Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

24431817 .. 24432638

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G212400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

AAAGACCCAAAATCCACCATGGACAAGCTCCTCAATCTCAATTCCAAGCGCCAGAGAGATCGAAAATGGGAGGACCTAGACCCAGACTGTTTGGCCAACGTGTTCGTCAAAGTCGGAATTGAGTCTCTGCTCTTGTTCGTCCCCTTCGTCTGCAAGTCCTGGTACAGAGCAAGCCAGAACCCCGTGTGCTGGGAACGGCTCGTCTTCCCAGACAGCGAAGAAGAAGCTACAGACGATCCATGGAGCCTCGACGACAATGTGGCCAATCTTCCGTGGACCTACGCCAACCGCATCGAAGGCCAGTCCTTCGATTACTTCGTGAGGAGATTCGCGCGCGAGTTTCAAATCGACTGGAGCCGTTTCTCAATCCCTAGCTTCATCAAAATGGTCATCAATCGCAGCGGCGGCAACGCCAAGTTTCTGAAAATCCCCGGGATTTGCAGCCACTACGTGAACGCCATTGAAAAAATACTGGAACACATCAGCAAGAACTGTAAGGGCTTCGTTGGGCTGCACGTGGCCTACGCCACGATTGGCACGAGCGAGGCCTCTGCGATCGTGAAATTTGTGCCCAATTTGAAGTACATGTGCTTCAGGAAGTCGTGCCTGGAGAAGAACGATCTTGTGATGTTGCTGAAGGAGTGCAGAGAGCTTGTGCTTCTGGATGTGAGGGAGTGCGAGGGTTTTGACGAGCGTGATGAGGAGATTTTGAAGCTGGCTTCTCATATCTCTAAGTTTAGGTGTAAGGGTTCCAAAACGCACGTTTTGAGGGACGATGATTTGGCGGTTGAAGATCTTGAAATAATTGAGATTGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

274

Amino Acids

31.64

Weight (kDa)

5.57

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	332, 334, 336
AciI	CCGC	4 cut(s)	289, 402, 405, 785
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	2 cut(s)	93, 261
AcsI	RAATTY	1 cut(s)	563
AcuI	CTGAAG	2 cut(s)	577, 656
AcvI	CACGTG	1 cut(s)	517
AdeI	CACNNNGTG	1 cut(s)	451
AfaI	GTAC	2 cut(s)	164, 584
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflIII	ACRYGT	2 cut(s)	99, 585
AgsI	TTSAA	6 cut(s)	344, 464, 580, 712, 791, 800
AjnI	CCWGG	2 cut(s)	158, 606
AluBI	AGCT	5 cut(s)	28, 227, 375, 652, 715
AluI	AGCT	5 cut(s)	28, 227, 375, 652, 715
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	5 cut(s)	93, 261, 298, 519, 546
ApeKI	GCWGC	3 cut(s)	399, 441, 511
ApoI	RAATTY	1 cut(s)	563
AspLEI	GCGC	3 cut(s)	51, 334, 336
AspS9I	GGNCC	2 cut(s)	73, 276
AsuC2I	CCSGG	2 cut(s)	432, 433
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	2 cut(s)	73, 276
BaeGI	GKGCMC	1 cut(s)	573
BalI	TGGCCA	2 cut(s)	95, 263
BarI	GAAGNNNNNNTAC	2 cut(s)	575, 607
BauI	CACGAG	1 cut(s)	538
BbrPI	CACGTG	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	411, 453, 498
BceAI	ACGGC	2 cut(s)	212, 342
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	2 cut(s)	160, 608
BcnI	CCSGG	2 cut(s)	432, 433
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	2 cut(s)	77, 372
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	52
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	5 cut(s)	400, 403, 406, 442, 512
BlsI	GCNGC	5 cut(s)	401, 404, 407, 443, 513
Bme1390I	CCNGG	4 cut(s)	160, 432, 433, 608
Bme18I	GGWCC	2 cut(s)	73, 276
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	73, 276
BmiI	GGNNCC	3 cut(s)	245, 356, 751
BmrFI	CCNGG	4 cut(s)	160, 432, 433, 608
BmsI	GCATC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	373, 629
BpuMI	CCSGG	2 cut(s)	432, 433
BsaAI	YACGTR	2 cut(s)	451, 517
BsaJI	CCNNGG	5 cut(s)	18, 239, 272, 430, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	3 cut(s)	301, 356, 477
BseBI	CCWGG	2 cut(s)	160, 608
BseDI	CCNNGG	5 cut(s)	18, 239, 272, 430, 431
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	301, 356, 477
BsePI	GCGCGC	1 cut(s)	332
BseRI	GAGGAG	3 cut(s)	20, 337, 716
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	3 cut(s)	411, 453, 498
BseYI	CCCAGC	1 cut(s)	189
BsgI	GTGCAG	2 cut(s)	497, 664
Bsh1236I	CGCG	3 cut(s)	332, 334, 336
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	5 cut(s)	95, 263, 300, 521, 548
BsiEI	CGRYCG	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	125, 785
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	125, 785
BsnI	GGCC	5 cut(s)	95, 263, 300, 521, 548
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	58, 235, 555, 619, 793
Bsp19I	CCATGG	2 cut(s)	18, 239
BspACI	CCGC	4 cut(s)	289, 402, 405, 785
BspANI	GGCC	5 cut(s)	95, 263, 300, 521, 548
BspFNI	CGCG	3 cut(s)	332, 334, 336
BspLI	GGNNCC	3 cut(s)	245, 356, 751
BspPI	GGATC	1 cut(s)	230
BsrI	ACTGG	3 cut(s)	301, 356, 477
BssECI	CCNNGG	5 cut(s)	18, 239, 272, 430, 431
BssHII	GCGCGC	1 cut(s)	332
BssMI	GATC	5 cut(s)	58, 235, 555, 619, 793
BssSI	CACGAG	1 cut(s)	538
BssT1I	CCWWGG	2 cut(s)	18, 239
Bst2BI	CACGAG	1 cut(s)	538
Bst2UI	CCWGG	2 cut(s)	160, 608
Bst4CI	ACNGT	2 cut(s)	89, 494
BstBAI	YACGTR	2 cut(s)	451, 517
BstC8I	GCNNGC	3 cut(s)	172, 334, 717
BstDEI	CTNAG	1 cut(s)	732
BstDSI	CCRYGG	3 cut(s)	18, 239, 272
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	3 cut(s)	332, 334, 336
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	3 cut(s)	51, 334, 336
BstKTI	GATC	5 cut(s)	61, 238, 558, 622, 796
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	5 cut(s)	58, 235, 555, 619, 793
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 405
BstNI	CCWGG	2 cut(s)	160, 608
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	4 cut(s)	158, 430, 431, 606
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	573
BstUI	CGCG	3 cut(s)	332, 334, 336
BstV1I	GCAGC	3 cut(s)	411, 453, 498
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
BsuRI	GGCC	5 cut(s)	95, 263, 300, 521, 548
BtgI	CCRYGG	3 cut(s)	18, 239, 272
BtsCI	GGATG	1 cut(s)	670
Cac8I	GCNNGC	3 cut(s)	172, 334, 717
CfoI	GCGC	3 cut(s)	51, 334, 336
Cfr13I	GGNCC	2 cut(s)	73, 276
Cfr9I	CCCGGG	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	163, 583
CviAII	CATG	3 cut(s)	19, 240, 586
CviQI	GTAC	2 cut(s)	163, 583
DdeI	CTNAG	1 cut(s)	732
DpnI	GATC	5 cut(s)	60, 237, 557, 621, 795
DpnII	GATC	5 cut(s)	58, 235, 555, 619, 793
DraIII	CACNNNGTG	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	93, 261
Eco130I	CCWWGG	2 cut(s)	18, 239
Eco147I	AGGCCT	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	73, 276
Eco57I	CTGAAG	2 cut(s)	577, 656
Eco72I	CACGTG	1 cut(s)	517
Eco88I	CYCGRG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	158, 606
EcoT14I	CCWWGG	2 cut(s)	18, 239
ErhI	CCWWGG	2 cut(s)	18, 239
FaeI	CATG	3 cut(s)	22, 243, 589
FaiI	YATR	4 cut(s)	20, 241, 587, 726
FaqI	GGGAC	2 cut(s)	125, 785
FatI	CATG	3 cut(s)	18, 239, 585
Fnu4HI	GCNGC	5 cut(s)	400, 403, 406, 442, 512
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	5 cut(s)	400, 403, 406, 442, 512
FspBI	CTAG	2 cut(s)	77, 372
GlaI	GCGC	3 cut(s)	50, 333, 335
GluI	GCNGC	5 cut(s)	400, 403, 406, 442, 512
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	2 cut(s)	373, 629
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	5 cut(s)	95, 263, 300, 521, 548
HapII	CCGG	1 cut(s)	432
HhaI	GCGC	3 cut(s)	51, 334, 336
Hin1II	CATG	3 cut(s)	22, 243, 589
Hin6I	GCGC	3 cut(s)	49, 332, 334
HinP1I	GCGC	3 cut(s)	49, 332, 334
HinfI	GANTC	2 cut(s)	122, 327
HpaII	CCGG	1 cut(s)	432
Hpy166II	GTNNAC	2 cut(s)	276, 454
Hpy188I	TCNGA	2 cut(s)	116, 423
Hpy188III	TCNNGA	5 cut(s)	319, 559, 595, 662, 797
Hpy8I	GTNNAC	2 cut(s)	276, 454
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	4 cut(s)	154, 290, 316, 631
HpyCH4III	ACNGT	2 cut(s)	89, 494
HpyCH4IV	ACGT	4 cut(s)	99, 450, 516, 762
HpyCH4V	TGCA	4 cut(s)	153, 441, 514, 645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 405
HpyF3I	CTNAG	1 cut(s)	732
HpySE526I	ACGT	4 cut(s)	99, 450, 516, 762
Hsp92II	CATG	3 cut(s)	22, 243, 589
HspAI	GCGC	3 cut(s)	49, 332, 334
Kzo9I	GATC	5 cut(s)	58, 235, 555, 619, 793
LmnI	GCTCC	3 cut(s)	33, 243, 354
Lsp1109I	GCAGC	3 cut(s)	411, 453, 498
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	2 cut(s)	77, 372
MaeII	ACGT	4 cut(s)	99, 450, 516, 762
MalI	GATC	5 cut(s)	60, 237, 557, 621, 795
MauBI	CGCGCGCG	1 cut(s)	332
MboI	GATC	5 cut(s)	58, 235, 555, 619, 793
MboII	GAAGA	6 cut(s)	196, 230, 233, 260, 625, 803
MflI	RGATCY	1 cut(s)	793
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	2 cut(s)	95, 263
MluCI	AATT	5 cut(s)	40, 117, 563, 574, 804
MluNI	TGGCCA	2 cut(s)	95, 263
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	94
Mox20I	TGGCCA	2 cut(s)	95, 263
MscI	TGGCCA	2 cut(s)	95, 263
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	2 cut(s)	95, 263
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	4 cut(s)	160, 432, 433, 608
MvaI	CCWGG	2 cut(s)	160, 608
MvnI	CGCG	3 cut(s)	332, 334, 336
MwoI	GCNNNNNNNGC	2 cut(s)	297, 405
NciI	CCSGG	2 cut(s)	432, 433
NcoI	CCATGG	2 cut(s)	18, 239
NdeII	GATC	5 cut(s)	58, 235, 555, 619, 793
NlaIII	CATG	3 cut(s)	22, 243, 589
NlaIV	GGNNCC	3 cut(s)	245, 356, 751
NspI	RCATGY	1 cut(s)	589
PauI	GCGCGC	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	548
PciI	ACATGT	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 315, 536
PfeI	GAWTC	1 cut(s)	327
PkrI	GCNGC	5 cut(s)	401, 404, 407, 443, 513
Ple19I	CGATCG	1 cut(s)	558
PleI	GAGTC	1 cut(s)	130
PmaCI	CACGTG	1 cut(s)	517
PmlI	CACGTG	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	130
Ppu21I	YACGTR	2 cut(s)	451, 517
PpuMI	RGGWCCY	1 cut(s)	73
PscI	ACATGT	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	158, 606
PspCI	CACGTG	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	158, 606
PspN4I	GGNNCC	3 cut(s)	245, 356, 751
PspPI	GGNCC	2 cut(s)	73, 276
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	793
PteI	GCGCGC	1 cut(s)	332
PvuI	CGATCG	1 cut(s)	558
RsaI	GTAC	2 cut(s)	164, 584
RsaNI	GTAC	2 cut(s)	163, 583
RseI	CAYNNNNRTG	1 cut(s)	383
SatI	GCNGC	5 cut(s)	400, 403, 406, 442, 512
Sau3AI	GATC	5 cut(s)	58, 235, 555, 619, 793
Sau96I	GGNCC	2 cut(s)	73, 276
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	4 cut(s)	160, 432, 433, 608
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	2 cut(s)	73, 276
SmaI	CCCGGG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	5 cut(s)	40, 117, 563, 574, 804
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	4 cut(s)	289, 402, 405, 785
SspMI	CTAG	2 cut(s)	77, 372
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	4 cut(s)	158, 430, 431, 606
StyI	CCWWGG	2 cut(s)	18, 239
TaaI	ACNGT	2 cut(s)	89, 494
TaiI	ACGT	4 cut(s)	102, 453, 519, 765
TaqI	TCGA	5 cut(s)	61, 249, 294, 309, 348
TasI	AATT	5 cut(s)	40, 117, 563, 574, 804
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	2 cut(s)	405, 408
TfiI	GAWTC	1 cut(s)	327
TseI	GCWGC	3 cut(s)	399, 441, 511
TspDTI	ATGAA	1 cut(s)	367
TspGWI	ACGGA	1 cut(s)	261
TspMI	CCCGGG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	73, 276
XapI	RAATTY	1 cut(s)	563
XceI	RCATGY	1 cut(s)	589
XmaI	CCCGGG	1 cut(s)	431
XspI	CTAG	2 cut(s)	77, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.