RLG00000027589

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003061
Physical Location & Seq
Forward (+)
12967460 .. 12968162
703 bp
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UTR
Exon/CDS
Intron
RLM00000027589

Sequence Viewer

Length: 528 bp
ATGCTCTTGTTCATCCCTTTTGTCTGCAAATCGTGGTACAGAACAAGCCTCAGTCCTGCATGTTGGAAACGCCTCATCTTCCCAGACATCGAGAAAGGAACGATTGATCCTTGGAGCTTAGAAATTGGCCCTAATGACCCTTGGAATTATCATAATGAAACTGAGAGTTGTAGTTTTGAGTACTTTATAAGAAGGAAGTTTTGCGGGTTGCATCTGTCTGATGTGTCCATCAATGAAGATGAGGCAACTGCAATTGTAAAATTTGTGCCTAATGTTAAGTACTTGTGCTTGAGGAAGTCACGCATCAGTAAGAATAATCTGGTGAAAATACTGATAGGCTGCAAAGACCTTGAGCTTTTGGATGTGAGGGAGTGTAGTGGTTTTGATGAGGGTGATGAGGAAATATTGGAGCTTGCATCTCACATTCCTAAATTCATGTATGCTGGTTCTAAACACCACTACGTCTTTGAGATTGATCCCCTAATTAAGATTTATGGGGAGGAAGACGAAGATGAAGAGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

176

Amino Acids

20.39

Weight (kDa)

4.88

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AciI CCGC 1 cut(s) 204
AclWI GGATC 2 cut(s) 101, 470
AcsI RAATTY 2 cut(s) 260, 431
AfaI GTAC 3 cut(s) 38, 182, 281
AloI GAACNNNNNNTCC 2 cut(s) 91, 123
AluBI AGCT 3 cut(s) 117, 355, 412
AluI AGCT 3 cut(s) 117, 355, 412
AlwI GGATC 2 cut(s) 101, 470
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 339
ApoI RAATTY 2 cut(s) 260, 431
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 334, 404
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 236
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
BmcAI AGTACT 2 cut(s) 182, 281
BmgT120I GGNCC 1 cut(s) 128
BmsI GCATC 3 cut(s) 220, 312, 425
BpiI GAAGAC 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 310, 371
BsaJI CCNNGG 2 cut(s) 110, 140
BseDI CCNNGG 2 cut(s) 110, 140
BseGI GGATG 2 cut(s) 12, 367
BseMII CTCAG 2 cut(s) 64, 153
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 1 cut(s) 129
BsnI GGCC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 106, 475
BspACI CCGC 1 cut(s) 204
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 2 cut(s) 63, 154
BspPI GGATC 2 cut(s) 101, 470
BssECI CCNNGG 2 cut(s) 110, 140
BssMI GATC 2 cut(s) 106, 475
BssT1I CCWWGG 2 cut(s) 110, 140
Bst6I CTCTTC 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 3 cut(s) 50, 118, 162
BstF5I GGATG 2 cut(s) 12, 367
BstKTI GATC 2 cut(s) 109, 478
BstMBI GATC 2 cut(s) 106, 475
BstNSI RCATGY 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 510
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 2 cut(s) 12, 367
Cac8I GCNNGC 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 3 cut(s) 37, 181, 280
CviAII CATG 2 cut(s) 60, 436
CviJI RGCY 7 cut(s) 48, 117, 129, 339, 355, 412, 521
CviKI_1 RGCY 7 cut(s) 48, 117, 129, 339, 355, 412, 521
CviQI GTAC 3 cut(s) 37, 181, 280
DdeI CTNAG 3 cut(s) 50, 118, 162
DpnI GATC 2 cut(s) 108, 477
DpnII GATC 2 cut(s) 106, 475
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 110, 140
EcoT14I CCWWGG 2 cut(s) 110, 140
ErhI CCWWGG 2 cut(s) 110, 140
FaeI CATG 2 cut(s) 63, 439
FaiI YATR 6 cut(s) 61, 153, 188, 437, 441, 495
FatI CATG 2 cut(s) 59, 435
FauI CCCGC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 340
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 1 cut(s) 129
Hin1II CATG 2 cut(s) 63, 439
HphI GGTGA 2 cut(s) 334, 404
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 6 cut(s) 27, 59, 211, 251, 342, 416
HpyF3I CTNAG 3 cut(s) 50, 118, 162
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 2 cut(s) 63, 439
Kzo9I GATC 2 cut(s) 106, 475
LmnI GCTCC 2 cut(s) 114, 409
LpnPI CCDG 4 cut(s) 69, 96, 305, 429
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 3 cut(s) 220, 312, 425
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 297
MalI GATC 2 cut(s) 108, 477
MboI GATC 2 cut(s) 106, 475
MboII GAAGA 5 cut(s) 70, 248, 515, 521, 527
MfeI CAATTG 1 cut(s) 252
MluCI AATT 6 cut(s) 123, 145, 252, 260, 431, 483
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 9 cut(s) 59, 83, 235, 285, 360, 382, 391, 493, 511
MseI TTAA 2 cut(s) 276, 486
MunI CAATTG 1 cut(s) 252
NdeII GATC 2 cut(s) 106, 475
NlaIII CATG 2 cut(s) 63, 439
NmuCI GTSAC 1 cut(s) 297
NspI RCATGY 1 cut(s) 63
PkrI GCNGC 1 cut(s) 341
PsiI TTATAA 1 cut(s) 188
PspPI GGNCC 1 cut(s) 128
RsaI GTAC 3 cut(s) 38, 182, 281
RsaNI GTAC 3 cut(s) 37, 181, 280
SaqAI TTAA 2 cut(s) 276, 486
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 2 cut(s) 106, 475
Sau96I GGNCC 1 cut(s) 128
ScaI AGTACT 2 cut(s) 182, 281
SetI ASST 5 cut(s) 119, 351, 357, 414, 465
SfaNI GCATC 3 cut(s) 220, 312, 425
SmlI CTYRAG 2 cut(s) 289, 350
SmoI CTYRAG 2 cut(s) 289, 350
Sse9I AATT 6 cut(s) 123, 145, 252, 260, 431, 483
SsiI CCGC 1 cut(s) 204
SspI AATATT 1 cut(s) 405
StyI CCWWGG 2 cut(s) 110, 140
TaiI ACGT 1 cut(s) 465
TaqI TCGA 1 cut(s) 90
TasI AATT 6 cut(s) 123, 145, 252, 260, 431, 483
TatI WGTACW 2 cut(s) 180, 279
Tru1I TTAA 2 cut(s) 276, 486
Tru9I TTAA 2 cut(s) 276, 486
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 1 cut(s) 339
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 4 cut(s) 171, 249, 424, 528
XapI RAATTY 2 cut(s) 260, 431
XceI RCATGY 1 cut(s) 63
ZrmI AGTACT 2 cut(s) 182, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.