Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

54620258 .. 54628801

Gene Structure 8544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG313600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGACCACCACCTTGTCAACCTCTCCGGCGCGGACCGCCGGACCTCTGATCGGACATGGGAAGATTTACCCAAAGACTGTTTGCTCAATATCTTGGAGAGAGTCGGAACAGAGTCTTTACTAATGTTCATCCCTTTGGTCTGCAAATCTTGGTACAGAGCAAGCCTCAGTTCTTCTTGCTGGAAACGCCTCTTTTTCCCGGCGGAGATTGAAAAAGGTACTGTCATTTATCCTTGGAGCTTTCCCGTTTCTACTTCCGACGACGATGATCAGAGCATTAGTTTCGATTACGTTATCAGAAGATATGCAAAGGAGTTTGGGATTGAATGGAGTCGTTTCTATGTTTCTAAGTTCATTAAGTTTGCGGTTAATCGTAGCCAAGGGGAGACCCAGTTTCTCAAGGTACCCGGAATTTGCAGCCACTATATGAATGCAATGAGAGAGATACTAGAACACATTGGGAGGAATTGTAGAGGTTTTGAGGGTTTGCATATGTCTCATGCATTGGTTGATGTGGATTTGGCTAAGGACATTGTGAAATATGTGCCGCAGATTAAGTACTTGTGCTTGAAGAAGGCCAAGATTGGCCGGATTGAGCTTATTGTGTTGATCAAGGGGTGCAGGGAGCTTAAGGTTTTGGATGTTCGGGACTGTCTGGGTTTTGCTGAGGGTGATGGGGAAATAGCAGAGCTTGGTTCTCACATTGGAGAGTTTATGATGGAGGGTTCGAGACAATTCAGGAGACGAGATTGGGTTGAGGTTGCTGGGGTTGTTCAGTTTGATGGAGGAGGTGAGAGAAAAGGAATTGATGGAATTGTGGTCGGAATGTTGGGAAGTGAAGGGATTGTAGTGGGGAAGTTGGGGAATGTAGTGGCCGGAAGTGGAGGTAGAGTGAACTTAGGAGCTGTGGGAAGGTTTGGCATTGTTGGATTTGGTAGAGATGGGATTTGGGTGCTTGGCAGAGACGGGATTTGTGTTGTGGGTTTTGGCAATGTTGGCAATCGTGGCAGTGAAGTTGGCATAGGCAGTGTGGAAGGCAGTGGAGGCAATGCACCCTTGGGAATCGGAATCGATGGAATTGATGTCTGCAACAGGTGCCTGGCGCCAAAGCTCATGTCAATGCTTGACAAACACAATGCTGCTACCATGATAGATAATAGGGAACAATGCATGAGGCCTGCCATTTTAGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

43.88

Weight (kDa)

6.72

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	20 - 66	3.1e-07	F-box-like
F-box	PF00646	20 - 62	1.9e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	403
AccB1I	GGYRCC	3 cut(s)	403, 1095, 1102
AccII	CGCG	1 cut(s)	32
AciI	CCGC	5 cut(s)	32, 37, 203, 365, 548
AcoI	YGGCCR	2 cut(s)	586, 873
AcsI	RAATTY	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	1103
AfaI	GTAC	4 cut(s)	155, 220, 405, 560
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	629
AgsI	TTSAA	4 cut(s)	212, 326, 571, 1193
AjnI	CCWGG	1 cut(s)	1098
AluBI	AGCT	6 cut(s)	240, 598, 628, 691, 905, 1111
AluI	AGCT	6 cut(s)	240, 598, 628, 691, 905, 1111
Alw26I	GTCTC	5 cut(s)	380, 501, 724, 736, 957
AoxI	GGCC	4 cut(s)	576, 586, 873, 1175
ApeKI	GCWGC	2 cut(s)	417, 1139
ApoI	RAATTY	1 cut(s)	411
ArsI	GACNNNNNNTTYG	2 cut(s)	1100, 1132
Asp718I	GGTACC	1 cut(s)	403
AspLEI	GCGC	2 cut(s)	32, 1105
AspS9I	GGNCC	3 cut(s)	4, 34, 42
AsuC2I	CCSGG	2 cut(s)	200, 408
AsuHPI	GGTGA	2 cut(s)	683, 803
AvaII	GGWCC	3 cut(s)	4, 34, 42
BanI	GGYRCC	3 cut(s)	403, 1095, 1102
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	2 cut(s)	429, 1126
BccI	CCATC	6 cut(s)	668, 712, 776, 803, 935, 1067
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	1100
BclI	TGATCA	2 cut(s)	268, 609
BcnI	CCSGG	2 cut(s)	200, 408
BcoDI	GTCTC	5 cut(s)	380, 501, 724, 736, 957
BfaI	CTAG	1 cut(s)	449
BfoI	RGCGCY	1 cut(s)	1106
BfrI	CTTAAG	1 cut(s)	629
BisI	GCNGC	3 cut(s)	418, 548, 1140
BlsI	GCNGC	3 cut(s)	419, 549, 1141
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	3 cut(s)	200, 408, 1100
Bme18I	GGWCC	3 cut(s)	4, 34, 42
BmgT120I	GGNCC	3 cut(s)	4, 34, 42
BmiI	GGNNCC	3 cut(s)	405, 1097, 1104
BmrFI	CCNGG	3 cut(s)	200, 408, 1100
BmrI	ACTGGG	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	385
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	2 cut(s)	525, 666
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	2 cut(s)	200, 408
Bsa29I	ATCGAT	1 cut(s)	1071
BsaHI	GRCGYC	1 cut(s)	1103
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	233, 379, 1056
BsaXI	ACNNNNNCTCC	6 cut(s)	377, 407, 454, 484, 876, 906
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	391
Bse3DI	GCAATG	3 cut(s)	441, 997, 1054
BseBI	CCWGG	1 cut(s)	1100
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	3 cut(s)	233, 379, 1056
BseGI	GGATG	2 cut(s)	129, 646
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMI	GCAATG	3 cut(s)	441, 997, 1054
BseMII	CTCAG	2 cut(s)	181, 657
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	1 cut(s)	801
BseXI	GCAGC	2 cut(s)	429, 1126
BseYI	CCCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	4 cut(s)	578, 588, 875, 1177
BshNI	GGYRCC	3 cut(s)	403, 1095, 1102
BshVI	ATCGAT	1 cut(s)	1071
BsiSI	CCGG	6 cut(s)	27, 40, 200, 408, 589, 876
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	5 cut(s)	380, 501, 724, 736, 957
BsmBI	CGTCTC	2 cut(s)	736, 957
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	4 cut(s)	578, 588, 875, 1177
Bso31I	GGTCTC	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	49, 268, 609
BspACI	CCGC	5 cut(s)	32, 37, 203, 365, 548
BspANI	GGCC	4 cut(s)	578, 588, 875, 1177
BspCNI	CTCAG	2 cut(s)	180, 658
BspDI	ATCGAT	1 cut(s)	1071
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	3 cut(s)	405, 1097, 1104
BspT107I	GGYRCC	3 cut(s)	403, 1095, 1102
BspTI	CTTAAG	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	380
BsrDI	GCAATG	3 cut(s)	441, 997, 1054
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	3 cut(s)	233, 379, 1056
BssMI	GATC	3 cut(s)	49, 268, 609
BssNI	GRCGYC	1 cut(s)	1103
BssT1I	CCWWGG	3 cut(s)	233, 379, 1056
Bst2UI	CCWGG	1 cut(s)	1100
Bst4CI	ACNGT	3 cut(s)	80, 223, 653
BstACI	GRCGYC	1 cut(s)	1103
BstAFI	CTTAAG	1 cut(s)	629
BstAPI	GCANNNNNTGC	1 cut(s)	1095
BstC8I	GCNNGC	2 cut(s)	163, 1179
BstDEI	CTNAG	5 cut(s)	167, 348, 525, 666, 898
BstF5I	GGATG	2 cut(s)	129, 646
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	1106
BstHHI	GCGC	2 cut(s)	32, 1105
BstKTI	GATC	3 cut(s)	52, 271, 612
BstMAI	GTCTC	5 cut(s)	380, 501, 724, 736, 957
BstMBI	GATC	3 cut(s)	49, 268, 609
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 186, 996, 1005, 1044, 1095
BstNI	CCWGG	1 cut(s)	1100
BstSCI	CCNGG	3 cut(s)	198, 406, 1098
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	429, 1126
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	4 cut(s)	578, 588, 875, 1177
BsuTUI	ATCGAT	1 cut(s)	1071
BtsCI	GGATG	2 cut(s)	129, 646
BtsI	GCAGTG	3 cut(s)	1015, 1033, 1045
BtsIMutI	CAGTG	3 cut(s)	1015, 1033, 1045
Cac8I	GCNNGC	2 cut(s)	163, 1179
CfoI	GCGC	2 cut(s)	32, 1105
Cfr13I	GGNCC	3 cut(s)	4, 34, 42
ClaI	ATCGAT	1 cut(s)	1071
CpoI	CGGWCCG	1 cut(s)	34
Csp6I	GTAC	4 cut(s)	154, 219, 404, 559
CspI	CGGWCCG	1 cut(s)	34
CviAII	CATG	5 cut(s)	57, 500, 1114, 1147, 1171
CviQI	GTAC	4 cut(s)	154, 219, 404, 559
DdeI	CTNAG	5 cut(s)	167, 348, 525, 666, 898
DinI	GGCGCC	1 cut(s)	1104
DpnI	GATC	3 cut(s)	51, 270, 611
DpnII	GATC	3 cut(s)	49, 268, 609
EaeI	YGGCCR	2 cut(s)	586, 873
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	3 cut(s)	233, 379, 1056
Eco147I	AGGCCT	1 cut(s)	1177
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	3 cut(s)	4, 34, 42
EcoRII	CCWGG	1 cut(s)	1098
EcoT14I	CCWWGG	3 cut(s)	233, 379, 1056
EcoT22I	ATGCAT	2 cut(s)	505, 1172
EgeI	GGCGCC	1 cut(s)	1104
EheI	GGCGCC	1 cut(s)	1104
ErhI	CCWWGG	3 cut(s)	233, 379, 1056
Esp3I	CGTCTC	2 cut(s)	736, 957
FaeI	CATG	5 cut(s)	60, 503, 1117, 1150, 1174
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	5 cut(s)	56, 499, 1113, 1146, 1170
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	2 cut(s)	268, 609
Fnu4HI	GCNGC	3 cut(s)	418, 548, 1140
FokI	GGATG	2 cut(s)	116, 653
Fsp4HI	GCNGC	3 cut(s)	418, 548, 1140
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	2 cut(s)	31, 1104
GluI	GCNGC	3 cut(s)	418, 548, 1140
GsaI	CCCAGC	1 cut(s)	768
HaeII	RGCGCY	1 cut(s)	1106
HaeIII	GGCC	4 cut(s)	578, 588, 875, 1177
HapII	CCGG	6 cut(s)	27, 40, 200, 408, 589, 876
HhaI	GCGC	2 cut(s)	32, 1105
Hin1I	GRCGYC	1 cut(s)	1103
Hin1II	CATG	5 cut(s)	60, 503, 1117, 1150, 1174
Hin6I	GCGC	2 cut(s)	30, 1103
HinP1I	GCGC	2 cut(s)	30, 1103
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	5 cut(s)	102, 113, 331, 1062, 1068
HpaII	CCGG	6 cut(s)	27, 40, 200, 408, 589, 876
HphI	GGTGA	2 cut(s)	683, 803
Hpy166II	GTNNAC	2 cut(s)	19, 895
Hpy188I	TCNGA	8 cut(s)	49, 54, 107, 259, 273, 299, 824, 1067
Hpy188III	TCNNGA	3 cut(s)	647, 729, 739
Hpy8I	GTNNAC	2 cut(s)	19, 895
Hpy99I	CGWCG	2 cut(s)	263, 266
HpyAV	CCTTC	4 cut(s)	568, 833, 906, 1028
HpyCH4III	ACNGT	3 cut(s)	80, 223, 653
HpyCH4IV	ACGT	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 186, 996, 1005, 1044, 1095
HpyF3I	CTNAG	5 cut(s)	167, 348, 525, 666, 898
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	1103
Hsp92II	CATG	5 cut(s)	60, 503, 1117, 1150, 1174
HspAI	GCGC	2 cut(s)	30, 1103
KasI	GGCGCC	1 cut(s)	1102
KpnI	GGTACC	1 cut(s)	407
Ksp22I	TGATCA	2 cut(s)	268, 609
Kzo9I	GATC	3 cut(s)	49, 268, 609
LmnI	GCTCC	3 cut(s)	237, 625, 902
Lsp1109I	GCAGC	2 cut(s)	429, 1126
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	291
MalI	GATC	3 cut(s)	51, 270, 611
MboI	GATC	3 cut(s)	49, 268, 609
MboII	GAAGA	4 cut(s)	74, 165, 312, 583
MluCI	AATT	6 cut(s)	411, 466, 734, 804, 813, 1077
Mly113I	GGCGCC	1 cut(s)	1103
MlyI	GAGTC	3 cut(s)	111, 122, 340
MmeI	TCCRAC	4 cut(s)	85, 282, 802, 907
Mph1103I	ATGCAT	2 cut(s)	505, 1172
MseI	TTAA	4 cut(s)	357, 369, 555, 630
MslI	CAYNNNNRTG	1 cut(s)	1118
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	6 cut(s)	27, 40, 200, 408, 589, 876
MspR9I	CCNGG	3 cut(s)	200, 408, 1100
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	1100
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	6 cut(s)	36, 186, 996, 1005, 1044, 1095
NarI	GGCGCC	1 cut(s)	1103
NciI	CCSGG	2 cut(s)	200, 408
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	3 cut(s)	49, 268, 609
NlaIII	CATG	5 cut(s)	60, 503, 1117, 1150, 1174
NlaIV	GGNNCC	3 cut(s)	405, 1097, 1104
NsiI	ATGCAT	2 cut(s)	505, 1172
PceI	AGGCCT	1 cut(s)	1177
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	1062, 1068
PkrI	GCNGC	3 cut(s)	419, 549, 1141
PleI	GAGTC	3 cut(s)	110, 121, 339
PluTI	GGCGCC	1 cut(s)	1106
PpsI	GAGTC	3 cut(s)	110, 121, 339
Psp6I	CCWGG	1 cut(s)	1098
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	1098
PspN4I	GGNNCC	3 cut(s)	405, 1097, 1104
PspPI	GGNCC	3 cut(s)	4, 34, 42
RsaI	GTAC	4 cut(s)	155, 220, 405, 560
RsaNI	GTAC	4 cut(s)	154, 219, 404, 559
RseI	CAYNNNNRTG	1 cut(s)	1118
Rsr2I	CGGWCCG	1 cut(s)	34
RsrII	CGGWCCG	1 cut(s)	34
SaqAI	TTAA	4 cut(s)	357, 369, 555, 630
SatI	GCNGC	3 cut(s)	418, 548, 1140
Sau3AI	GATC	3 cut(s)	49, 268, 609
Sau96I	GGNCC	3 cut(s)	4, 34, 42
ScaI	AGTACT	1 cut(s)	560
SchI	GAGTC	3 cut(s)	111, 122, 340
ScrFI	CCNGG	3 cut(s)	200, 408, 1100
SfoI	GGCGCC	1 cut(s)	1104
SinI	GGWCC	3 cut(s)	4, 34, 42
SmiMI	CAYNNNNRTG	1 cut(s)	1118
SmlI	CTYRAG	2 cut(s)	398, 629
SmoI	CTYRAG	2 cut(s)	398, 629
Sse9I	AATT	6 cut(s)	411, 466, 734, 804, 813, 1077
SseBI	AGGCCT	1 cut(s)	1177
SsiI	CCGC	5 cut(s)	32, 37, 203, 365, 548
SspDI	GGCGCC	1 cut(s)	1102
SspMI	CTAG	1 cut(s)	449
StuI	AGGCCT	1 cut(s)	1177
StyD4I	CCNGG	3 cut(s)	198, 406, 1098
StyI	CCWWGG	3 cut(s)	233, 379, 1056
TaaI	ACNGT	3 cut(s)	80, 223, 653
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	285, 728, 1071
TasI	AATT	6 cut(s)	411, 466, 734, 804, 813, 1077
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	2 cut(s)	1062, 1068
Tru1I	TTAA	4 cut(s)	357, 369, 555, 630
Tru9I	TTAA	4 cut(s)	357, 369, 555, 630
TscAI	CASTG	3 cut(s)	1015, 1033, 1045
TseI	GCWGC	2 cut(s)	417, 1139
TspDTI	ATGAA	3 cut(s)	118, 343, 443
TspRI	CASTG	3 cut(s)	1015, 1033, 1045
Vha464I	CTTAAG	1 cut(s)	629
VpaK11BI	GGWCC	3 cut(s)	4, 34, 42
XapI	RAATTY	1 cut(s)	411
XspI	CTAG	1 cut(s)	449
ZrmI	AGTACT	1 cut(s)	560
Zsp2I	ATGCAT	2 cut(s)	505, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.