Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

54627176 .. 54627817

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCTGGAAACGCCTCATCTCCCCAGACACCGAGAAAGGAACGACCGAACGATTGATCCTTGGAGCTTAGAAATTGGCACTAATGACCCTAATGAAACTGAGAGTTCTCGTTTCGAGTACTTTATAAGAAGGTTTGCCCGCGAATTTGAACTTGATTGGAGACTTTTCTCGGTCCCTAAATTTATCGAATATGTTATTAATCGTAGCAACGGAGAAACGCAATTTCTCAAGCTACCTGGAATTTGCAGTAGCTATAGCTTTGCTATAAGTGAAATTCTGAAACACATCAACAAGAAGTGCAGGAAGTTGTGTGGGTTGCATCTGTCTGATGCGTCCATCAATGAAGATGAGGCTGCAGCAATTGTAAAATTTGTGCCTAATGTTAAGTACTTGTGCTTGAGGAAGTCACGCGTCAGTAGGAATAATCTGGTGAAAATACTGAAAGGCTGCAAAGACCTTGAGCTTTTGGATGTGAGGGAGTGTAGTGGTTTTGATGAGTGTCATGAGGAAATATTGGAGCTTGCATCTCACATTCCTAAATTCATGTATGCTGGTTCTAAACACCACTACGTCTTTGAGATTGATCCCCTAATTGAGATTTATGGGGTGGAAGACGAAGACGAAGACGAAGAGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

213

Amino Acids

24.93

Weight (kDa)

5.29

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
AccII	CGCG	2 cut(s)	141, 411
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	50, 578
AcsI	RAATTY	6 cut(s)	143, 179, 240, 273, 368, 539
AfaI	GTAC	2 cut(s)	119, 389
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	235
AloI	GAACNNNNNNTCC	2 cut(s)	40, 72
AluBI	AGCT	6 cut(s)	66, 232, 252, 258, 463, 520
AluI	AGCT	6 cut(s)	66, 232, 252, 258, 463, 520
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	50, 578
ApeKI	GCWGC	3 cut(s)	353, 356, 447
ApoI	RAATTY	6 cut(s)	143, 179, 240, 273, 368, 539
AseI	ATTAAT	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	172
BbsI	GAAGAC	3 cut(s)	618, 624, 630
BbvI	GCAGC	3 cut(s)	340, 368, 434
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	154
BfmI	CTRYAG	2 cut(s)	253, 354
BisI	GCNGC	3 cut(s)	354, 357, 448
BlsI	GCNGC	3 cut(s)	355, 358, 449
BmcAI	AGTACT	2 cut(s)	119, 389
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	3 cut(s)	319, 328, 533
BpiI	GAAGAC	3 cut(s)	618, 624, 630
BpuEI	CTTGAG	3 cut(s)	212, 418, 479
BsaJI	CCNNGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	340, 368, 434
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	2 cut(s)	141, 411
Bsh1285I	CGRYCG	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	55, 583
BspACI	CCGC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	141, 411
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	2 cut(s)	50, 578
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	55, 583
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	139, 522
BstDEI	CTNAG	2 cut(s)	67, 99
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	2 cut(s)	141, 411
BstKTI	GATC	2 cut(s)	58, 586
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	2 cut(s)	55, 583
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	2 cut(s)	253, 354
BstUI	CGCG	2 cut(s)	141, 411
BstV1I	GCAGC	3 cut(s)	340, 368, 434
BstV2I	GAAGAC	3 cut(s)	618, 624, 630
BtsCI	GGATG	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	139, 522
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	2 cut(s)	321, 400
Csp6I	GTAC	2 cut(s)	118, 388
CviAII	CATG	2 cut(s)	503, 544
CviJI	RGCY	9 cut(s)	66, 232, 252, 258, 353, 447, 463, 520, 635
CviKI_1	RGCY	9 cut(s)	66, 232, 252, 258, 353, 447, 463, 520, 635
CviQI	GTAC	2 cut(s)	118, 388
DdeI	CTNAG	2 cut(s)	67, 99
DpnI	GATC	2 cut(s)	57, 585
DpnII	GATC	2 cut(s)	55, 583
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco130I	CCWWGG	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	2 cut(s)	506, 547
FaiI	YATR	8 cut(s)	125, 192, 255, 266, 504, 545, 549, 603
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	2 cut(s)	502, 543
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	3 cut(s)	354, 357, 448
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	3 cut(s)	354, 357, 448
GluI	GCNGC	3 cut(s)	354, 357, 448
HgaI	GACGC	2 cut(s)	321, 400
Hin1II	CATG	2 cut(s)	506, 547
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	279, 328
Hpy188III	TCNNGA	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	6 cut(s)	246, 300, 319, 356, 450, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	67, 99
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	2 cut(s)	506, 547
Kzo9I	GATC	2 cut(s)	55, 583
LmnI	GCTCC	2 cut(s)	63, 517
LpnPI	CCDG	6 cut(s)	37, 222, 249, 286, 413, 537
Lsp1109I	GCAGC	3 cut(s)	340, 368, 434
LweI	GCATC	3 cut(s)	319, 328, 533
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	2 cut(s)	57, 585
MboI	GATC	2 cut(s)	55, 583
MboII	GAAGA	5 cut(s)	356, 623, 629, 635, 641
MfeI	CAATTG	1 cut(s)	360
MluI	ACGCGT	1 cut(s)	409
MnlI	CCTC	6 cut(s)	24, 343, 393, 468, 499, 625
MseI	TTAA	2 cut(s)	198, 384
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	2 cut(s)	141, 411
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	55, 583
NlaIII	CATG	2 cut(s)	506, 547
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	405
PagI	TCATGA	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	355, 358, 449
PshBI	ATTAAT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	358
RsaI	GTAC	2 cut(s)	119, 389
RsaNI	GTAC	2 cut(s)	118, 388
SaqAI	TTAA	2 cut(s)	198, 384
SatI	GCNGC	3 cut(s)	354, 357, 448
Sau3AI	GATC	2 cut(s)	55, 583
Sau96I	GGNCC	1 cut(s)	172
ScaI	AGTACT	2 cut(s)	119, 389
ScrFI	CCNGG	1 cut(s)	237
SfaNI	GCATC	3 cut(s)	319, 328, 533
SfcI	CTRYAG	2 cut(s)	253, 354
SinI	GGWCC	1 cut(s)	172
SmlI	CTYRAG	3 cut(s)	227, 397, 458
SmoI	CTYRAG	3 cut(s)	227, 397, 458
SsiI	CCGC	1 cut(s)	139
SspI	AATATT	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	59
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	114, 186
TaqII	GACCGA	2 cut(s)	60, 160
TatI	WGTACW	2 cut(s)	117, 387
Tru1I	TTAA	2 cut(s)	198, 384
Tru9I	TTAA	2 cut(s)	198, 384
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	3 cut(s)	353, 356, 447
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	3 cut(s)	108, 357, 532
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	172
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	6 cut(s)	143, 179, 240, 273, 368, 539
ZrmI	AGTACT	2 cut(s)	119, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.