Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

283040 .. 284249

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTGGAATGAAATGAGTGTGGAAATAGTTGAAGAAATTTTGAGCCAACGTTTGGCCAACGTCTTTGTCAAAGTTGGAATTGAGTCTCTGCTCTTGTTCGTCCCCTTCGTCTGTAAGTTCTGGTACAGAGCGAGCCAGAACCCCGTGTGCTGGGAAAGCCTTGTCTTCCCAGACAGCGAAGAAGAAGCTACAAACGATCCATGGAGCCTCGACGACTATGCCGCCAATCTTCCATCGACCTACGCCAATCGCATCGAAGGCCAGTCCTTCAATTACTTCACGAGGAGATTCGTGCGCGAGTTTGAAATCGACTACAACAGTTTCTCAATCCGTAGCTTCATCAAAATGGTCATCAATCACAGCTGTAGCAACACTAAGTTTTTGAAAATCCCCGAGATTTGCAGCTACTATGTGAACGTCATTGAAAAAATACTGGAGCGAGATAGTCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

152

Amino Acids

17.84

Weight (kDa)

4.75

Isoelectric Point (pI)

66.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	52
AccII	CGCG	1 cut(s)	297
AciI	CCGC	1 cut(s)	222
AclI	AACGTT	1 cut(s)	49
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	52, 150
AgsI	TTSAA	5 cut(s)	32, 271, 305, 385, 425
AluBI	AGCT	4 cut(s)	188, 336, 363, 405
AluI	AGCT	4 cut(s)	188, 336, 363, 405
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	54, 259
ApeKI	GCWGC	1 cut(s)	402
ApoI	RAATTY	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	297
AvaI	CYCGRG	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	56
BauI	CACGAG	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BcoDI	GTCTC	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	2 cut(s)	222, 403
BlsI	GCNGC	2 cut(s)	223, 404
BmeT110I	CYCGRG	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	206
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 150
Bse1I	ACTGG	2 cut(s)	262, 438
BseDI	CCNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	52, 150
BseNI	ACTGG	2 cut(s)	262, 438
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	414
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	56, 261
BsiHKCI	CYCGRG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	52, 150
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	56, 261
BsoBI	CYCGRG	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	2 cut(s)	56, 261
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	262, 438
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	375
BstDSI	CCRYGG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 258
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	56, 261
BtgI	CCRYGG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	201
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	1 cut(s)	204
FaiI	YATR	3 cut(s)	202, 219, 411
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	222, 403
Fsp4HI	GCNGC	2 cut(s)	222, 403
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	2 cut(s)	222, 403
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	56, 261
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	83, 288
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	115, 251, 277
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	3 cut(s)	49, 60, 417
HpyCH4V	TGCA	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 258
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	3 cut(s)	49, 60, 417
Hsp92II	CATG	1 cut(s)	204
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	2 cut(s)	204, 436
LpnPI	CCDG	6 cut(s)	106, 136, 149, 183, 275, 419
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	1 cut(s)	261
MaeII	ACGT	3 cut(s)	49, 60, 417
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	5 cut(s)	44, 157, 191, 194, 221
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	3 cut(s)	36, 78, 271
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	218, 276
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	156, 258
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	204
NlaIV	GGNNCC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	223, 404
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp1406I	AACGTT	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	363
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	344
SatI	GCNGC	2 cut(s)	222, 403
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	92
SetI	ASST	8 cut(s)	52, 63, 190, 242, 338, 365, 407, 420
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	36, 78, 271
SsiI	CCGC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	3 cut(s)	52, 63, 420
TaqI	TCGA	4 cut(s)	210, 236, 255, 309
TasI	AATT	3 cut(s)	36, 78, 271
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	288
TseI	GCWGC	1 cut(s)	402
TspDTI	ATGAA	2 cut(s)	24, 328
TspGWI	ACGGA	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.