Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Forward (+)

42055793 .. 42058704

Gene Structure 2912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGTGAAGGAGATGAAGTTTGAGTCCTCATCATCAAACCCATTTTCATCACCATCATCGTTCCTCAAACGTAATCATGTCTTTCTGAAGTTTGCAGTTTGTTTCCTCTTAGTGGGTTTGGCTTTTCGCTTCTCTGATTCGATTCGATTAATCTCAGTACTACAGCCATTGCCACCTTCAATTGAAACAGAGCAAGAACCAGAGGAAACAGAGTCCCCTGTTTCTTCTTTCCTTGCTCAAACGCCTAGTTCTTCTCCAACTATTGATTTTCCTGCAACTAATATCACCCAAAATTCTGAGAATGTAAAATGTGACATTTTCACTGGAGAATGGGTACCAGACCCATCAGGGCCAAGATACACCAACGAGAGCTGCCCTGTGATTGAGTCTCATCAGAATTGTATGAAGAATGGTCGCCCCGATTCGGCCTACTTTTACTGGAGGTGGAATCCAAGAGACTGTGAGCTTCCCAAATTCAATGCACAGAGATTTCTTGCTCTTATGAGGAACAAGTCATGGGCATTTATCGGGGATTCAATTTCTCGTAACCATGTCCAGTCATTGCTTTGCCTTCTCTCCCAGGTGGAACAAGCTGTTGAGGTATACCATGACAAAGAATACAGGTCTAAGAGATGGCTCTTCCCTTCTCACAACTTCACACTTTCGGTCATCTGGACTCCTTTCCTTGTCAAAGCAGCTACTTTTGAAGACATGAATGGAGTTTCCACTTCAGAGATCCAGCTTTATCTTGACAAACTCGATAAGACATGGACTGATCAATACAACAGCTTGGATTACCTGGTCATTTCCGGTGGGAAATGGTTCCTTAAAACTGCGATATACTATGAAAACGACACGGTCAGTGGCTGCCATTACTGCCCCGGAAAGAACTTAACTGAGCTAGGATTTGAACACGCCTATCACAATGCTCTCCGCCTGGTTTTCAACTTCATCAAAGGCTCGGATCATAAAGCATCTGTATTATTCAGAACCACGACGCCTGACCACTTTGAGAATGGAGAATGGTTTAGTGGAGGGTATTGCAACAGAACAGTGCCATTCAAAGAAGGTGAGGTTGACATGAAAGATGCAGACACCGTAATGCGTAACATTGAGTTGGAAGAATTCGAGAAGGCTTCGGACAAAGGAGCTGAAGAGGGAGAGCGTTTAAAGCTATTGGATACAACACACCTTTCATTGTTGAGACCCGATGGGCATCCAGGTCCTTACAGGCAGTTCCAGCCATTTGCAAAGGACCAAAATGCCAAAGTTCAGACTGACTGCCTACATTGGTGCTTGCCTGGGCCTATAGACTCCTGGAATGATTTGGTGATGGAAATGTTGATTAACGGCGAAAAATATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

455

Amino Acids

52.23

Weight (kDa)

5.46

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	103 - 155	4.6e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	156 - 447	2.5e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	1 cut(s)	934
AclWI	GGATC	2 cut(s)	730, 972
AcsI	RAATTY	3 cut(s)	292, 473, 1124
AcuI	CTGAAG	3 cut(s)	107, 714, 1173
AcyI	GRCGYC	1 cut(s)	998
AfaI	GTAC	2 cut(s)	159, 336
AfiI	CCNNNNNNNGG	2 cut(s)	112, 424
AgsI	TTSAA	8 cut(s)	180, 185, 478, 537, 707, 911, 946, 1063
AjnI	CCWGG	6 cut(s)	579, 798, 936, 1219, 1300, 1316
AluBI	AGCT	9 cut(s)	372, 466, 593, 698, 742, 789, 901, 1151, 1174
AluI	AGCT	9 cut(s)	372, 466, 593, 698, 742, 789, 901, 1151, 1174
Alw26I	GTCTC	3 cut(s)	393, 450, 1198
AlwI	GGATC	2 cut(s)	730, 972
AlwNI	CAGNNNCTG	1 cut(s)	867
AoxI	GGCC	3 cut(s)	350, 426, 1304
ApeKI	GCWGC	3 cut(s)	372, 695, 867
ApoI	RAATTY	3 cut(s)	292, 473, 1124
AseI	ATTAAT	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	821
Asp718I	GGTACC	1 cut(s)	334
AspS9I	GGNCC	4 cut(s)	350, 1223, 1255, 1304
AsuC2I	CCSGG	1 cut(s)	882
AsuHPI	GGTGA	5 cut(s)	16, 42, 277, 1082, 1342
AvaII	GGWCC	2 cut(s)	1223, 1255
BanI	GGYRCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	3 cut(s)	359, 707, 854
BccI	CCATC	5 cut(s)	61, 352, 627, 1205, 1327
BceAI	ACGGC	1 cut(s)	1366
BciT130I	CCWGG	6 cut(s)	581, 800, 938, 1221, 1302, 1318
BciVI	GTATCC	1 cut(s)	1174
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	882
BcoDI	GTCTC	3 cut(s)	393, 450, 1198
BfaI	CTAG	2 cut(s)	246, 902
BfmI	CTRYAG	2 cut(s)	161, 1308
BfuI	GTATCC	1 cut(s)	1174
BisI	GCNGC	3 cut(s)	373, 696, 868
BlsI	GCNGC	3 cut(s)	374, 697, 869
BmcAI	AGTACT	1 cut(s)	159
Bme1390I	CCNGG	7 cut(s)	581, 800, 882, 938, 1221, 1302, 1318
Bme18I	GGWCC	2 cut(s)	1223, 1255
BmgT120I	GGNCC	4 cut(s)	350, 1223, 1255, 1304
BmiI	GGNNCC	2 cut(s)	336, 824
BmrFI	CCNGG	7 cut(s)	581, 800, 882, 938, 1221, 1302, 1318
BmsI	GCATC	3 cut(s)	983, 1078, 1225
BpiI	GAAGAC	1 cut(s)	714
BpmI	CTGGAG	2 cut(s)	345, 460
BpuMI	CCSGG	1 cut(s)	882
BsaBI	GATNNNNATC	1 cut(s)	1215
BsaHI	GRCGYC	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	1198
BsaJI	CCNNGG	3 cut(s)	579, 880, 1301
BsaWI	WCCGGW	1 cut(s)	809
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 318, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 424
Bse1I	ACTGG	3 cut(s)	328, 443, 556
Bse3DI	GCAATG	2 cut(s)	167, 560
Bse8I	GATNNNNATC	1 cut(s)	1215
BseBI	CCWGG	6 cut(s)	581, 800, 938, 1221, 1302, 1318
BseDI	CCNNGG	3 cut(s)	579, 880, 1301
BseGI	GGATG	1 cut(s)	1216
BseJI	GATNNNNATC	1 cut(s)	1215
BseLI	CCNNNNNNNGG	2 cut(s)	112, 424
BseMI	GCAATG	2 cut(s)	167, 560
BseMII	CTCAG	3 cut(s)	168, 288, 888
BseNI	ACTGG	3 cut(s)	328, 443, 556
BseXI	GCAGC	3 cut(s)	359, 707, 854
BshFI	GGCC	3 cut(s)	352, 428, 1306
BshNI	GGYRCC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	810, 882
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	112, 424
BsmAI	GTCTC	3 cut(s)	393, 450, 1198
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	352, 428, 1306
Bso31I	GGTCTC	1 cut(s)	1198
Bsp143I	GATC	3 cut(s)	735, 775, 964
BspACI	CCGC	1 cut(s)	934
BspANI	GGCC	3 cut(s)	352, 428, 1306
BspCNI	CTCAG	3 cut(s)	167, 289, 889
BspLI	GGNNCC	2 cut(s)	336, 824
BspPI	GGATC	2 cut(s)	730, 972
BspQI	GCTCTTC	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	1198
BsrDI	GCAATG	2 cut(s)	167, 560
BsrI	ACTGG	3 cut(s)	328, 443, 556
BssECI	CCNNGG	3 cut(s)	579, 880, 1301
BssMI	GATC	3 cut(s)	735, 775, 964
BssNAI	GTATAC	1 cut(s)	604
BssNI	GRCGYC	1 cut(s)	998
Bst1107I	GTATAC	1 cut(s)	604
Bst2UI	CCWGG	6 cut(s)	581, 800, 938, 1221, 1302, 1318
Bst4CI	ACNGT	4 cut(s)	461, 859, 1054, 1099
Bst6I	CTCTTC	2 cut(s)	644, 1149
BstACI	GRCGYC	1 cut(s)	998
BstC8I	GCNNGC	1 cut(s)	1298
BstDEI	CTNAG	5 cut(s)	109, 154, 297, 627, 897
BstF5I	GGATG	1 cut(s)	1216
BstKTI	GATC	3 cut(s)	738, 778, 967
BstMAI	GTCTC	3 cut(s)	393, 450, 1198
BstMBI	GATC	3 cut(s)	735, 775, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	876, 1171, 1240
BstNI	CCWGG	6 cut(s)	581, 800, 938, 1221, 1302, 1318
BstSCI	CCNGG	7 cut(s)	579, 798, 880, 936, 1219, 1300, 1316
BstSFI	CTRYAG	2 cut(s)	161, 1308
BstV1I	GCAGC	3 cut(s)	359, 707, 854
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	735
BstZ17I	GTATAC	1 cut(s)	604
BsuI	GTATCC	1 cut(s)	1174
BsuRI	GGCC	3 cut(s)	352, 428, 1306
BtsCI	GGATG	1 cut(s)	1216
BtsIMutI	CAGTG	3 cut(s)	321, 868, 1059
Cac8I	GCNNGC	1 cut(s)	1298
CaiI	CAGNNNCTG	1 cut(s)	867
Cfr13I	GGNCC	4 cut(s)	350, 1223, 1255, 1304
CseI	GACGC	1 cut(s)	1006
CsiI	ACCWGGT	1 cut(s)	798
Csp6I	GTAC	2 cut(s)	158, 335
CviAII	CATG	7 cut(s)	77, 516, 551, 608, 712, 768, 1081
CviQI	GTAC	2 cut(s)	158, 335
DdeI	CTNAG	5 cut(s)	109, 154, 297, 627, 897
DpnI	GATC	3 cut(s)	737, 777, 966
DpnII	GATC	3 cut(s)	735, 775, 964
DraI	TTTAAA	1 cut(s)	1170
Eam1104I	CTCTTC	2 cut(s)	644, 1149
EarI	CTCTTC	2 cut(s)	644, 1149
EciI	GGCGGA	1 cut(s)	923
Eco31I	GGTCTC	1 cut(s)	1198
Eco47I	GGWCC	2 cut(s)	1223, 1255
Eco57I	CTGAAG	3 cut(s)	107, 714, 1173
EcoO109I	RGGNCCY	1 cut(s)	1223
EcoRI	GAATTC	1 cut(s)	1124
EcoRII	CCWGG	6 cut(s)	579, 798, 936, 1219, 1300, 1316
FaeI	CATG	7 cut(s)	80, 519, 554, 611, 715, 771, 1084
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	7 cut(s)	76, 515, 550, 607, 711, 767, 1080
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	3 cut(s)	373, 696, 868
FokI	GGATG	1 cut(s)	1203
Fsp4HI	GCNGC	3 cut(s)	373, 696, 868
FspBI	CTAG	2 cut(s)	246, 902
GluI	GCNGC	3 cut(s)	373, 696, 868
GsuI	CTGGAG	2 cut(s)	345, 460
HaeIII	GGCC	3 cut(s)	352, 428, 1306
HapII	CCGG	2 cut(s)	810, 882
HgaI	GACGC	1 cut(s)	1006
Hin1I	GRCGYC	1 cut(s)	998
Hin1II	CATG	7 cut(s)	80, 519, 554, 611, 715, 771, 1084
HincII	GTYRAC	1 cut(s)	1078
HindII	GTYRAC	1 cut(s)	1078
HpaII	CCGG	2 cut(s)	810, 882
HphI	GGTGA	5 cut(s)	16, 42, 277, 1082, 1342
Hpy166II	GTNNAC	2 cut(s)	604, 1078
Hpy188I	TCNGA	9 cut(s)	87, 136, 298, 396, 733, 964, 989, 1141, 1275
Hpy188III	TCNNGA	3 cut(s)	673, 749, 1129
Hpy8I	GTNNAC	2 cut(s)	604, 1078
Hpy99I	CGWCG	1 cut(s)	1000
HpyAV	CCTTC	5 cut(s)	186, 581, 654, 1061, 1126
HpyCH4III	ACNGT	4 cut(s)	461, 859, 1054, 1099
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	6 cut(s)	95, 275, 482, 1044, 1091, 1250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	876, 1171, 1240
HpyF3I	CTNAG	5 cut(s)	109, 154, 297, 627, 897
HpySE526I	ACGT	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	998
Hsp92II	CATG	7 cut(s)	80, 519, 554, 611, 715, 771, 1084
KpnI	GGTACC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	3 cut(s)	735, 775, 964
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	1 cut(s)	1148
Lsp1109I	GCAGC	3 cut(s)	359, 707, 854
LweI	GCATC	3 cut(s)	983, 1078, 1225
MabI	ACCWGGT	1 cut(s)	798
MaeI	CTAG	2 cut(s)	246, 902
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	3 cut(s)	311, 545, 1106
MalI	GATC	3 cut(s)	737, 777, 966
MboI	GATC	3 cut(s)	735, 775, 964
MboII	GAAGA	7 cut(s)	216, 243, 418, 631, 719, 1133, 1166
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	735
MluCI	AATT	6 cut(s)	180, 292, 397, 473, 537, 1124
MlyI	GAGTC	5 cut(s)	32, 221, 395, 670, 1307
MmeI	TCCRAC	2 cut(s)	281, 1098
MroXI	GAANNNNTTC	1 cut(s)	821
MseI	TTAA	5 cut(s)	149, 828, 893, 1169, 1347
MslI	CAYNNNNRTG	1 cut(s)	1100
MspI	CCGG	2 cut(s)	810, 882
MspR9I	CCNGG	7 cut(s)	581, 800, 882, 938, 1221, 1302, 1318
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	6 cut(s)	581, 800, 938, 1221, 1302, 1318
MwoI	GCNNNNNNNGC	3 cut(s)	876, 1171, 1240
NciI	CCSGG	1 cut(s)	882
NdeII	GATC	3 cut(s)	735, 775, 964
NlaIII	CATG	7 cut(s)	80, 519, 554, 611, 715, 771, 1084
NlaIV	GGNNCC	2 cut(s)	336, 824
NmuCI	GTSAC	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	5 cut(s)	137, 142, 422, 448, 533
PflFI	GACNNNGTC	1 cut(s)	857
PfoI	TCCNGGA	1 cut(s)	1316
PkrI	GCNGC	3 cut(s)	374, 697, 869
PleI	GAGTC	5 cut(s)	31, 220, 394, 670, 1307
PpsI	GAGTC	5 cut(s)	31, 220, 394, 670, 1307
PpuMI	RGGWCCY	1 cut(s)	1223
PshBI	ATTAAT	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	1223
Psp6I	CCWGG	6 cut(s)	579, 798, 936, 1219, 1300, 1316
PspGI	CCWGG	6 cut(s)	579, 798, 936, 1219, 1300, 1316
PspN4I	GGNNCC	2 cut(s)	336, 824
PspPI	GGNCC	4 cut(s)	350, 1223, 1255, 1304
PspPPI	RGGWCCY	1 cut(s)	1223
PstNI	CAGNNNCTG	1 cut(s)	867
PsuI	RGATCY	1 cut(s)	735
PsyI	GACNNNGTC	1 cut(s)	857
RsaI	GTAC	2 cut(s)	159, 336
RsaNI	GTAC	2 cut(s)	158, 335
RseI	CAYNNNNRTG	1 cut(s)	1100
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	5 cut(s)	149, 828, 893, 1169, 1347
SatI	GCNGC	3 cut(s)	373, 696, 868
Sau3AI	GATC	3 cut(s)	735, 775, 964
Sau96I	GGNCC	4 cut(s)	350, 1223, 1255, 1304
ScaI	AGTACT	1 cut(s)	159
SchI	GAGTC	5 cut(s)	32, 221, 395, 670, 1307
ScrFI	CCNGG	7 cut(s)	581, 800, 882, 938, 1221, 1302, 1318
SexAI	ACCWGGT	1 cut(s)	798
SfaNI	GCATC	3 cut(s)	983, 1078, 1225
SfcI	CTRYAG	2 cut(s)	161, 1308
SinI	GGWCC	2 cut(s)	1223, 1255
SmiMI	CAYNNNNRTG	1 cut(s)	1100
Sse9I	AATT	6 cut(s)	180, 292, 397, 473, 537, 1124
SsiI	CCGC	1 cut(s)	934
SspMI	CTAG	2 cut(s)	246, 902
StyD4I	CCNGG	7 cut(s)	579, 798, 880, 936, 1219, 1300, 1316
TaaI	ACNGT	4 cut(s)	461, 859, 1054, 1099
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	4 cut(s)	140, 145, 759, 1128
TaqII	GACCGA	1 cut(s)	655
TasI	AATT	6 cut(s)	180, 292, 397, 473, 537, 1124
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	5 cut(s)	137, 142, 422, 448, 533
Tru1I	TTAA	5 cut(s)	149, 828, 893, 1169, 1347
Tru9I	TTAA	5 cut(s)	149, 828, 893, 1169, 1347
TscAI	CASTG	3 cut(s)	328, 868, 1059
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	3 cut(s)	372, 695, 867
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	8 cut(s)	29, 36, 419, 728, 861, 940, 1097, 1185
TspRI	CASTG	3 cut(s)	328, 868, 1059
Tth111I	GACNNNGTC	1 cut(s)	857
VpaK11BI	GGWCC	2 cut(s)	1223, 1255
VspI	ATTAAT	1 cut(s)	149
XapI	RAATTY	3 cut(s)	292, 473, 1124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1013
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	2 cut(s)	246, 902
ZrmI	AGTACT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.