Rw1G027800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003061
Physical Location & Seq
Reverse (-)
55269079 .. 55269963
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027800.1

Sequence Viewer

Length: 885 bp
ATGTTCATCGACCACTTCGCCCCACGGCCAAATCCAACCTTGGAGTACTGGCATCTGAATCCCACCCCCAGAAGTCGTCATGATCGGAAGTGGGAGGATCTAGAATCCGACTGCCTTGTCAATATCTTTCAAAGAGTTGGTATGGAGTCAATGCTGATGTTCATCCCCTTTGTGTGCAAATCGTGGCACAAAGCTAGCCGCACTCCTGCCGTCTGGAAGAGCCTCATCTTTCCTGAAGGTATTTTTGATCCGATGAATTTTGATACTGATACTGGTAAAAATGAAGGTTATTGGTTTGATTTGTTTCTGAGGAAATTTGCTCGGGAATTTGACATTCCATGGAGTAACTTCACTGTTCCCAAATTTGTCAACTTGGTGATCAACCGCAGCGAAGGAGGTGCTGAATTTCTCAAGCTACCTGGACTGATTTGCAGCGTATATATGTATGCCATGAAACAAATTCTGAACCACTTCAAAGACAACAACTGCAGCAACTTCAAAGGGTTGCATATGGCTGATGCCTATATTACTTGCAAGGATGCGTCGGCGATGGTGAGATGTGTGCCTGAGCTCAGGTACTTGTGCTTCAGGAGGGCAACACTGAGTAAGAAGAGTCTTCTCAAAATACTGCGAGGCTGCAGAGATCTTGAGGTTTTGGATGTGAGGGGTTGTACTGGTTTCAACGAGGATGACGAAGAAATATTGGAGCTTGCTTCTCATATTCCCAAGTTTATGTGTGCTGGTTCTCATCTCCAGCCTGATTTTGTTTCTGGTCGAATTATTCTGCCTTATGATGACGAAGATGATGATGAAGAGCACAAAGAAGAGGGTCAACAAGAGAACCGAGGACAGGGCCAACAAGAGAACCGAGGACAGGGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

294

Amino Acids

34.19

Weight (kDa)

5.64

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AciI CCGC 2 cut(s) 199, 385
AclWI GGATC 2 cut(s) 105, 242
AcoI YGGCCR 1 cut(s) 26
AcsI RAATTY 6 cut(s) 256, 314, 326, 362, 404, 459
AcuI CTGAAG 2 cut(s) 255, 571
AfaI GTAC 3 cut(s) 47, 578, 673
AfiI CCNNNNNNNGG 2 cut(s) 850, 874
AgsI TTSAA 4 cut(s) 131, 475, 499, 682
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 4 cut(s) 194, 415, 571, 709
AluI AGCT 4 cut(s) 194, 415, 571, 709
Alw21I GWGCWC 2 cut(s) 573, 819
AlwI GGATC 2 cut(s) 105, 242
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 3 cut(s) 26, 853, 877
ApeKI GCWGC 4 cut(s) 387, 432, 489, 636
ApoI RAATTY 6 cut(s) 256, 314, 326, 362, 404, 459
Asp700I GAANNNNTTC 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 853, 877
AsuHPI GGTGA 2 cut(s) 388, 565
AsuNHI GCTAGC 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 321
BanII GRGCYC 1 cut(s) 573
BarI GAAGNNNNNNTAC 2 cut(s) 569, 601
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 2 cut(s) 573, 819
BbvI GCAGC 4 cut(s) 399, 444, 501, 623
BccI CCATC 1 cut(s) 544
BceAI ACGGC 2 cut(s) 41, 194
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 1 cut(s) 420
BclI TGATCA 1 cut(s) 378
BfaI CTAG 2 cut(s) 101, 195
BfmI CTRYAG 2 cut(s) 487, 637
BglII AGATCT 1 cut(s) 643
BisI GCNGC 5 cut(s) 199, 388, 433, 490, 637
BlsI GCNGC 5 cut(s) 200, 389, 434, 491, 638
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 853, 877
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 3 cut(s) 61, 508, 529
BmtI GCTAGC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 1 cut(s) 737
Bpu10I CCTNAGC 2 cut(s) 567, 572
BpuEI CTTGAG 2 cut(s) 395, 668
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 5 cut(s) 23, 39, 338, 844, 868
Bsc4I CCNNNNNNNGG 2 cut(s) 850, 874
Bse1I ACTGG 4 cut(s) 53, 277, 679, 880
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 5 cut(s) 23, 39, 338, 844, 868
BseGI GGATG 4 cut(s) 162, 544, 664, 694
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 850, 874
BseMII CTCAG 4 cut(s) 299, 558, 586, 593
BseNI ACTGG 4 cut(s) 53, 277, 679, 880
BseXI GCAGC 4 cut(s) 399, 444, 501, 623
BshFI GGCC 3 cut(s) 28, 855, 879
BsiHKAI GWGCWC 2 cut(s) 573, 819
BsiHKCI CYCGRG 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 850, 874
BsnI GGCC 3 cut(s) 28, 855, 879
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 573, 819
Bsp143I GATC 5 cut(s) 82, 97, 247, 378, 643
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 2 cut(s) 199, 385
BspANI GGCC 3 cut(s) 28, 855, 879
BspCNI CTCAG 4 cut(s) 300, 559, 585, 594
BspHI TCATGA 1 cut(s) 79
BspMAI CTGCAG 2 cut(s) 491, 641
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 2 cut(s) 105, 242
BspQI GCTCTTC 2 cut(s) 212, 807
BsrI ACTGG 4 cut(s) 53, 277, 679, 880
BssECI CCNNGG 5 cut(s) 23, 39, 338, 844, 868
BssMI GATC 5 cut(s) 82, 97, 247, 378, 643
BssT1I CCWWGG 2 cut(s) 39, 338
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 4 cut(s) 212, 605, 807, 819
BstC8I GCNNGC 2 cut(s) 196, 711
BstDEI CTNAG 4 cut(s) 308, 567, 572, 602
BstDSI CCRYGG 2 cut(s) 23, 338
BstF5I GGATG 4 cut(s) 162, 544, 664, 694
BstKTI GATC 5 cut(s) 85, 100, 250, 381, 646
BstMBI GATC 5 cut(s) 82, 97, 247, 378, 643
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 2 cut(s) 487, 637
BstV1I GCAGC 4 cut(s) 399, 444, 501, 623
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 2 cut(s) 97, 643
BstYI RGATCY 2 cut(s) 97, 643
BsuRI GGCC 3 cut(s) 28, 855, 879
BtgI CCRYGG 2 cut(s) 23, 338
BtgZI GCGATG 1 cut(s) 563
BtsCI GGATG 4 cut(s) 162, 544, 664, 694
BtsIMutI CAGTG 2 cut(s) 351, 599
Cac8I GCNNGC 2 cut(s) 196, 711
CciI TCATGA 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 853, 877
CseI GACGC 1 cut(s) 531
Csp6I GTAC 3 cut(s) 46, 577, 672
CviAII CATG 3 cut(s) 80, 339, 451
CviQI GTAC 3 cut(s) 46, 577, 672
DdeI CTNAG 4 cut(s) 308, 567, 572, 602
DpnI GATC 5 cut(s) 84, 99, 249, 380, 645
DpnII GATC 5 cut(s) 82, 97, 247, 378, 643
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 26
Eam1104I CTCTTC 4 cut(s) 212, 605, 807, 819
EarI CTCTTC 4 cut(s) 212, 605, 807, 819
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 39, 338
Eco24I GRGCYC 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 571
Eco57I CTGAAG 2 cut(s) 255, 571
Eco88I CYCGRG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 39, 338
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 2 cut(s) 39, 338
FaeI CATG 3 cut(s) 83, 342, 454
FatI CATG 3 cut(s) 79, 338, 450
FauNDI CATATG 1 cut(s) 510
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 5 cut(s) 199, 388, 433, 490, 637
FokI GGATG 4 cut(s) 149, 551, 671, 701
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 5 cut(s) 199, 388, 433, 490, 637
FspBI CTAG 2 cut(s) 101, 195
GluI GCNGC 5 cut(s) 199, 388, 433, 490, 637
GsuI CTGGAG 1 cut(s) 737
HaeIII GGCC 3 cut(s) 28, 855, 879
HgaI GACGC 1 cut(s) 531
Hin1II CATG 3 cut(s) 83, 342, 454
HincII GTYRAC 2 cut(s) 370, 833
HindII GTYRAC 2 cut(s) 370, 833
HinfI GANTC 4 cut(s) 58, 104, 146, 613
HphI GGTGA 2 cut(s) 388, 565
Hpy166II GTNNAC 2 cut(s) 370, 833
Hpy188I TCNGA 6 cut(s) 57, 87, 109, 252, 309, 465
Hpy188III TCNNGA 7 cut(s) 80, 101, 214, 233, 323, 589, 647
Hpy8I GTNNAC 2 cut(s) 370, 833
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 3 cut(s) 230, 278, 386
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 6 cut(s) 177, 432, 489, 508, 534, 639
HpyF3I CTNAG 4 cut(s) 308, 567, 572, 602
Hsp92II CATG 3 cut(s) 83, 342, 454
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 5 cut(s) 82, 97, 247, 378, 643
LguI GCTCTTC 2 cut(s) 212, 807
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 4 cut(s) 399, 444, 501, 623
LweI GCATC 3 cut(s) 61, 508, 529
MaeI CTAG 2 cut(s) 101, 195
MaeIII GTNAC 1 cut(s) 344
MalI GATC 5 cut(s) 84, 99, 249, 380, 645
MboI GATC 5 cut(s) 82, 97, 247, 378, 643
MboII GAAGA 7 cut(s) 229, 608, 622, 707, 812, 824, 836
MflI RGATCY 2 cut(s) 97, 643
MhlI GDGCHC 2 cut(s) 573, 819
MluCI AATT 7 cut(s) 256, 314, 326, 362, 404, 459, 777
MlyI GAGTC 2 cut(s) 155, 622
MmeI TCCRAC 2 cut(s) 59, 132
MroXI GAANNNNTTC 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
NcoI CCATGG 1 cut(s) 338
NdeI CATATG 1 cut(s) 510
NdeII GATC 5 cut(s) 82, 97, 247, 378, 643
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 3 cut(s) 83, 342, 454
PagI TCATGA 1 cut(s) 79
PciSI GCTCTTC 2 cut(s) 212, 807
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 2 cut(s) 58, 104
PkrI GCNGC 5 cut(s) 200, 389, 434, 491, 638
PleI GAGTC 2 cut(s) 154, 621
PpsI GAGTC 2 cut(s) 154, 621
Psp124BI GAGCTC 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspPI GGNCC 2 cut(s) 853, 877
PstI CTGCAG 2 cut(s) 491, 641
PsuI RGATCY 2 cut(s) 97, 643
RsaI GTAC 3 cut(s) 47, 578, 673
RsaNI GTAC 3 cut(s) 46, 577, 672
SacI GAGCTC 1 cut(s) 573
SapI GCTCTTC 2 cut(s) 212, 807
SatI GCNGC 5 cut(s) 199, 388, 433, 490, 637
Sau3AI GATC 5 cut(s) 82, 97, 247, 378, 643
Sau96I GGNCC 2 cut(s) 853, 877
ScaI AGTACT 1 cut(s) 47
SchI GAGTC 2 cut(s) 155, 622
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 2 cut(s) 573, 819
SfaNI GCATC 3 cut(s) 61, 508, 529
SfcI CTRYAG 2 cut(s) 487, 637
SmlI CTYRAG 2 cut(s) 410, 647
SmoI CTYRAG 2 cut(s) 410, 647
Sse9I AATT 7 cut(s) 256, 314, 326, 362, 404, 459, 777
SsiI CCGC 2 cut(s) 199, 385
SspI AATATT 1 cut(s) 702
SspMI CTAG 2 cut(s) 101, 195
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 2 cut(s) 39, 338
TaaI ACNGT 1 cut(s) 355
TaqI TCGA 2 cut(s) 9, 775
TasI AATT 7 cut(s) 256, 314, 326, 362, 404, 459, 777
TatI WGTACW 2 cut(s) 45, 671
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 2 cut(s) 58, 104
TscAI CASTG 2 cut(s) 358, 606
TseI GCWGC 4 cut(s) 387, 432, 489, 636
TspDTI ATGAA 5 cut(s) 151, 269, 297, 467, 825
TspRI CASTG 2 cut(s) 358, 606
XapI RAATTY 6 cut(s) 256, 314, 326, 362, 404, 459
XbaI TCTAGA 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 2 cut(s) 101, 195
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.