Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

15925405 .. 15926264

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19272.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGATTGGCTTCTGAGTCCCAAACGCAAGTGCCGGACTAAAGATCGAAGAAGATGGGAGGATCTGAACAGAGACTGTTTGGTTAATGTGTTTGAGAAAGTGGGAATTGAGTCTATGCTCTTGGCCATCCCTTTCGTCTGCAAAACGTGGTACAAAACAAGCCTCGATCCTGCATGCTGGAAACGCCTCATCTTTCCGAACACCATTGATCCTTGGAGCTCTGAAGTTGCTTCCAATGATCGTTGGGATTATCATGACGAAACCGAGAGTTCTCGTTTTGAGTACTTCACAAGAAGATTTGCACGCGAATTTGGACTTGAATGGAGACTTTTCAGTGTCCCCAAATTCATCAACAATGTCATTAATCGTAGCAAGGGAGAAGCGCAATATCTCAAGCTACCTGGAATTTGCAGTGGCTATACCTTTGCTATAAGGAAAATCCTGACACACATCAACAAGAATTGCAGCAAGTTTTGCGGGTTGCATCTGTCCGATACGTCCATCGATGAAGATGATACTATTACATCTGCAATAATTGAATTTGTTCCTATTGTTAAGTTCTTGTGCTTGAGCAAGTCACGCATCTGTAGGAATGATCTGGTGAAAATACTGAAAGGCTGCAAAGAACTTGAGGTTTTGGATGTGAGGGAGTGTATTGGTTTCGATGAGGGTGATGAGAAAATATTGGAGCTTGCATGTCACATTCCTAAATTCATGTGTGCTGGTTCAAAATGTATCTGCAACTTTGTGAGTGCTCCTCTGATTGAGATTCATGACGAGGAAGATGAAGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

266

Amino Acids

30.89

Weight (kDa)

6.03

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	306
AciI	CCGC	1 cut(s)	477
AclWI	GGATC	3 cut(s)	69, 161, 203
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	5 cut(s)	308, 344, 405, 539, 710
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	152, 284
AgsI	TTSAA	3 cut(s)	320, 539, 729
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	3 cut(s)	219, 397, 691
AluI	AGCT	3 cut(s)	219, 397, 691
Alw21I	GWGCWC	2 cut(s)	221, 757
Alw26I	GTCTC	2 cut(s)	66, 319
AlwI	GGATC	3 cut(s)	69, 161, 203
AlwNI	CAGNNNCTG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	465, 618
ApoI	RAATTY	5 cut(s)	308, 344, 405, 539, 710
AseI	ATTAAT	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	613, 683
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	221, 757
BbvI	GCAGC	2 cut(s)	477, 605
BccI	CCATC	3 cut(s)	48, 134, 509
BciT130I	CCWGG	1 cut(s)	402
BcoDI	GTCTC	2 cut(s)	66, 319
BfmI	CTRYAG	1 cut(s)	586
BisI	GCNGC	2 cut(s)	466, 619
BlsI	GCNGC	2 cut(s)	467, 620
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	493, 591
BplI	GAGNNNNNCTC	2 cut(s)	742, 774
BpuEI	CTTGAG	3 cut(s)	377, 589, 650
Bsa29I	ATCGAT	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	126, 646
BseMII	CTCAG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	747
BseXI	GCAGC	2 cut(s)	477, 605
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	2 cut(s)	221, 757
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	3, 323
BsmAI	GTCTC	2 cut(s)	66, 319
BsmFI	GGGAC	2 cut(s)	3, 323
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	221, 757
Bsp143I	GATC	6 cut(s)	43, 61, 166, 208, 238, 595
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	6
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	306
BspHI	TCATGA	2 cut(s)	253, 772
BspPI	GGATC	3 cut(s)	69, 161, 203
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	6 cut(s)	43, 61, 166, 208, 238, 595
BssT1I	CCWWGG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	175, 304, 693
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	126, 646
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	6 cut(s)	46, 64, 169, 211, 241, 598
BstMAI	GTCTC	2 cut(s)	66, 319
BstMBI	GATC	6 cut(s)	43, 61, 166, 208, 238, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 474, 579
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	2 cut(s)	177, 699
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	586
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	477, 605
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	126, 646
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	340, 418
Cac8I	GCNNGC	3 cut(s)	175, 304, 693
CaiI	CAGNNNCTG	1 cut(s)	75
CciI	TCATGA	2 cut(s)	253, 772
CfoI	GCGC	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	151, 283
CviAII	CATG	5 cut(s)	174, 254, 696, 715, 773
CviJI	RGCY	8 cut(s)	10, 125, 162, 219, 397, 417, 618, 691
CviKI_1	RGCY	8 cut(s)	10, 125, 162, 219, 397, 417, 618, 691
CviQI	GTAC	2 cut(s)	151, 283
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	6 cut(s)	45, 63, 168, 210, 240, 597
DpnII	GATC	6 cut(s)	43, 61, 166, 208, 238, 595
EaeI	YGGCCR	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	5 cut(s)	177, 257, 699, 718, 776
FaiI	YATR	8 cut(s)	116, 175, 255, 420, 431, 697, 716, 774
FaqI	GGGAC	2 cut(s)	3, 323
FatI	CATG	5 cut(s)	173, 253, 695, 714, 772
FauI	CCCGC	1 cut(s)	470
Fnu4HI	GCNGC	2 cut(s)	466, 619
FokI	GGATG	2 cut(s)	113, 653
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	466, 619
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	2 cut(s)	466, 619
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	34
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	5 cut(s)	177, 257, 699, 718, 776
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	3 cut(s)	16, 110, 769
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	613, 683
Hpy188I	TCNGA	6 cut(s)	15, 66, 198, 223, 493, 762
Hpy188III	TCNNGA	3 cut(s)	254, 442, 773
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	2 cut(s)	146, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 474, 579
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	2 cut(s)	146, 497
Hsp92II	CATG	5 cut(s)	177, 257, 699, 718, 776
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	6 cut(s)	43, 61, 166, 208, 238, 595
LmnI	GCTCC	3 cut(s)	216, 688, 760
LpnPI	CCDG	8 cut(s)	47, 163, 183, 387, 414, 455, 584, 708
Lsp1109I	GCAGC	2 cut(s)	477, 605
LweI	GCATC	2 cut(s)	493, 591
MaeII	ACGT	2 cut(s)	146, 497
MaeIII	GTNAC	2 cut(s)	576, 698
MalI	GATC	6 cut(s)	45, 63, 168, 210, 240, 597
MboI	GATC	6 cut(s)	43, 61, 166, 208, 238, 595
MboII	GAAGA	5 cut(s)	60, 63, 306, 521, 794
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	221, 757
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	8 cut(s)	105, 308, 344, 405, 460, 534, 539, 710
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	25, 119
MnlI	CCTC	8 cut(s)	52, 173, 197, 625, 639, 661, 768, 772
Mox20I	TGGCCA	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	3 cut(s)	84, 363, 555
Msp20I	TGGCCA	1 cut(s)	125
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	183, 474, 579
NdeII	GATC	6 cut(s)	43, 61, 166, 208, 238, 595
NlaIII	CATG	5 cut(s)	177, 257, 699, 718, 776
NmuCI	GTSAC	2 cut(s)	576, 698
NspI	RCATGY	2 cut(s)	177, 699
PaeI	GCATGC	1 cut(s)	177
PagI	TCATGA	2 cut(s)	253, 772
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	769
PkrI	GCNGC	2 cut(s)	467, 620
PleI	GAGTC	2 cut(s)	24, 118
PpsI	GAGTC	2 cut(s)	24, 118
PshBI	ATTAAT	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	152, 284
RsaNI	GTAC	2 cut(s)	151, 283
SacI	GAGCTC	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	84, 363, 555
SatI	GCNGC	2 cut(s)	466, 619
Sau3AI	GATC	6 cut(s)	43, 61, 166, 208, 238, 595
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	2 cut(s)	25, 119
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	2 cut(s)	221, 757
SetI	ASST	8 cut(s)	149, 221, 399, 403, 425, 500, 636, 693
SfaNI	GCATC	2 cut(s)	493, 591
SfcI	CTRYAG	1 cut(s)	586
SmlI	CTYRAG	3 cut(s)	392, 568, 629
SmoI	CTYRAG	3 cut(s)	392, 568, 629
SphI	GCATGC	1 cut(s)	177
Sse9I	AATT	8 cut(s)	105, 308, 344, 405, 460, 534, 539, 710
SsiI	CCGC	1 cut(s)	477
SspI	AATATT	1 cut(s)	684
SstI	GAGCTC	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	2 cut(s)	149, 500
TaqI	TCGA	4 cut(s)	46, 165, 504, 663
TasI	AATT	8 cut(s)	105, 308, 344, 405, 460, 534, 539, 710
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	769
Tru1I	TTAA	3 cut(s)	84, 363, 555
Tru9I	TTAA	3 cut(s)	84, 363, 555
TscAI	CASTG	2 cut(s)	340, 418
TseFI	GTSAC	2 cut(s)	576, 698
TseI	GCWGC	2 cut(s)	465, 618
Tsp45I	GTSAC	2 cut(s)	576, 698
TspDTI	ATGAA	4 cut(s)	337, 522, 703, 761
TspRI	CASTG	2 cut(s)	340, 418
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	5 cut(s)	308, 344, 405, 539, 710
XceI	RCATGY	2 cut(s)	177, 699
XmnI	GAANNNNTTC	1 cut(s)	543
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.