Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

25097577 .. 25098380

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1173200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGACAGACCGAGGAAGCTGAATCACCGGCGGAACCTCAACCGCAGCTGGGAGGACATGGAACAGAACTGTTTGGCTCAAGTGTTCATCCGAGTCGGACTGGAGTCGCTCCTCCTTTTCATCCCGTTCGTGTGCAAATCCTGGTACAGCGCCACCAAAAACCCCGCCTGCTGGGAGCGCATCATTTTCCCCGACGCCAATGACGACGTCACCGATCCTTTCAGCGTCAACGACGCCGTTTTGGACCGCCCCTGGACCCGGGCGAATCGAACCGAAAATCAGCGTTTCGACGTCTTCATCCGGACATTCGCGCGCGAAAATGACATTTTGTGGCGATACTTCTCGATCACGAATTTCATGAAAATGGTCATCGACCGCAGCGCTGGCAGCCTCCGGTTCCTGAAAATCCCTGGCCTCCTCAGCCACTACATGTTCGCGATCCACAAAACCCTCCAGCACGTCGGCAAGAGCTGCAAGAACTTCGCGGGGCTGCAGCTGACAAACGCAGCGATAGGGCGAAGCGAGGCGGAGGCGATCGTGACATTTGTGCCCAACCTGAGCTTTCTGTCTCTGAGGAGGTCGCAGATCCCGAGGGAGTTGATGGTGATGCTGCTCAAGGGGATGAAGAACCTGGTGCTGTTGGACGTGAGGGAGTGTGTTGGGTTCGACCAGCAGGACGAGGAGATTTTGCGGCTGGCTTCGGAGATTCCTACGTTTCTGTGTCGGGGGGCGAGGATTTGTGCCCAGGAGCACCTGTTGCGTATGTCGGATGGGTCATTGGTTCATGTCATTGCCGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

268

Amino Acids

30.89

Weight (kDa)

8.89

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	210, 294
AccII	CGCG	5 cut(s)	311, 313, 315, 437, 485
AccIII	TCCGGA	1 cut(s)	300
AciI	CCGC	8 cut(s)	31, 43, 165, 247, 376, 485, 527, 691
AclWI	GGATC	3 cut(s)	209, 433, 580
AcsI	RAATTY	1 cut(s)	352
AcyI	GRCGYC	4 cut(s)	195, 207, 234, 291
AfaI	GTAC	1 cut(s)	146
AfeI	AGCGCT	1 cut(s)	382
AfiI	CCNNNNNNNGG	3 cut(s)	49, 171, 258
AflIII	ACRYGT	1 cut(s)	429
AjiI	CACGTC	2 cut(s)	460, 646
AjnI	CCWGG	5 cut(s)	140, 251, 409, 630, 744
AluBI	AGCT	5 cut(s)	19, 48, 471, 496, 561
AluI	AGCT	5 cut(s)	19, 48, 471, 496, 561
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	3 cut(s)	209, 433, 580
Ama87I	CYCGRG	2 cut(s)	258, 589
Aor13HI	TCCGGA	1 cut(s)	300
Aor51HI	AGCGCT	1 cut(s)	382
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	8 cut(s)	45, 378, 387, 471, 490, 493, 506, 610
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	5 cut(s)	152, 180, 313, 315, 383
AspS9I	GGNCC	2 cut(s)	244, 255
AsuC2I	CCSGG	2 cut(s)	259, 260
AsuHPI	GGTGA	3 cut(s)	17, 202, 616
AvaI	CYCGRG	2 cut(s)	258, 589
AvaII	GGWCC	2 cut(s)	244, 255
BaeGI	GKGCMC	2 cut(s)	552, 745
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	8 cut(s)	57, 390, 399, 458, 477, 505, 518, 597
BccI	CCATC	2 cut(s)	595, 764
BceAI	ACGGC	2 cut(s)	221, 779
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciT130I	CCWGG	5 cut(s)	142, 253, 411, 632, 746
BcnI	CCSGG	2 cut(s)	259, 260
BcoDI	GTCTC	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	2 cut(s)	153, 384
BisI	GCNGC	9 cut(s)	46, 379, 388, 472, 491, 494, 507, 611, 692
BlsI	GCNGC	9 cut(s)	47, 380, 389, 473, 492, 495, 508, 612, 693
Bme1390I	CCNGG	7 cut(s)	142, 253, 259, 260, 411, 632, 746
Bme18I	GGWCC	2 cut(s)	244, 255
BmeT110I	CYCGRG	2 cut(s)	258, 589
BmgBI	CACGTC	2 cut(s)	460, 646
BmgT120I	GGNCC	2 cut(s)	244, 255
BmiI	GGNNCC	3 cut(s)	35, 257, 398
BmrFI	CCNGG	7 cut(s)	142, 253, 259, 260, 411, 632, 746
BmsI	GCATC	2 cut(s)	189, 597
BoxI	GACNNNNGTC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	286
BpmI	CTGGAG	2 cut(s)	122, 437
Bpu10I	CCTNAGC	2 cut(s)	419, 557
BpuEI	CTTGAG	2 cut(s)	63, 599
BpuMI	CCSGG	2 cut(s)	259, 260
BsaHI	GRCGYC	4 cut(s)	195, 207, 234, 291
BsaJI	CCNNGG	7 cut(s)	11, 251, 258, 409, 590, 744, 795
BsaWI	WCCGGW	2 cut(s)	300, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 171, 258
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	789
BseAI	TCCGGA	1 cut(s)	300
BseBI	CCWGG	5 cut(s)	142, 253, 411, 632, 746
BseDI	CCNNGG	7 cut(s)	11, 251, 258, 409, 590, 744, 795
BseGI	GGATG	5 cut(s)	87, 120, 297, 627, 775
BseLI	CCNNNNNNNGG	3 cut(s)	49, 171, 258
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	3 cut(s)	433, 548, 563
BseNI	ACTGG	1 cut(s)	105
BsePI	GCGCGC	1 cut(s)	311
BseRI	GAGGAG	4 cut(s)	101, 407, 589, 695
BseSI	GKGCMC	2 cut(s)	552, 745
BseXI	GCAGC	8 cut(s)	57, 390, 399, 458, 477, 505, 518, 597
BseYI	CCCAGC	2 cut(s)	48, 171
Bsh1236I	CGCG	5 cut(s)	311, 313, 315, 437, 485
Bsh1285I	CGRYCG	2 cut(s)	376, 537
BshFI	GGCC	1 cut(s)	414
BsiEI	CGRYCG	2 cut(s)	376, 537
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	2 cut(s)	258, 589
BsiSI	CCGG	4 cut(s)	28, 259, 301, 394
BslI	CCNNNNNNNGG	3 cut(s)	49, 171, 258
BsmAI	GTCTC	1 cut(s)	573
BsnI	GGCC	1 cut(s)	414
BsoBI	CYCGRG	2 cut(s)	258, 589
Bsp1286I	GDGCHC	3 cut(s)	552, 745, 753
Bsp13I	TCCGGA	1 cut(s)	300
Bsp143I	GATC	5 cut(s)	214, 345, 438, 534, 585
Bsp68I	TCGCGA	1 cut(s)	437
BspACI	CCGC	8 cut(s)	31, 43, 165, 247, 376, 485, 527, 691
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	3 cut(s)	432, 549, 564
BspEI	TCCGGA	1 cut(s)	300
BspFNI	CGCG	5 cut(s)	311, 313, 315, 437, 485
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	35, 257, 398
BspMAI	CTGCAG	1 cut(s)	495
BspPI	GGATC	3 cut(s)	209, 433, 580
BsrDI	GCAATG	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	7 cut(s)	11, 251, 258, 409, 590, 744, 795
BssHII	GCGCGC	1 cut(s)	311
BssMI	GATC	5 cut(s)	214, 345, 438, 534, 585
BssNI	GRCGYC	4 cut(s)	195, 207, 234, 291
Bst2UI	CCWGG	5 cut(s)	142, 253, 411, 632, 746
Bst4CI	ACNGT	1 cut(s)	71
BstACI	GRCGYC	4 cut(s)	195, 207, 234, 291
BstAPI	GCANNNNNTGC	2 cut(s)	471, 757
BstC8I	GCNNGC	4 cut(s)	169, 313, 385, 696
BstDEI	CTNAG	3 cut(s)	419, 557, 572
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	5 cut(s)	87, 120, 297, 627, 775
BstFNI	CGCG	5 cut(s)	311, 313, 315, 437, 485
BstH2I	RGCGCY	2 cut(s)	153, 384
BstHHI	GCGC	5 cut(s)	152, 180, 313, 315, 383
BstKTI	GATC	5 cut(s)	217, 348, 441, 537, 588
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	5 cut(s)	214, 345, 438, 534, 585
BstMCI	CGRYCG	2 cut(s)	376, 537
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 384, 387, 420, 471, 757
BstNI	CCWGG	5 cut(s)	142, 253, 411, 632, 746
BstNSI	RCATGY	1 cut(s)	433
BstPAI	GACNNNNGTC	1 cut(s)	103
BstSCI	CCNGG	7 cut(s)	140, 251, 257, 258, 409, 630, 744
BstSFI	CTRYAG	1 cut(s)	491
BstSLI	GKGCMC	2 cut(s)	552, 745
BstUI	CGCG	5 cut(s)	311, 313, 315, 437, 485
BstV1I	GCAGC	8 cut(s)	57, 390, 399, 458, 477, 505, 518, 597
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	795
BtrI	CACGTC	2 cut(s)	460, 646
BtsCI	GGATG	5 cut(s)	87, 120, 297, 627, 775
BtuMI	TCGCGA	1 cut(s)	437
Cac8I	GCNNGC	4 cut(s)	169, 313, 385, 696
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	5 cut(s)	152, 180, 313, 315, 383
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	244, 255
Cfr9I	CCCGGG	1 cut(s)	258
CseI	GACGC	3 cut(s)	203, 214, 242
CsiI	ACCWGGT	1 cut(s)	630
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	4 cut(s)	58, 358, 430, 785
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	419, 557, 572
DpnI	GATC	5 cut(s)	216, 347, 440, 536, 587
DpnII	GATC	5 cut(s)	214, 345, 438, 534, 585
EciI	GGCGGA	2 cut(s)	46, 542
Eco47I	GGWCC	2 cut(s)	244, 255
Eco47III	AGCGCT	1 cut(s)	382
Eco88I	CYCGRG	2 cut(s)	258, 589
EcoRII	CCWGG	5 cut(s)	140, 251, 409, 630, 744
FaeI	CATG	4 cut(s)	61, 361, 433, 788
FaiI	YATR	5 cut(s)	59, 359, 431, 764, 786
FatI	CATG	4 cut(s)	57, 357, 429, 784
FauI	CCCGC	2 cut(s)	172, 478
Fnu4HI	GCNGC	9 cut(s)	46, 379, 388, 472, 491, 494, 507, 611, 692
FokI	GGATG	5 cut(s)	74, 107, 284, 634, 782
Fsp4HI	GCNGC	9 cut(s)	46, 379, 388, 472, 491, 494, 507, 611, 692
GlaI	GCGC	5 cut(s)	151, 179, 312, 314, 382
GluI	GCNGC	9 cut(s)	46, 379, 388, 472, 491, 494, 507, 611, 692
GsaI	CCCAGC	2 cut(s)	52, 175
GsuI	CTGGAG	2 cut(s)	122, 437
HaeII	RGCGCY	2 cut(s)	153, 384
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	4 cut(s)	28, 259, 301, 394
HgaI	GACGC	3 cut(s)	203, 214, 242
HhaI	GCGC	5 cut(s)	152, 180, 313, 315, 383
Hin1I	GRCGYC	4 cut(s)	195, 207, 234, 291
Hin1II	CATG	4 cut(s)	61, 361, 433, 788
Hin6I	GCGC	5 cut(s)	150, 178, 311, 313, 381
HinP1I	GCGC	5 cut(s)	150, 178, 311, 313, 381
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	5 cut(s)	22, 93, 104, 265, 706
HpaII	CCGG	4 cut(s)	28, 259, 301, 394
HphI	GGTGA	3 cut(s)	17, 202, 616
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	5 cut(s)	92, 98, 573, 703, 769
Hpy188III	TCNNGA	8 cut(s)	301, 343, 349, 358, 400, 436, 538, 589
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	5 cut(s)	197, 209, 236, 293, 464
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	5 cut(s)	207, 291, 459, 645, 713
HpyCH4V	TGCA	3 cut(s)	135, 474, 493
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 384, 387, 420, 471, 757
HpyF3I	CTNAG	3 cut(s)	419, 557, 572
HpySE526I	ACGT	5 cut(s)	207, 291, 459, 645, 713
Hsp92I	GRCGYC	4 cut(s)	195, 207, 234, 291
Hsp92II	CATG	4 cut(s)	61, 361, 433, 788
HspAI	GCGC	5 cut(s)	150, 178, 311, 313, 381
Kpn2I	TCCGGA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	214, 345, 438, 534, 585
LmnI	GCTCC	3 cut(s)	114, 175, 748
Lsp1109I	GCAGC	8 cut(s)	57, 390, 399, 458, 477, 505, 518, 597
LweI	GCATC	2 cut(s)	189, 597
MabI	ACCWGGT	1 cut(s)	630
MaeII	ACGT	5 cut(s)	207, 291, 459, 645, 713
MaeIII	GTNAC	2 cut(s)	208, 538
MalI	GATC	5 cut(s)	216, 347, 440, 536, 587
MauBI	CGCGCGCG	1 cut(s)	311
MboI	GATC	5 cut(s)	214, 345, 438, 534, 585
MboII	GAAGA	2 cut(s)	286, 637
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	3 cut(s)	552, 745, 753
MluCI	AATT	1 cut(s)	352
MlyI	GAGTC	2 cut(s)	102, 113
MmeI	TCCRAC	3 cut(s)	76, 621, 747
MroI	TCCGGA	1 cut(s)	300
MslI	CAYNNNNRTG	2 cut(s)	362, 794
MspA1I	CMGCKG	2 cut(s)	48, 496
MspI	CCGG	4 cut(s)	28, 259, 301, 394
MspR9I	CCNGG	7 cut(s)	142, 253, 259, 260, 411, 632, 746
MvaI	CCWGG	5 cut(s)	142, 253, 411, 632, 746
MvnI	CGCG	5 cut(s)	311, 313, 315, 437, 485
MwoI	GCNNNNNNNGC	6 cut(s)	177, 384, 387, 420, 471, 757
NciI	CCSGG	2 cut(s)	259, 260
NdeII	GATC	5 cut(s)	214, 345, 438, 534, 585
NlaIII	CATG	4 cut(s)	61, 361, 433, 788
NlaIV	GGNNCC	3 cut(s)	35, 257, 398
NmuCI	GTSAC	2 cut(s)	208, 538
NruI	TCGCGA	1 cut(s)	437
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	1 cut(s)	357
PauI	GCGCGC	1 cut(s)	311
PciI	ACATGT	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 210, 587
PfeI	GAWTC	3 cut(s)	22, 265, 706
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	9 cut(s)	47, 380, 389, 473, 492, 495, 508, 612, 693
Ple19I	CGATCG	1 cut(s)	537
PleI	GAGTC	2 cut(s)	101, 112
PpsI	GAGTC	2 cut(s)	101, 112
PscI	ACATGT	1 cut(s)	429
PshAI	GACNNNNGTC	1 cut(s)	103
Psp6I	CCWGG	5 cut(s)	140, 251, 409, 630, 744
PspFI	CCCAGC	2 cut(s)	48, 171
PspGI	CCWGG	5 cut(s)	140, 251, 409, 630, 744
PspN4I	GGNNCC	3 cut(s)	35, 257, 398
PspPI	GGNCC	2 cut(s)	244, 255
PstI	CTGCAG	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	585
PsyI	GACNNNGTC	1 cut(s)	206
PteI	GCGCGC	1 cut(s)	311
PvuI	CGATCG	1 cut(s)	537
PvuII	CAGCTG	2 cut(s)	48, 496
RruI	TCGCGA	1 cut(s)	437
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	2 cut(s)	362, 794
SatI	GCNGC	9 cut(s)	46, 379, 388, 472, 491, 494, 507, 611, 692
Sau3AI	GATC	5 cut(s)	214, 345, 438, 534, 585
Sau96I	GGNCC	2 cut(s)	244, 255
SchI	GAGTC	2 cut(s)	102, 113
ScrFI	CCNGG	7 cut(s)	142, 253, 259, 260, 411, 632, 746
SduI	GDGCHC	3 cut(s)	552, 745, 753
SexAI	ACCWGGT	1 cut(s)	630
SfaNI	GCATC	2 cut(s)	189, 597
SfcI	CTRYAG	1 cut(s)	491
SgrAI	CRCCGGYG	1 cut(s)	27
SinI	GGWCC	2 cut(s)	244, 255
SmaI	CCCGGG	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	362, 794
SmlI	CTYRAG	2 cut(s)	78, 614
SmoI	CTYRAG	2 cut(s)	78, 614
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	8 cut(s)	31, 43, 165, 247, 376, 485, 527, 691
StyD4I	CCNGG	7 cut(s)	140, 251, 257, 258, 409, 630, 744
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	5 cut(s)	210, 294, 462, 648, 716
TaqI	TCGA	5 cut(s)	268, 288, 344, 372, 666
TaqII	GACCGA	1 cut(s)	25
TasI	AATT	1 cut(s)	352
TauI	GCSGC	1 cut(s)	694
TfiI	GAWTC	3 cut(s)	22, 265, 706
TseFI	GTSAC	2 cut(s)	208, 538
TseI	GCWGC	8 cut(s)	45, 378, 387, 471, 490, 493, 506, 610
Tsp45I	GTSAC	2 cut(s)	208, 538
TspDTI	ATGAA	7 cut(s)	76, 109, 286, 346, 374, 638, 773
TspMI	CCCGGG	1 cut(s)	258
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	244, 255
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	433
XmaI	CCCGGG	1 cut(s)	258
ZraI	GACGTC	2 cut(s)	208, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.