Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

41344785 .. 41345729

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG277100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTCTTCCTCTGGAAACCCTCCGCAGCAGCTCTCTAGGTCTAGAATCATGTTCATCGACCACTTCGCCCCACGGCCAAATCCAACCTTGGAGTACTGGCATCTGAATCCCACCCCCAGAAGTCGTCATGATCGGAAGTGGGAGGATCTCGAATCCGACTGCCTTGTCAATATCTTTCAAAGAGTTGGTATGGAGTCAATGCTGATGTTCATCCCCTTTGTGTGCAAATCGTGGTACAAAGCTAGCCGCACTCCACATGTCTGGAAGAGCCTCATCTTTCCTGAAGGTATTTTTGATCCGATGAATTTTGATACTGATACTGGTGAAAATGAAGGTTATTGGTTTGATTTGTTTCTGAGGAAATTTGCTCGGGAATTTGACATTCCATGGAGTAACTTCACTGTTCCCAAATTTGTCAACTTGGTGATCAACCGCAGCGAAGGAGGTGCTGAATTTCTTAAGCTACCTGGACTTATTTGCAGCGTATACATGTATGCCATGAAACAAATTCTGAACCACATCAAAGACAACAACTGCAGCAACTTCAAAGGGTTGCATATGGCTGATGCCTATATTACTTGCAAGGATGCGTCGGCGATGGTGAGATGTGTGCCTGAACTCAAGTACTTGTGCTTCAGGAGGGCAACACTGAGTAAGAAGAGTCTTCTCAAAATACTGCGAGGCTGCAGAGATCTTGAGGTTTTGGATGTGAGGGGTTGTGCTGGTTTCAACGAGGATGACAAAGAAATATTGGAGCTTGCTTCTCATATTCCCAAGTTTATGTGTGCTGGTTCTCATCTCCAGCCTGATTTTGTTTCTGGTCGAATTATTCTGCCTTATGATGACGAAGATGATGAAGAAGAGCACAAAGAAGAGGGTCAACAAGAGAACCGAGGACAGGGCCAACAAGAGAACCGAGGACAGGGTCATGAAGAGGGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

314

Amino Acids

36.39

Weight (kDa)

5.73

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	3 cut(s)	23, 247, 433
AclWI	GGATC	2 cut(s)	153, 290
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	6 cut(s)	304, 362, 374, 410, 452, 507
AcuI	CTGAAG	2 cut(s)	303, 619
AfaI	GTAC	3 cut(s)	95, 236, 626
AfiI	CCNNNNNNNGG	2 cut(s)	898, 922
AflII	CTTAAG	1 cut(s)	458
AflIII	ACRYGT	2 cut(s)	256, 489
AgsI	TTSAA	3 cut(s)	179, 547, 730
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	4 cut(s)	31, 242, 463, 757
AluI	AGCT	4 cut(s)	31, 242, 463, 757
Alw21I	GWGCWC	1 cut(s)	867
AlwI	GGATC	2 cut(s)	153, 290
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	3 cut(s)	74, 901, 937
ApeKI	GCWGC	6 cut(s)	25, 28, 435, 480, 537, 684
ApoI	RAATTY	6 cut(s)	304, 362, 374, 410, 452, 507
AspS9I	GGNCC	2 cut(s)	901, 937
AsuHPI	GGTGA	3 cut(s)	335, 436, 613
AsuNHI	GCTAGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BbsI	GAAGAC	1 cut(s)	656
Bbv12I	GWGCWC	1 cut(s)	867
BbvI	GCAGC	6 cut(s)	37, 40, 447, 492, 549, 671
BccI	CCATC	1 cut(s)	592
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	1 cut(s)	468
BclI	TGATCA	1 cut(s)	426
BfaI	CTAG	3 cut(s)	36, 42, 243
BfmI	CTRYAG	2 cut(s)	535, 685
BfrI	CTTAAG	1 cut(s)	458
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	7 cut(s)	26, 29, 247, 436, 481, 538, 685
BlsI	GCNGC	7 cut(s)	27, 30, 248, 437, 482, 539, 686
BmcAI	AGTACT	2 cut(s)	95, 626
Bme1390I	CCNGG	1 cut(s)	468
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	2 cut(s)	901, 937
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	3 cut(s)	109, 556, 577
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	656
BpmI	CTGGAG	1 cut(s)	785
BpuEI	CTTGAG	2 cut(s)	605, 716
BsaBI	GATNNNNATC	1 cut(s)	209
BsaJI	CCNNGG	5 cut(s)	71, 87, 386, 892, 916
Bsc4I	CCNNNNNNNGG	2 cut(s)	898, 922
Bse1I	ACTGG	3 cut(s)	101, 325, 940
Bse8I	GATNNNNATC	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	5 cut(s)	71, 87, 386, 892, 916
BseGI	GGATG	4 cut(s)	210, 592, 712, 742
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	2 cut(s)	898, 922
BseMII	CTCAG	2 cut(s)	347, 641
BseNI	ACTGG	3 cut(s)	101, 325, 940
BseXI	GCAGC	6 cut(s)	37, 40, 447, 492, 549, 671
BshFI	GGCC	3 cut(s)	76, 903, 939
BsiHKAI	GWGCWC	1 cut(s)	867
BsiHKCI	CYCGRG	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	898, 922
BsnI	GGCC	3 cut(s)	76, 903, 939
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp143I	GATC	5 cut(s)	130, 145, 295, 426, 691
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	3 cut(s)	23, 247, 433
BspANI	GGCC	3 cut(s)	76, 903, 939
BspCNI	CTCAG	2 cut(s)	348, 642
BspHI	TCATGA	2 cut(s)	127, 928
BspMAI	CTGCAG	2 cut(s)	539, 689
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	153, 290
BspQI	GCTCTTC	2 cut(s)	260, 855
BspTI	CTTAAG	1 cut(s)	458
BsrI	ACTGG	3 cut(s)	101, 325, 940
BssECI	CCNNGG	5 cut(s)	71, 87, 386, 892, 916
BssMI	GATC	5 cut(s)	130, 145, 295, 426, 691
BssNAI	GTATAC	1 cut(s)	487
BssT1I	CCWWGG	2 cut(s)	87, 386
Bst1107I	GTATAC	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	5 cut(s)	260, 653, 855, 867, 927
BstAFI	CTTAAG	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	244, 759
BstDEI	CTNAG	2 cut(s)	356, 650
BstDSI	CCRYGG	2 cut(s)	71, 386
BstF5I	GGATG	4 cut(s)	210, 592, 712, 742
BstKTI	GATC	5 cut(s)	133, 148, 298, 429, 694
BstMBI	GATC	5 cut(s)	130, 145, 295, 426, 691
BstNI	CCWGG	1 cut(s)	468
BstNSI	RCATGY	2 cut(s)	260, 493
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	2 cut(s)	535, 685
BstV1I	GCAGC	6 cut(s)	37, 40, 447, 492, 549, 671
BstV2I	GAAGAC	1 cut(s)	656
BstX2I	RGATCY	2 cut(s)	145, 691
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	2 cut(s)	145, 691
BstZ17I	GTATAC	1 cut(s)	487
BsuRI	GGCC	3 cut(s)	76, 903, 939
BtgI	CCRYGG	2 cut(s)	71, 386
BtgZI	GCGATG	1 cut(s)	611
BtsCI	GGATG	4 cut(s)	210, 592, 712, 742
BtsIMutI	CAGTG	2 cut(s)	399, 647
Cac8I	GCNNGC	2 cut(s)	244, 759
CciI	TCATGA	2 cut(s)	127, 928
Cfr13I	GGNCC	2 cut(s)	901, 937
CseI	GACGC	1 cut(s)	579
Csp6I	GTAC	3 cut(s)	94, 235, 625
CviAII	CATG	7 cut(s)	49, 128, 257, 387, 490, 499, 929
CviQI	GTAC	3 cut(s)	94, 235, 625
DdeI	CTNAG	2 cut(s)	356, 650
DpnI	GATC	5 cut(s)	132, 147, 297, 428, 693
DpnII	GATC	5 cut(s)	130, 145, 295, 426, 691
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	5 cut(s)	260, 653, 855, 867, 927
EarI	CTCTTC	5 cut(s)	260, 653, 855, 867, 927
Eco130I	CCWWGG	2 cut(s)	87, 386
Eco57I	CTGAAG	2 cut(s)	303, 619
Eco88I	CYCGRG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	466
EcoT14I	CCWWGG	2 cut(s)	87, 386
ErhI	CCWWGG	2 cut(s)	87, 386
FaeI	CATG	7 cut(s)	52, 131, 260, 390, 493, 502, 932
FatI	CATG	7 cut(s)	48, 127, 256, 386, 489, 498, 928
FauNDI	CATATG	1 cut(s)	558
FbaI	TGATCA	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	7 cut(s)	26, 29, 247, 436, 481, 538, 685
FokI	GGATG	4 cut(s)	197, 599, 719, 749
Fsp4HI	GCNGC	7 cut(s)	26, 29, 247, 436, 481, 538, 685
FspBI	CTAG	3 cut(s)	36, 42, 243
GluI	GCNGC	7 cut(s)	26, 29, 247, 436, 481, 538, 685
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	3 cut(s)	76, 903, 939
HgaI	GACGC	1 cut(s)	579
Hin1II	CATG	7 cut(s)	52, 131, 260, 390, 493, 502, 932
HincII	GTYRAC	2 cut(s)	418, 881
HindII	GTYRAC	2 cut(s)	418, 881
HinfI	GANTC	5 cut(s)	45, 106, 152, 194, 661
HphI	GGTGA	3 cut(s)	335, 436, 613
Hpy166II	GTNNAC	3 cut(s)	418, 487, 881
Hpy188I	TCNGA	6 cut(s)	105, 135, 157, 300, 357, 513
Hpy8I	GTNNAC	3 cut(s)	418, 487, 881
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	3 cut(s)	278, 326, 434
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	6 cut(s)	225, 480, 537, 556, 582, 687
HpyF3I	CTNAG	2 cut(s)	356, 650
Hsp92II	CATG	7 cut(s)	52, 131, 260, 390, 493, 502, 932
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	5 cut(s)	130, 145, 295, 426, 691
LguI	GCTCTTC	2 cut(s)	260, 855
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	6 cut(s)	37, 40, 447, 492, 549, 671
LweI	GCATC	3 cut(s)	109, 556, 577
MaeI	CTAG	3 cut(s)	36, 42, 243
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	5 cut(s)	132, 147, 297, 428, 693
MboI	GATC	5 cut(s)	130, 145, 295, 426, 691
MboII	GAAGA	8 cut(s)	277, 656, 670, 860, 869, 872, 884, 944
MflI	RGATCY	2 cut(s)	145, 691
MhlI	GDGCHC	1 cut(s)	867
MluCI	AATT	7 cut(s)	304, 362, 374, 410, 452, 507, 825
MlyI	GAGTC	2 cut(s)	203, 670
MmeI	TCCRAC	2 cut(s)	107, 180
MseI	TTAA	1 cut(s)	459
MspCI	CTTAAG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
NcoI	CCATGG	1 cut(s)	386
NdeI	CATATG	1 cut(s)	558
NdeII	GATC	5 cut(s)	130, 145, 295, 426, 691
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	7 cut(s)	52, 131, 260, 390, 493, 502, 932
NspI	RCATGY	2 cut(s)	260, 493
PagI	TCATGA	2 cut(s)	127, 928
PciI	ACATGT	2 cut(s)	256, 489
PciSI	GCTCTTC	2 cut(s)	260, 855
PfeI	GAWTC	3 cut(s)	45, 106, 152
PflFI	GACNNNGTC	1 cut(s)	924
PkrI	GCNGC	7 cut(s)	27, 30, 248, 437, 482, 539, 686
PleI	GAGTC	2 cut(s)	202, 669
PpsI	GAGTC	2 cut(s)	202, 669
PscI	ACATGT	2 cut(s)	256, 489
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspPI	GGNCC	2 cut(s)	901, 937
PstI	CTGCAG	2 cut(s)	539, 689
PsuI	RGATCY	2 cut(s)	145, 691
PsyI	GACNNNGTC	1 cut(s)	924
RsaI	GTAC	3 cut(s)	95, 236, 626
RsaNI	GTAC	3 cut(s)	94, 235, 625
SapI	GCTCTTC	2 cut(s)	260, 855
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	7 cut(s)	26, 29, 247, 436, 481, 538, 685
Sau3AI	GATC	5 cut(s)	130, 145, 295, 426, 691
Sau96I	GGNCC	2 cut(s)	901, 937
ScaI	AGTACT	2 cut(s)	95, 626
SchI	GAGTC	2 cut(s)	203, 670
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	3 cut(s)	109, 556, 577
SfcI	CTRYAG	2 cut(s)	535, 685
SmlI	CTYRAG	3 cut(s)	458, 620, 695
SmoI	CTYRAG	3 cut(s)	458, 620, 695
Sse9I	AATT	7 cut(s)	304, 362, 374, 410, 452, 507, 825
SsiI	CCGC	3 cut(s)	23, 247, 433
SspI	AATATT	1 cut(s)	750
SspMI	CTAG	3 cut(s)	36, 42, 243
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	2 cut(s)	87, 386
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	3 cut(s)	57, 150, 823
TasI	AATT	7 cut(s)	304, 362, 374, 410, 452, 507, 825
TatI	WGTACW	2 cut(s)	93, 624
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	3 cut(s)	45, 106, 152
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	406, 654
TseI	GCWGC	6 cut(s)	25, 28, 435, 480, 537, 684
TspDTI	ATGAA	7 cut(s)	43, 199, 317, 345, 515, 870, 945
TspRI	CASTG	2 cut(s)	406, 654
Tth111I	GACNNNGTC	1 cut(s)	924
Vha464I	CTTAAG	1 cut(s)	458
XapI	RAATTY	6 cut(s)	304, 362, 374, 410, 452, 507
XbaI	TCTAGA	1 cut(s)	41
XceI	RCATGY	2 cut(s)	260, 493
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	3 cut(s)	36, 42, 243
ZrmI	AGTACT	2 cut(s)	95, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.