pycom07g16790

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0003061
Physical Location & Seq
Reverse (-)
19248336 .. 19249139
804 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16790.1

Sequence Viewer

Length: 804 bp
ATGGACAGACCGAGGAAGCTCAACCACCGGCGGAACCTCAACCGCAGCTGGGAGGACATGGAACAGAACTGTTTGGCTCAAGTGTTCATCCGAGTCGGACTGGAGTCACTCCTCCTTTTCATCCCGTTCGTGTGCAAATCCTGGTACCGCGCCACCAAAAACCCCGCCTGCTGGGAGCGCATCATTTTCCCCGACGCCAATGACGACGTCACCGATCCTTTCAGCCTCAACGACGCCGTTTTGGACCGCCCCTGGACCACGGCGAATCGAACCGAAAATCAGCGTTTCGATGTCTTCATCCGGACATTCGCGCGCGAAAATGACATTCTGTGGCGACACTTCTCGATCACGAATTTCATGAAAATGGTCATCGACCGCAGCAGTGGCAGCCTCCGGTTCCTGAAAATCCCTGGCCTCCTCAGCCACTACATGTTCGCGATCCACAAAACCCTCCAGCACGTCGGCAAGTGCTGCAAGAACTTCGCTGGGATGCAGCTGACAAATGCAGCGATCGGGCCAAGCGTGGTGGAGGCGATCGTGACATTCGTGCCCAACCTGAGCTTTCTGTCTCTGAGAGGGTCGCAGATCCCGAGGGAGTTGATGGTGATGCTGCTCAAGGAGATGAAGAACCTGGTGCTGTTGGACGTGAGGGAGTGTGTCGGGTTCGACCAGCAGGACGAGGAGATTTTGCGGCTGGCTTCGGAGATTCCTACGTTTCTGTGTCGGGGGGCGAGGATTTTTGCCCAGGAGCACCTGTTGCGTATGTCGGATGGGTCATTGGTTCATGTCATTGCCCTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

268

Amino Acids

30.92

Weight (kDa)

8.5

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AccII CGCG 5 cut(s) 150, 311, 313, 315, 437
AccIII TCCGGA 1 cut(s) 300
AciI CCGC 7 cut(s) 31, 43, 148, 165, 247, 376, 691
AclWI GGATC 3 cut(s) 209, 433, 580
AcsI RAATTY 1 cut(s) 352
AcyI GRCGYC 3 cut(s) 195, 207, 234
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 49, 171
AflIII ACRYGT 1 cut(s) 429
AjiI CACGTC 2 cut(s) 460, 646
AjnI CCWGG 6 cut(s) 140, 251, 409, 630, 744, 795
AluBI AGCT 4 cut(s) 19, 48, 496, 561
AluI AGCT 4 cut(s) 19, 48, 496, 561
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 3 cut(s) 209, 433, 580
Ama87I CYCGRG 1 cut(s) 589
Aor13HI TCCGGA 1 cut(s) 300
AoxI GGCC 2 cut(s) 412, 515
ApeKI GCWGC 7 cut(s) 45, 378, 387, 471, 493, 506, 610
ApoI RAATTY 1 cut(s) 352
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 4 cut(s) 152, 180, 313, 315
AspS9I GGNCC 3 cut(s) 244, 255, 515
AsuHPI GGTGA 2 cut(s) 202, 616
AvaI CYCGRG 1 cut(s) 589
AvaII GGWCC 2 cut(s) 244, 255
BaeGI GKGCMC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 753
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 7 cut(s) 57, 390, 399, 458, 505, 518, 597
BccI CCATC 2 cut(s) 595, 764
BceAI ACGGC 2 cut(s) 221, 276
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BciT130I CCWGG 6 cut(s) 142, 253, 411, 632, 746, 797
BcoDI GTCTC 1 cut(s) 573
BisI GCNGC 8 cut(s) 46, 379, 388, 472, 494, 507, 611, 692
BlsI GCNGC 8 cut(s) 47, 380, 389, 473, 495, 508, 612, 693
Bme1390I CCNGG 6 cut(s) 142, 253, 411, 632, 746, 797
Bme18I GGWCC 2 cut(s) 244, 255
BmeT110I CYCGRG 1 cut(s) 589
BmgBI CACGTC 2 cut(s) 460, 646
BmgT120I GGNCC 3 cut(s) 244, 255, 515
BmiI GGNNCC 3 cut(s) 35, 146, 398
BmrFI CCNGG 6 cut(s) 142, 253, 411, 632, 746, 797
BmsI GCATC 3 cut(s) 189, 480, 597
BoxI GACNNNNGTC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 286
BpmI CTGGAG 2 cut(s) 122, 437
Bpu10I CCTNAGC 2 cut(s) 419, 557
BpuEI CTTGAG 2 cut(s) 63, 599
BsaHI GRCGYC 3 cut(s) 195, 207, 234
BsaJI CCNNGG 7 cut(s) 11, 251, 258, 409, 590, 744, 795
BsaWI WCCGGW 2 cut(s) 300, 393
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 171
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 789
BseAI TCCGGA 1 cut(s) 300
BseBI CCWGG 6 cut(s) 142, 253, 411, 632, 746, 797
BseDI CCNNGG 7 cut(s) 11, 251, 258, 409, 590, 744, 795
BseGI GGATG 5 cut(s) 87, 120, 297, 495, 775
BseLI CCNNNNNNNGG 2 cut(s) 49, 171
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 3 cut(s) 433, 548, 563
BseNI ACTGG 1 cut(s) 105
BsePI GCGCGC 1 cut(s) 311
BseRI GAGGAG 3 cut(s) 101, 407, 695
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 7 cut(s) 57, 390, 399, 458, 505, 518, 597
BseYI CCCAGC 3 cut(s) 48, 171, 485
Bsh1236I CGCG 5 cut(s) 150, 311, 313, 315, 437
Bsh1285I CGRYCG 3 cut(s) 376, 513, 537
BshFI GGCC 2 cut(s) 414, 517
BshNI GGYRCC 1 cut(s) 144
BsiEI CGRYCG 3 cut(s) 376, 513, 537
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 1 cut(s) 589
BsiSI CCGG 3 cut(s) 28, 301, 394
BslI CCNNNNNNNGG 2 cut(s) 49, 171
BsmAI GTCTC 1 cut(s) 573
BsnI GGCC 2 cut(s) 414, 517
BsoBI CYCGRG 1 cut(s) 589
Bsp1286I GDGCHC 2 cut(s) 552, 753
Bsp13I TCCGGA 1 cut(s) 300
Bsp143I GATC 6 cut(s) 214, 345, 438, 510, 534, 585
Bsp68I TCGCGA 1 cut(s) 437
BspACI CCGC 7 cut(s) 31, 43, 148, 165, 247, 376, 691
BspANI GGCC 2 cut(s) 414, 517
BspCNI CTCAG 3 cut(s) 432, 549, 564
BspEI TCCGGA 1 cut(s) 300
BspFNI CGCG 5 cut(s) 150, 311, 313, 315, 437
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 3 cut(s) 35, 146, 398
BspPI GGATC 3 cut(s) 209, 433, 580
BspT107I GGYRCC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 789
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 7 cut(s) 11, 251, 258, 409, 590, 744, 795
BssHII GCGCGC 1 cut(s) 311
BssMI GATC 6 cut(s) 214, 345, 438, 510, 534, 585
BssNI GRCGYC 3 cut(s) 195, 207, 234
Bst2UI CCWGG 6 cut(s) 142, 253, 411, 632, 746, 797
Bst4CI ACNGT 1 cut(s) 71
BstACI GRCGYC 3 cut(s) 195, 207, 234
BstAPI GCANNNNNTGC 2 cut(s) 471, 757
BstC8I GCNNGC 3 cut(s) 169, 313, 696
BstDEI CTNAG 3 cut(s) 419, 557, 572
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 5 cut(s) 87, 120, 297, 495, 775
BstFNI CGCG 5 cut(s) 150, 311, 313, 315, 437
BstHHI GCGC 4 cut(s) 152, 180, 313, 315
BstKTI GATC 6 cut(s) 217, 348, 441, 513, 537, 588
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 6 cut(s) 214, 345, 438, 510, 534, 585
BstMCI CGRYCG 3 cut(s) 376, 513, 537
BstMWI GCNNNNNNNGC 6 cut(s) 177, 384, 387, 420, 471, 757
BstNI CCWGG 6 cut(s) 142, 253, 411, 632, 746, 797
BstNSI RCATGY 1 cut(s) 433
BstPAI GACNNNNGTC 1 cut(s) 103
BstSCI CCNGG 6 cut(s) 140, 251, 409, 630, 744, 795
BstSLI GKGCMC 1 cut(s) 552
BstUI CGCG 5 cut(s) 150, 311, 313, 315, 437
BstV1I GCAGC 7 cut(s) 57, 390, 399, 458, 505, 518, 597
BstV2I GAAGAC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 585
BstYI RGATCY 1 cut(s) 585
BsuRI GGCC 2 cut(s) 414, 517
BtgI CCRYGG 1 cut(s) 258
BtrI CACGTC 2 cut(s) 460, 646
BtsCI GGATG 5 cut(s) 87, 120, 297, 495, 775
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 388
BtuMI TCGCGA 1 cut(s) 437
Cac8I GCNNGC 3 cut(s) 169, 313, 696
CciI TCATGA 1 cut(s) 357
CfoI GCGC 4 cut(s) 152, 180, 313, 315
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 3 cut(s) 244, 255, 515
CseI GACGC 2 cut(s) 203, 242
CsiI ACCWGGT 1 cut(s) 630
Csp6I GTAC 1 cut(s) 145
CspCI CAANNNNNGTGG 2 cut(s) 507, 542
CviAII CATG 4 cut(s) 58, 358, 430, 785
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 3 cut(s) 419, 557, 572
DpnI GATC 6 cut(s) 216, 347, 440, 512, 536, 587
DpnII GATC 6 cut(s) 214, 345, 438, 510, 534, 585
EciI GGCGGA 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 244, 255
Eco88I CYCGRG 1 cut(s) 589
EcoRII CCWGG 6 cut(s) 140, 251, 409, 630, 744, 795
FaeI CATG 4 cut(s) 61, 361, 433, 788
FaiI YATR 5 cut(s) 59, 359, 431, 764, 786
FatI CATG 4 cut(s) 57, 357, 429, 784
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 8 cut(s) 46, 379, 388, 472, 494, 507, 611, 692
FokI GGATG 5 cut(s) 74, 107, 284, 502, 782
Fsp4HI GCNGC 8 cut(s) 46, 379, 388, 472, 494, 507, 611, 692
GlaI GCGC 4 cut(s) 151, 179, 312, 314
GluI GCNGC 8 cut(s) 46, 379, 388, 472, 494, 507, 611, 692
GsaI CCCAGC 3 cut(s) 52, 175, 489
GsuI CTGGAG 2 cut(s) 122, 437
HaeIII GGCC 2 cut(s) 414, 517
HapII CCGG 3 cut(s) 28, 301, 394
HgaI GACGC 2 cut(s) 203, 242
HhaI GCGC 4 cut(s) 152, 180, 313, 315
Hin1I GRCGYC 3 cut(s) 195, 207, 234
Hin1II CATG 4 cut(s) 61, 361, 433, 788
Hin6I GCGC 4 cut(s) 150, 178, 311, 313
HinP1I GCGC 4 cut(s) 150, 178, 311, 313
HinfI GANTC 4 cut(s) 93, 104, 265, 706
HpaII CCGG 3 cut(s) 28, 301, 394
HphI GGTGA 2 cut(s) 202, 616
Hpy188I TCNGA 5 cut(s) 92, 98, 573, 703, 769
Hpy188III TCNNGA 8 cut(s) 301, 343, 349, 358, 400, 436, 538, 589
Hpy99I CGWCG 4 cut(s) 197, 209, 236, 464
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 4 cut(s) 207, 459, 645, 713
HpyCH4V TGCA 4 cut(s) 135, 474, 493, 506
HpyF10VI GCNNNNNNNGC 6 cut(s) 177, 384, 387, 420, 471, 757
HpyF3I CTNAG 3 cut(s) 419, 557, 572
HpySE526I ACGT 4 cut(s) 207, 459, 645, 713
Hsp92I GRCGYC 3 cut(s) 195, 207, 234
Hsp92II CATG 4 cut(s) 61, 361, 433, 788
HspAI GCGC 4 cut(s) 150, 178, 311, 313
Kpn2I TCCGGA 1 cut(s) 300
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 6 cut(s) 214, 345, 438, 510, 534, 585
LmnI GCTCC 2 cut(s) 175, 748
Lsp1109I GCAGC 7 cut(s) 57, 390, 399, 458, 505, 518, 597
LweI GCATC 3 cut(s) 189, 480, 597
MabI ACCWGGT 1 cut(s) 630
MaeII ACGT 4 cut(s) 207, 459, 645, 713
MaeIII GTNAC 3 cut(s) 105, 208, 538
MalI GATC 6 cut(s) 216, 347, 440, 512, 536, 587
MauBI CGCGCGCG 1 cut(s) 311
MboI GATC 6 cut(s) 214, 345, 438, 510, 534, 585
MboII GAAGA 2 cut(s) 286, 637
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 2 cut(s) 552, 753
MluCI AATT 1 cut(s) 352
MlyI GAGTC 2 cut(s) 102, 113
MmeI TCCRAC 3 cut(s) 76, 621, 747
MroI TCCGGA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 2 cut(s) 48, 496
MspI CCGG 3 cut(s) 28, 301, 394
MspR9I CCNGG 6 cut(s) 142, 253, 411, 632, 746, 797
MvaI CCWGG 6 cut(s) 142, 253, 411, 632, 746, 797
MvnI CGCG 5 cut(s) 150, 311, 313, 315, 437
MwoI GCNNNNNNNGC 6 cut(s) 177, 384, 387, 420, 471, 757
NdeII GATC 6 cut(s) 214, 345, 438, 510, 534, 585
NlaIII CATG 4 cut(s) 61, 361, 433, 788
NlaIV GGNNCC 3 cut(s) 35, 146, 398
NmuCI GTSAC 3 cut(s) 105, 208, 538
NruI TCGCGA 1 cut(s) 437
NspI RCATGY 1 cut(s) 433
PagI TCATGA 1 cut(s) 357
PauI GCGCGC 1 cut(s) 311
PciI ACATGT 1 cut(s) 429
PcsI WCGNNNNNNNCGW 5 cut(s) 201, 210, 519, 543, 587
PfeI GAWTC 2 cut(s) 265, 706
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 8 cut(s) 47, 380, 389, 473, 495, 508, 612, 693
Ple19I CGATCG 2 cut(s) 513, 537
PleI GAGTC 2 cut(s) 101, 112
PpsI GAGTC 2 cut(s) 101, 112
PscI ACATGT 1 cut(s) 429
PshAI GACNNNNGTC 1 cut(s) 103
Psp6I CCWGG 6 cut(s) 140, 251, 409, 630, 744, 795
PspFI CCCAGC 3 cut(s) 48, 171, 485
PspGI CCWGG 6 cut(s) 140, 251, 409, 630, 744, 795
PspN4I GGNNCC 3 cut(s) 35, 146, 398
PspPI GGNCC 3 cut(s) 244, 255, 515
PsuI RGATCY 1 cut(s) 585
PsyI GACNNNGTC 1 cut(s) 206
PteI GCGCGC 1 cut(s) 311
PvuI CGATCG 2 cut(s) 513, 537
PvuII CAGCTG 2 cut(s) 48, 496
RruI TCGCGA 1 cut(s) 437
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 362
SatI GCNGC 8 cut(s) 46, 379, 388, 472, 494, 507, 611, 692
Sau3AI GATC 6 cut(s) 214, 345, 438, 510, 534, 585
Sau96I GGNCC 3 cut(s) 244, 255, 515
SchI GAGTC 2 cut(s) 102, 113
ScrFI CCNGG 6 cut(s) 142, 253, 411, 632, 746, 797
SduI GDGCHC 2 cut(s) 552, 753
SexAI ACCWGGT 1 cut(s) 630
SfaNI GCATC 3 cut(s) 189, 480, 597
SgrAI CRCCGGYG 1 cut(s) 27
SinI GGWCC 2 cut(s) 244, 255
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 78, 614
SmoI CTYRAG 2 cut(s) 78, 614
Sse9I AATT 1 cut(s) 352
SsiI CCGC 7 cut(s) 31, 43, 148, 165, 247, 376, 691
StyD4I CCNGG 6 cut(s) 140, 251, 409, 630, 744, 795
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 4 cut(s) 210, 462, 648, 716
TaqI TCGA 5 cut(s) 268, 288, 344, 372, 666
TaqII GACCGA 1 cut(s) 25
TasI AATT 1 cut(s) 352
TauI GCSGC 1 cut(s) 694
TfiI GAWTC 2 cut(s) 265, 706
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 3 cut(s) 105, 208, 538
TseI GCWGC 7 cut(s) 45, 378, 387, 471, 493, 506, 610
Tsp45I GTSAC 3 cut(s) 105, 208, 538
TspDTI ATGAA 7 cut(s) 76, 109, 286, 346, 374, 638, 773
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 244, 255
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 433
ZraI GACGTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.