Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

53520207 .. 53520854

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG307800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTGGAAACGCCTTATCTTCCCAGACACCGAGAAAGGAACGACCGAACGATTGATCCTTGGAGCTTAGAAATTGGCACTAATGACCCTTGGAATTATCATAATGAAACTGAGAGTTCTCATTTGGAGTACTTTATAAGAAGGTTTGCCTGCGAATTTGAACTTGATTGGAGGCTTTTCTCGGTCCCTAAATTTATCGAATATGTTATCAATCGTAGCAACGGAGAAACGCAATTTCTCAAGCTACCTGGAATTTACAGTAGCTATAGCTTTGCTATAAGTGAAATTCTGAAACACATCAACAAGAAGTGCAGGAAGTTTTGTGGGTTGCATCTGTCTGGTGCATCCATCAATGAAGATGAGGCGACAGCAATTGTAAAATTTGTGCCTAATGTTAAGTACTTGTGCTTGAGGAAGTCACGCATCAGTAGGAATAATCTGGTGAAAATACTGAAAGGCTGCAAAGACCTTGAGCTTTTGGATGTGAGGAAGTGTAGTGGTTTTGATGAGGGTGATGAGGAAATATTGGAGCTTGCATCTCACATTCCTAAATTCATGTATGCTGGTTCTAAACACCACTACATCTTTGAGATTGATCCCCTAATTGAGATTTATGGGGAGGAAGACGAAGACGAAGAGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

215

Amino Acids

25.26

Weight (kDa)

5.36

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AclWI	GGATC	2 cut(s)	50, 590
AcsI	RAATTY	6 cut(s)	155, 191, 252, 285, 380, 551
AfaI	GTAC	2 cut(s)	131, 401
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	40, 72
AluBI	AGCT	6 cut(s)	66, 244, 264, 270, 475, 532
AluI	AGCT	6 cut(s)	66, 244, 264, 270, 475, 532
AlwI	GGATC	2 cut(s)	50, 590
ApeKI	GCWGC	1 cut(s)	459
ApoI	RAATTY	6 cut(s)	155, 191, 252, 285, 380, 551
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	454, 524
AvaII	GGWCC	1 cut(s)	184
BbsI	GAAGAC	2 cut(s)	630, 636
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	265
BisI	GCNGC	1 cut(s)	460
BlsI	GCNGC	1 cut(s)	461
BmcAI	AGTACT	2 cut(s)	131, 401
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	4 cut(s)	340, 353, 432, 545
BpiI	GAAGAC	2 cut(s)	630, 636
BpuEI	CTTGAG	3 cut(s)	224, 430, 491
BsaJI	CCNNGG	2 cut(s)	59, 89
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	59, 89
BseGI	GGATG	2 cut(s)	344, 487
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	331
Bsh1285I	CGRYCG	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	55, 595
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	2 cut(s)	50, 590
BssECI	CCNNGG	2 cut(s)	59, 89
BssMI	GATC	2 cut(s)	55, 595
BssT1I	CCWWGG	2 cut(s)	59, 89
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	630
BstC8I	GCNNGC	2 cut(s)	151, 534
BstDEI	CTNAG	2 cut(s)	67, 111
BstF5I	GGATG	2 cut(s)	344, 487
BstKTI	GATC	2 cut(s)	58, 598
BstMBI	GATC	2 cut(s)	55, 595
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	2 cut(s)	630, 636
BtsCI	GGATG	2 cut(s)	344, 487
Cac8I	GCNNGC	2 cut(s)	151, 534
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	130, 400
CviAII	CATG	1 cut(s)	556
CviJI	RGCY	9 cut(s)	66, 175, 244, 264, 270, 459, 475, 532, 641
CviKI_1	RGCY	9 cut(s)	66, 175, 244, 264, 270, 459, 475, 532, 641
CviQI	GTAC	2 cut(s)	130, 400
DdeI	CTNAG	2 cut(s)	67, 111
DpnI	GATC	2 cut(s)	57, 597
DpnII	GATC	2 cut(s)	55, 595
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	2 cut(s)	59, 89
Eco47I	GGWCC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	59, 89
ErhI	CCWWGG	2 cut(s)	59, 89
FaeI	CATG	1 cut(s)	559
FaiI	YATR	8 cut(s)	102, 137, 204, 267, 278, 557, 561, 615
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	460
FokI	GGATG	2 cut(s)	331, 494
Fsp4HI	GCNGC	1 cut(s)	460
GluI	GCNGC	1 cut(s)	460
Hin1II	CATG	1 cut(s)	559
HphI	GGTGA	2 cut(s)	454, 524
Hpy188I	TCNGA	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	5 cut(s)	312, 331, 344, 462, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	67, 111
Hsp92II	CATG	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	55, 595
LmnI	GCTCC	2 cut(s)	63, 529
LpnPI	CCDG	8 cut(s)	37, 163, 234, 261, 298, 324, 425, 549
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	4 cut(s)	340, 353, 432, 545
MaeIII	GTNAC	1 cut(s)	417
MalI	GATC	2 cut(s)	57, 597
MboI	GATC	2 cut(s)	55, 595
MboII	GAAGA	5 cut(s)	11, 368, 635, 641, 647
MfeI	CAATTG	1 cut(s)	372
MnlI	CCTC	8 cut(s)	165, 355, 405, 480, 502, 511, 613, 631
MseI	TTAA	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	55, 595
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	184
RsaI	GTAC	2 cut(s)	131, 401
RsaNI	GTAC	2 cut(s)	130, 400
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	1 cut(s)	460
Sau3AI	GATC	2 cut(s)	55, 595
Sau96I	GGNCC	1 cut(s)	184
ScaI	AGTACT	2 cut(s)	131, 401
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	9 cut(s)	68, 146, 246, 250, 266, 272, 471, 477, 534
SfaNI	GCATC	4 cut(s)	340, 353, 432, 545
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	3 cut(s)	239, 409, 470
SmoI	CTYRAG	3 cut(s)	239, 409, 470
SspI	AATATT	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	2 cut(s)	59, 89
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	2 cut(s)	60, 172
TatI	WGTACW	2 cut(s)	129, 399
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	417
TseI	GCWGC	1 cut(s)	459
Tsp45I	GTSAC	1 cut(s)	417
TspDTI	ATGAA	3 cut(s)	120, 369, 544
TspGWI	ACGGA	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	6 cut(s)	155, 191, 252, 285, 380, 551
ZrmI	AGTACT	2 cut(s)	131, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.