FvH4_6g07650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003061
Physical Location & Seq
Reverse (-)
4603992 .. 4604300
309 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07650.t1

Sequence Viewer

Length: 309 bp
ATGTCTCATGCATTGGTTGATGTGGATTTGGCTAAGGACATTGTGAAATATGTGCCCAAGATTAAGTACTTGTGTTTGAGGAAGGCCAAGATTCGCAAGAGGGAGCTTATTGTGTTGATCAAGGGGTGCAGGGAGCTTGCGGTTTTGGATGTTAGGGACTGTGTGGGTTTTACTGAGCTTGATAGGGAATTAGCAAAGCTTGGTGCTCACATTGCAGAGTTTAGGATGGAGGGTTCGAACCGGTTCATGCCGCGGGAATGGGAGTTTGATGGGGTTATTAATTGGATTAGAGGATATAGTAGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.84

Weight (kDa)

9.1

Isoelectric Point (pI)

19.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 253
AciI CCGC 3 cut(s) 140, 251, 253
AfaI GTAC 1 cut(s) 68
AgeI ACCGGT 1 cut(s) 240
AloI GAACNNNNNNTCC 2 cut(s) 217, 249
AluBI AGCT 4 cut(s) 106, 136, 178, 199
AluI AGCT 4 cut(s) 106, 136, 178, 199
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 84
AseI ATTAAT 1 cut(s) 279
AsiGI ACCGGT 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 242
AsuII TTCGAA 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 208
BccI CCATC 2 cut(s) 220, 263
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
BmcAI AGTACT 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 2 cut(s) 154, 231
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 86
BshTI ACCGGT 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 57, 208
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 3 cut(s) 140, 251, 253
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 33, 174, 306
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 2 cut(s) 154, 231
BstFNI CGCG 1 cut(s) 253
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstSLI GKGCMC 1 cut(s) 57
BstUI CGCG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 2 cut(s) 154, 231
Cac8I GCNNGC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 240
Cfr42I CCGCGG 1 cut(s) 254
Csp6I GTAC 1 cut(s) 67
CspAI ACCGGT 1 cut(s) 240
CviAII CATG 2 cut(s) 8, 247
CviJI RGCY 6 cut(s) 32, 86, 106, 136, 178, 199
CviKI_1 RGCY 6 cut(s) 32, 86, 106, 136, 178, 199
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 3 cut(s) 33, 174, 306
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 13
FaeI CATG 2 cut(s) 11, 250
FaiI YATR 4 cut(s) 9, 51, 248, 297
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 7, 246
FauI CCCGC 1 cut(s) 246
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 2 cut(s) 161, 238
Fsp4HI GCNGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 251
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 241
Hin1II CATG 2 cut(s) 11, 250
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 3 cut(s) 11, 129, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 3 cut(s) 33, 174, 306
Hsp92II CATG 2 cut(s) 11, 250
Ksp22I TGATCA 1 cut(s) 117
KspI CCGCGG 1 cut(s) 254
Kzo9I GATC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 103, 133
LpnPI CCDG 2 cut(s) 115, 254
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MhlI GDGCHC 2 cut(s) 57, 208
MluCI AATT 2 cut(s) 188, 280
MnlI CCTC 4 cut(s) 72, 93, 223, 284
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 2 cut(s) 63, 279
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 1 cut(s) 117
NlaIII CATG 2 cut(s) 11, 250
NsiI ATGCAT 1 cut(s) 13
NspV TTCGAA 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 91
PinAI ACCGGT 1 cut(s) 240
PkrI GCNGC 1 cut(s) 252
PshBI ATTAAT 1 cut(s) 279
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SacII CCGCGG 1 cut(s) 254
SaqAI TTAA 2 cut(s) 63, 279
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 68
SduI GDGCHC 2 cut(s) 57, 208
SetI ASST 4 cut(s) 108, 138, 180, 201
Sfr303I CCGCGG 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 236
SgrBI CCGCGG 1 cut(s) 254
Sse9I AATT 2 cut(s) 188, 280
SsiI CCGC 3 cut(s) 140, 251, 253
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 188, 280
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 63, 279
Tru9I TTAA 2 cut(s) 63, 279
TspDTI ATGAA 1 cut(s) 235
VspI ATTAAT 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 242
ZrmI AGTACT 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.