Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Forward (+)

13708337 .. 13709137

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATTGGCTTCAGAGTCCCAAACGCAAGCGCCAGACCGATCGAAGGTGGGAGGATTTGAACACGGACTGTTTGGTGAATGTGTTTGAGAAAGTAGGGATGGAGTCTATGCTCTTGTTCATCCCTTTTGTCTGCAAATCGTGGTACAGAACAAGCCTCAGTCCTGCATGCTGGAAACGCCTCATCTTCCCAGACACCGAGAAAGGAACGATTGATCCTTGGAGCTTAGAAATTGACACTAATGACCCTTGGAATTATCATAATGAAACTGAGAGTTCTCGTTTGGAGTACTTTATAAGAAGGTTTGCCCGTGAATTTGAACTTGATTGGAGCCTTTTCTCGGTCCCTAAATTTATCGAATATGTTATTAATCGTAGCAACGGAGAAACGCAATTTCTCAAGCTACCTGGAATTTGCAGTAGCTATAGCTTTGCTATAAGTGAAATTCTGAAACACATCAACAAGAAGTGCAGGAAGTTTTGCGGGTTGCATCTGTGTGATGCGTCCATCAATGAAGATGAGGCAGCTGCAATTGTAAAATTTGTGCCTAATGTTAAGTACTTGTGCTTGAGGAAGTCACTCATCAGTAGGAATAATCTGGTGAAAATACTGAAAGGCTGCAAAGACCTTGAGCTTTTGGATGTGAGGGAGTGTAGTGGTTTTGATGAGGGTGATGAGGAAATATTGGAGCATGCATCTCACATTCCTAAATTCATGTATGCTGGTTCTAAACACCACTACGTCTTTGAGATTGATCCCCTAATTGAGATTTATGGGGAGGATGACGAAGACGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

266

Amino Acids

31.3

Weight (kDa)

5.25

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	2 cut(s)	209, 749
AcsI	RAATTY	6 cut(s)	314, 350, 411, 444, 539, 710
AfaI	GTAC	3 cut(s)	146, 290, 560
AfiI	CCNNNNNNNGG	2 cut(s)	45, 340
AgsI	TTSAA	2 cut(s)	61, 320
AjnI	CCWGG	1 cut(s)	406
AloI	GAACNNNNNNTCC	2 cut(s)	199, 231
AluBI	AGCT	6 cut(s)	225, 403, 423, 429, 527, 634
AluI	AGCT	6 cut(s)	225, 403, 423, 429, 527, 634
AlwI	GGATC	2 cut(s)	209, 749
ApeKI	GCWGC	3 cut(s)	524, 527, 618
ApoI	RAATTY	6 cut(s)	314, 350, 411, 444, 539, 710
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	3 cut(s)	88, 613, 683
AvaII	GGWCC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	795
BbvI	GCAGC	3 cut(s)	514, 536, 605
BccI	CCATC	2 cut(s)	94, 515
BciT130I	CCWGG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	424
BfoI	RGCGCY	1 cut(s)	34
BisI	GCNGC	3 cut(s)	525, 528, 619
BlsI	GCNGC	3 cut(s)	526, 529, 620
BmcAI	AGTACT	2 cut(s)	290, 560
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	332, 345
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	3 cut(s)	490, 499, 704
BpiI	GAAGAC	1 cut(s)	795
BpuEI	CTTGAG	3 cut(s)	383, 589, 650
BsaJI	CCNNGG	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 340
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	218, 248
BseGI	GGATG	4 cut(s)	105, 120, 646, 787
BseLI	CCNNNNNNNGG	2 cut(s)	45, 340
BseMII	CTCAG	2 cut(s)	172, 261
BseXI	GCAGC	3 cut(s)	514, 536, 605
BsgI	GTGCAG	1 cut(s)	490
Bsh1285I	CGRYCG	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	43
BslFI	GGGAC	2 cut(s)	3, 329
BslI	CCNNNNNNNGG	2 cut(s)	45, 340
BsmFI	GGGAC	2 cut(s)	3, 329
Bsp143I	GATC	3 cut(s)	40, 214, 754
BspACI	CCGC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	171, 262
BspLI	GGNNCC	2 cut(s)	332, 345
BspPI	GGATC	2 cut(s)	209, 749
BssECI	CCNNGG	2 cut(s)	218, 248
BssMI	GATC	3 cut(s)	40, 214, 754
BssT1I	CCWWGG	2 cut(s)	218, 248
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	789
BstC8I	GCNNGC	3 cut(s)	29, 169, 693
BstDEI	CTNAG	3 cut(s)	158, 226, 270
BstF5I	GGATG	4 cut(s)	105, 120, 646, 787
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	3 cut(s)	43, 217, 757
BstMBI	GATC	3 cut(s)	40, 214, 754
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	2 cut(s)	171, 695
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	3 cut(s)	514, 536, 605
BstV2I	GAAGAC	1 cut(s)	795
BtsCI	GGATG	4 cut(s)	105, 120, 646, 787
Cac8I	GCNNGC	3 cut(s)	29, 169, 693
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	343
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	3 cut(s)	145, 289, 559
CviAII	CATG	3 cut(s)	168, 692, 715
CviQI	GTAC	3 cut(s)	145, 289, 559
DdeI	CTNAG	3 cut(s)	158, 226, 270
DpnI	GATC	3 cut(s)	42, 216, 756
DpnII	GATC	3 cut(s)	40, 214, 754
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
Eco130I	CCWWGG	2 cut(s)	218, 248
Eco47I	GGWCC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	218, 248
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	2 cut(s)	218, 248
FaeI	CATG	3 cut(s)	171, 695, 718
FaqI	GGGAC	2 cut(s)	3, 329
FatI	CATG	3 cut(s)	167, 691, 714
FauI	CCCGC	1 cut(s)	476
Fnu4HI	GCNGC	3 cut(s)	525, 528, 619
FokI	GGATG	4 cut(s)	107, 112, 653, 794
Fsp4HI	GCNGC	3 cut(s)	525, 528, 619
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	3 cut(s)	525, 528, 619
HaeII	RGCGCY	1 cut(s)	34
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	171, 695, 718
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	2 cut(s)	16, 104
HphI	GGTGA	3 cut(s)	88, 613, 683
Hpy188I	TCNGA	2 cut(s)	15, 450
HpyAV	CCTTC	2 cut(s)	39, 294
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	8 cut(s)	135, 167, 417, 471, 490, 530, 621, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	3 cut(s)	158, 226, 270
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	3 cut(s)	171, 695, 718
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	40, 214, 754
LmnI	GCTCC	3 cut(s)	222, 330, 688
LpnPI	CCDG	9 cut(s)	47, 157, 177, 204, 393, 420, 457, 584, 708
Lsp1109I	GCAGC	3 cut(s)	514, 536, 605
LweI	GCATC	3 cut(s)	490, 499, 704
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	576
MalI	GATC	3 cut(s)	42, 216, 756
MboI	GATC	3 cut(s)	40, 214, 754
MboII	GAAGA	3 cut(s)	178, 527, 800
MfeI	CAATTG	1 cut(s)	531
MlyI	GAGTC	2 cut(s)	25, 113
MnlI	CCTC	9 cut(s)	46, 167, 191, 514, 564, 639, 661, 670, 772
Mph1103I	ATGCAT	1 cut(s)	697
MseI	TTAA	2 cut(s)	369, 555
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeII	GATC	3 cut(s)	40, 214, 754
NlaIII	CATG	3 cut(s)	171, 695, 718
NlaIV	GGNNCC	2 cut(s)	332, 345
NmuCI	GTSAC	1 cut(s)	576
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	2 cut(s)	171, 695
PaeI	GCATGC	2 cut(s)	171, 695
PkrI	GCNGC	3 cut(s)	526, 529, 620
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	2 cut(s)	24, 112
PpsI	GAGTC	2 cut(s)	24, 112
PshBI	ATTAAT	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	332, 345
PspPI	GGNCC	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	3 cut(s)	146, 290, 560
RsaNI	GTAC	3 cut(s)	145, 289, 559
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	369, 555
SatI	GCNGC	3 cut(s)	525, 528, 619
Sau3AI	GATC	3 cut(s)	40, 214, 754
Sau96I	GGNCC	1 cut(s)	343
ScaI	AGTACT	2 cut(s)	290, 560
SchI	GAGTC	2 cut(s)	25, 113
ScrFI	CCNGG	1 cut(s)	408
SfaNI	GCATC	3 cut(s)	490, 499, 704
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	3 cut(s)	398, 568, 629
SmoI	CTYRAG	3 cut(s)	398, 568, 629
SphI	GCATGC	2 cut(s)	171, 695
SsiI	CCGC	1 cut(s)	483
SspI	AATATT	1 cut(s)	684
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	2 cut(s)	218, 248
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	2 cut(s)	43, 357
TaqII	GACCGA	2 cut(s)	53, 331
TatI	WGTACW	2 cut(s)	288, 558
Tru1I	TTAA	2 cut(s)	369, 555
Tru9I	TTAA	2 cut(s)	369, 555
TseFI	GTSAC	1 cut(s)	576
TseI	GCWGC	3 cut(s)	524, 527, 618
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	4 cut(s)	109, 279, 528, 703
TspGWI	ACGGA	2 cut(s)	80, 396
VpaK11BI	GGWCC	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	6 cut(s)	314, 350, 411, 444, 539, 710
XceI	RCATGY	2 cut(s)	171, 695
ZrmI	AGTACT	2 cut(s)	290, 560
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.