Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Forward (+)

42040525 .. 42041085

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0304800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAATGGTGTGGAAACAGTGGAAGGAAAAGGAGATCATGAAGCGGCACTGGCTATATGGGACTGTGGCAGCCCCTTGTATGACTCGTATGAACTGGCATCGGTTAGTCATCTAATCGAGCGCCATCTGATGGCATTCCCATCTCTTGGAGGATCATCGAAGCGGTTCATAGCCAAGTTCTCTCATTCTTCTTCATCGAAGACGACCTCCACTACTAGTACTAGTACTACAATGAAGGAGGCAAAGGGGTCTAATTCAATGGAGGAAAACTTGAGCAAGATCTTGGGGATCAAGAAGATGTGGAAGAGGAAGGGTTTGTTTGGAGCAACGAAAGAAAAGACCAAGAAAATGAAGACCACTGGATTTTCTGGCTTTTACAGTAGGTTTGGTCTCTGGAGGAAGAAGGAATGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

138

Amino Acids

15.32

Weight (kDa)

9.81

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	402
AccB7I	CCANNNNNTGG	2 cut(s)	130, 146
AciI	CCGC	2 cut(s)	44, 163
AclWI	GGATC	2 cut(s)	160, 296
AfaI	GTAC	2 cut(s)	220, 226
AfiI	CCNNNNNNNGG	2 cut(s)	130, 146
AgsI	TTSAA	1 cut(s)	258
AhlI	ACTAGT	2 cut(s)	215, 221
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	160, 296
ApeKI	GCWGC	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	206, 359
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	3 cut(s)	124, 132, 148
BcoDI	GTCTC	1 cut(s)	395
BcuI	ACTAGT	2 cut(s)	215, 221
BfaI	CTAG	2 cut(s)	216, 222
BfoI	RGCGCY	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	402
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	2 cut(s)	45, 70
BlsI	GCNGC	2 cut(s)	46, 71
BmcAI	AGTACT	2 cut(s)	220, 226
BmsI	GCATC	1 cut(s)	107
BpiI	GAAGAC	2 cut(s)	206, 359
BpmI	CTGGAG	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 146
Bse1I	ACTGG	3 cut(s)	54, 99, 364
BseLI	CCNNNNNNNGG	2 cut(s)	130, 146
BseNI	ACTGG	3 cut(s)	54, 99, 364
BseXI	GCAGC	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	130, 146
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	2 cut(s)	134, 413
Bso31I	GGTCTC	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	34, 152, 279, 288
BspACI	CCGC	2 cut(s)	44, 163
BspHI	TCATGA	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	402
BspPI	GGATC	2 cut(s)	160, 296
BspTNI	GGTCTC	1 cut(s)	395
BsrI	ACTGG	3 cut(s)	54, 99, 364
BssMI	GATC	4 cut(s)	34, 152, 279, 288
Bst4CI	ACNGT	3 cut(s)	19, 65, 380
Bst6I	CTCTTC	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	37, 155, 282, 291
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	34, 152, 279, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	81
BstV2I	GAAGAC	2 cut(s)	206, 359
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BtsIMutI	CAGTG	3 cut(s)	24, 47, 357
BveI	ACCTGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	37
CfoI	GCGC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	219, 225
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	4 cut(s)	53, 72, 173, 372
CviKI_1	RGCY	4 cut(s)	53, 72, 173, 372
CviQI	GTAC	2 cut(s)	219, 225
DpnI	GATC	4 cut(s)	36, 154, 281, 290
DpnII	GATC	4 cut(s)	34, 152, 279, 288
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	395
FaeI	CATG	1 cut(s)	41
FaiI	YATR	6 cut(s)	39, 56, 58, 81, 90, 170
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	45, 70
Fsp4HI	GCNGC	2 cut(s)	45, 70
FspBI	CTAG	2 cut(s)	216, 222
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	45, 70
GsuI	CTGGAG	1 cut(s)	415
HaeII	RGCGCY	1 cut(s)	124
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	3 cut(s)	38, 292, 394
HpyAV	CCTTC	4 cut(s)	17, 229, 304, 397
HpyCH4III	ACNGT	3 cut(s)	19, 65, 380
HpyCH4V	TGCA	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	34, 152, 279, 288
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	6 cut(s)	35, 80, 345, 354, 379, 397
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	2 cut(s)	216, 222
MalI	GATC	4 cut(s)	36, 154, 281, 290
MboI	GATC	4 cut(s)	34, 152, 279, 288
MboII	GAAGA	7 cut(s)	180, 183, 211, 307, 316, 364, 412
MflI	RGATCY	1 cut(s)	279
MluCI	AATT	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	6 cut(s)	143, 217, 232, 256, 300, 390
MroXI	GAANNNNTTC	1 cut(s)	164
Mva1269I	GAATGC	2 cut(s)	134, 413
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	4 cut(s)	34, 152, 279, 288
NlaIII	CATG	1 cut(s)	41
PagI	TCATGA	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	402
PctI	GAATGC	2 cut(s)	134, 413
PdmI	GAANNNNTTC	1 cut(s)	164
PflMI	CCANNNNNTGG	2 cut(s)	130, 146
PkrI	GCNGC	2 cut(s)	46, 71
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	279
RsaI	GTAC	2 cut(s)	220, 226
RsaNI	GTAC	2 cut(s)	219, 225
SatI	GCNGC	2 cut(s)	45, 70
Sau3AI	GATC	4 cut(s)	34, 152, 279, 288
ScaI	AGTACT	2 cut(s)	220, 226
SchI	GAGTC	1 cut(s)	77
SetI	ASST	3 cut(s)	209, 386, 416
SfaNI	GCATC	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
SpeI	ACTAGT	2 cut(s)	215, 221
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	2 cut(s)	44, 163
SspMI	CTAG	2 cut(s)	216, 222
TaaI	ACNGT	3 cut(s)	19, 65, 380
TaqI	TCGA	3 cut(s)	117, 158, 197
TasI	AATT	1 cut(s)	253
TatI	WGTACW	2 cut(s)	218, 224
TauI	GCSGC	1 cut(s)	47
TscAI	CASTG	3 cut(s)	24, 54, 364
TseI	GCWGC	1 cut(s)	69
TspDTI	ATGAA	7 cut(s)	17, 54, 105, 157, 183, 248, 365
TspRI	CASTG	3 cut(s)	24, 54, 364
Van91I	CCANNNNNTGG	2 cut(s)	130, 146
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	216, 222
ZrmI	AGTACT	2 cut(s)	220, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.