGTTTGGGATTGAGTGGAGTCGTTTCTGTGTTTCTAAGTTGATCAAGTTTGCTGTTAATCGTAGCCGAGGGGAGACCCAGTTTCTAAAGGTACCCGGAATTTGTAGCCATTATATGAATGTGATGAGAGATGTGCTAGAACACATTGGGAGGAACTGTAGAGGTTTTGAGGGGTTGCATATGTCTCATGCATTGGTTGATGTGGATTTGGCTAACGACATTGTGAAATATGTGCCCAAGATTAAGTACTTGTGCTTGAGGAAGGCCAAGATTGACAAGAGTGAGCTTATTGTGTTGATCAAGGGGTGCAGGGAGCTTGAGGTTTTGGATGTTAGGGGCTGTGTGGGTTTTACTGAGCGTGATAGGGAGTTGGCAAATCTTGGCGCTCACATTGGAGAGTTTATGATGGAGGGTTCGAGCCTGTTCACGCCGCAGGAATGGGAGATTGCTGGGGTTATTCAGGTTGATGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.19

Weight (kDa)

7.0

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	172
AciI	CCGC	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	180
AfaI	GTAC	3 cut(s)	6, 174, 329
AluBI	AGCT	2 cut(s)	367, 397
AluI	AGCT	2 cut(s)	367, 397
Alw26I	GTCTC	3 cut(s)	51, 149, 270
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	1 cut(s)	345
ApoI	RAATTY	1 cut(s)	180
Asp718I	GGTACC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	172
BccI	CCATC	1 cut(s)	481
BclI	TGATCA	2 cut(s)	123, 378
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	3 cut(s)	51, 149, 270
BfaI	CTAG	2 cut(s)	218, 556
BfmI	CTRYAG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	468
BisI	GCNGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	513
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BplI	GAGNNNNNCTC	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	358, 419
BpuMI	CCSGG	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 223, 253
Bse1I	ACTGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	318
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	177
BsmAI	GTCTC	3 cut(s)	51, 149, 270
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	123, 378
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	123, 378
Bst4CI	ACNGT	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	117, 435
BstF5I	GGATG	1 cut(s)	415
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	2 cut(s)	126, 381
BstMAI	GTCTC	3 cut(s)	51, 149, 270
BstMBI	GATC	2 cut(s)	123, 378
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	5, 173, 328
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	9 cut(s)	16, 147, 189, 293, 347, 367, 397, 420, 501
CviKI_1	RGCY	9 cut(s)	16, 147, 189, 293, 347, 367, 397, 420, 501
CviQI	GTAC	3 cut(s)	5, 173, 328
DdeI	CTNAG	2 cut(s)	117, 435
DpnI	GATC	2 cut(s)	125, 380
DpnII	GATC	2 cut(s)	123, 378
Eco31I	GGTCTC	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	274
FaeI	CATG	1 cut(s)	272
FaiI	YATR	8 cut(s)	75, 195, 197, 261, 263, 270, 312, 485
FatI	CATG	1 cut(s)	268
FauNDI	CATATG	1 cut(s)	261
FbaI	TGATCA	2 cut(s)	123, 378
Fnu4HI	GCNGC	1 cut(s)	512
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	512
FspBI	CTAG	2 cut(s)	218, 556
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	1 cut(s)	512
GsaI	CCCAGC	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HinfI	GANTC	2 cut(s)	59, 100
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188III	TCNNGA	3 cut(s)	32, 50, 80
Hpy8I	GTNNAC	1 cut(s)	507
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	3 cut(s)	259, 272, 390
HpyF3I	CTNAG	2 cut(s)	117, 435
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	465
KpnI	GGTACC	1 cut(s)	176
Ksp22I	TGATCA	2 cut(s)	123, 378
Kzo9I	GATC	2 cut(s)	123, 378
LmnI	GCTCC	1 cut(s)	394
LpnPI	CCDG	8 cut(s)	17, 173, 190, 376, 500, 515, 516, 527
MaeI	CTAG	2 cut(s)	218, 556
MalI	GATC	2 cut(s)	125, 380
MboI	GATC	2 cut(s)	123, 378
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	53, 109
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	2 cut(s)	138, 324
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	177
NciI	CCSGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	261
NdeII	GATC	2 cut(s)	123, 378
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	274
PaeR7I	CTCGAG	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	513
PleI	GAGTC	2 cut(s)	53, 108
PpsI	GAGTC	2 cut(s)	53, 108
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	174
RsaI	GTAC	3 cut(s)	6, 174, 329
RsaNI	GTAC	3 cut(s)	5, 173, 328
SaqAI	TTAA	2 cut(s)	138, 324
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	2 cut(s)	123, 378
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	2 cut(s)	53, 109
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	174, 247, 369, 399, 405, 546
SfcI	CTRYAG	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	78
SmlI	CTYRAG	3 cut(s)	78, 337, 398
SmoI	CTYRAG	3 cut(s)	78, 337, 398
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	2 cut(s)	218, 556
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	2 cut(s)	79, 497
TasI	AATT	1 cut(s)	180
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	138, 324
Tru9I	TTAA	2 cut(s)	138, 324
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	69
XapI	RAATTY	1 cut(s)	180
XhoI	CTCGAG	1 cut(s)	78
XspI	CTAG	2 cut(s)	218, 556
ZrmI	AGTACT	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.