Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

53497198 .. 53497989

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGACCACCACCTTGTCAACTTCTCCGGCGCCGACCGCCGGACCTCTGATCGGACATGGGAAGATTTACCCAAAGACTGTTTGCTCAATATCTTGGAGAGAGTCGGAACAGAGTCTTTACTAATGTTCGTCCCTTTGGTCTGCAAATCTTGGTACAGAGCAAGCCTCAGTTCTTCTTGCTGGAAACGCCTCTTTTTCCCGGCGGAGATTGAAAAAGGTACTGTCATTTATCCTTGGAGCTTTCCCGTTTCTACTTCCGACGACGATGATCAGAGCACTAGTTTCGATTACGTTATCAGAAGATATGCAAAGGAGTTTGGGATTGAATGGAGTCGTTTCTATGTTTCTAAGTTCATCAAGTTTGCGGTTAATCGTAGCCAAGGGGAGACCCAGTTTCTCAAGGTACCCGGAATTTGCAGCCACTATATGAATGCAATGAGAGAGATACTAGAACACATTGGGAGGAATTGTAGAGGTTTTGAGGGTTTGCATATGTCTCATGCATTGGTTGATGTGGATTTGGCTAAGGACATTGTGAAATATGTGCCGCAGATTAAGTATTTGTGCTTGAAGAAGGCCAAGATTGGCCGGATTGAGCTTATTGTGTTGATCAAGGGGTGCAGGGAGCTTAAGGTTTTGGATGTTAGGGACTGCCTGGGTTTTACTGAGGGTGATAGGGAAATAGCAGAGCTTGGTTCTCACATTGGAGAGTTTATGATGGAGGGTTCGAGACAATTCAGGAGACGAGATTGGGTTGAGGTTGCTGGGGTTGTTCAGGTTGATGAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

30.48

Weight (kDa)

6.4

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	20 - 66	5.4e-08	F-box-like
F-box	PF00646	20 - 62	1.4e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	403
AccB1I	GGYRCC	2 cut(s)	29, 403
AciI	CCGC	4 cut(s)	37, 203, 365, 548
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	3 cut(s)	155, 220, 405
AfiI	CCNNNNNNNGG	2 cut(s)	39, 51
AflII	CTTAAG	1 cut(s)	629
AgsI	TTSAA	3 cut(s)	212, 326, 571
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	4 cut(s)	240, 598, 628, 691
AluI	AGCT	4 cut(s)	240, 598, 628, 691
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	4 cut(s)	380, 501, 724, 736
AoxI	GGCC	2 cut(s)	576, 586
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	411
Asp718I	GGTACC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	4, 42
AsuC2I	CCSGG	2 cut(s)	200, 408
AsuHPI	GGTGA	1 cut(s)	683
AvaII	GGWCC	2 cut(s)	4, 42
BanI	GGYRCC	2 cut(s)	29, 403
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	1 cut(s)	712
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	656
BclI	TGATCA	2 cut(s)	268, 609
BcnI	CCSGG	2 cut(s)	200, 408
BcoDI	GTCTC	4 cut(s)	380, 501, 724, 736
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	2 cut(s)	279, 449
BfoI	RGCGCY	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	629
BisI	GCNGC	2 cut(s)	418, 548
BlsI	GCNGC	2 cut(s)	419, 549
Bme1390I	CCNGG	3 cut(s)	200, 408, 656
Bme18I	GGWCC	2 cut(s)	4, 42
BmgT120I	GGNCC	2 cut(s)	4, 42
BmiI	GGNNCC	2 cut(s)	31, 405
BmrFI	CCNGG	3 cut(s)	200, 408, 656
BmrI	ACTGGG	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	385
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	2 cut(s)	200, 408
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	233, 379, 655
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 454, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 51
Bse1I	ACTGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	3 cut(s)	233, 379, 655
BseGI	GGATG	1 cut(s)	646
BseLI	CCNNNNNNNGG	2 cut(s)	39, 51
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	181, 657
BseNI	ACTGG	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	429
BseYI	CCCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	640
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	578, 588
BshNI	GGYRCC	2 cut(s)	29, 403
BsiEI	CGRYCG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	5 cut(s)	27, 40, 200, 408, 589
BslFI	GGGAC	2 cut(s)	116, 662
BslI	CCNNNNNNNGG	2 cut(s)	39, 51
BsmAI	GTCTC	4 cut(s)	380, 501, 724, 736
BsmBI	CGTCTC	1 cut(s)	736
BsmFI	GGGAC	2 cut(s)	116, 662
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	578, 588
Bso31I	GGTCTC	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	49, 268, 609
BspACI	CCGC	4 cut(s)	37, 203, 365, 548
BspANI	GGCC	2 cut(s)	578, 588
BspCNI	CTCAG	2 cut(s)	180, 658
BspLI	GGNNCC	2 cut(s)	31, 405
BspT107I	GGYRCC	2 cut(s)	29, 403
BspTI	CTTAAG	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	3 cut(s)	233, 379, 655
BssMI	GATC	3 cut(s)	49, 268, 609
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	2 cut(s)	233, 379
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	2 cut(s)	80, 223
BstACI	GRCGYC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	4 cut(s)	167, 348, 525, 666
BstF5I	GGATG	1 cut(s)	646
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	3 cut(s)	52, 271, 612
BstMAI	GTCTC	4 cut(s)	380, 501, 724, 736
BstMBI	GATC	3 cut(s)	49, 268, 609
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 186
BstNI	CCWGG	1 cut(s)	656
BstSCI	CCNGG	3 cut(s)	198, 406, 654
BstV1I	GCAGC	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	578, 588
BtsCI	GGATG	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	4, 42
Csp6I	GTAC	3 cut(s)	154, 219, 404
CviAII	CATG	2 cut(s)	57, 500
CviQI	GTAC	3 cut(s)	154, 219, 404
DdeI	CTNAG	4 cut(s)	167, 348, 525, 666
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	3 cut(s)	51, 270, 611
DpnII	GATC	3 cut(s)	49, 268, 609
EaeI	YGGCCR	1 cut(s)	586
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	233, 379
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	2 cut(s)	4, 42
EcoRII	CCWGG	1 cut(s)	654
EcoT14I	CCWWGG	2 cut(s)	233, 379
EcoT22I	ATGCAT	1 cut(s)	505
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	233, 379
Esp3I	CGTCTC	1 cut(s)	736
FaeI	CATG	2 cut(s)	60, 503
FaqI	GGGAC	2 cut(s)	116, 662
FatI	CATG	2 cut(s)	56, 499
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	2 cut(s)	268, 609
Fnu4HI	GCNGC	2 cut(s)	418, 548
FokI	GGATG	1 cut(s)	653
Fsp4HI	GCNGC	2 cut(s)	418, 548
FspBI	CTAG	2 cut(s)	279, 449
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	418, 548
GsaI	CCCAGC	1 cut(s)	768
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	578, 588
HapII	CCGG	5 cut(s)	27, 40, 200, 408, 589
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	60, 503
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	102, 113, 331
HpaII	CCGG	5 cut(s)	27, 40, 200, 408, 589
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	6 cut(s)	49, 54, 107, 259, 273, 299
Hpy188III	TCNNGA	2 cut(s)	729, 739
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	2 cut(s)	263, 266
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	2 cut(s)	80, 223
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	144, 308, 417, 434, 490, 503, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 186
HpyF3I	CTNAG	4 cut(s)	167, 348, 525, 666
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	60, 503
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
KpnI	GGTACC	1 cut(s)	407
Ksp22I	TGATCA	2 cut(s)	268, 609
Kzo9I	GATC	3 cut(s)	49, 268, 609
LmnI	GCTCC	2 cut(s)	237, 625
Lsp1109I	GCAGC	1 cut(s)	429
MaeI	CTAG	2 cut(s)	279, 449
MaeII	ACGT	1 cut(s)	291
MalI	GATC	3 cut(s)	51, 270, 611
MboI	GATC	3 cut(s)	49, 268, 609
MboII	GAAGA	4 cut(s)	74, 165, 312, 583
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	3 cut(s)	411, 466, 734
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	3 cut(s)	111, 122, 340
MmeI	TCCRAC	2 cut(s)	85, 282
Mph1103I	ATGCAT	1 cut(s)	505
MseI	TTAA	3 cut(s)	369, 555, 630
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	5 cut(s)	27, 40, 200, 408, 589
MspR9I	CCNGG	3 cut(s)	200, 408, 656
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	36, 186
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	2 cut(s)	200, 408
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	3 cut(s)	49, 268, 609
NlaIII	CATG	2 cut(s)	60, 503
NlaIV	GGNNCC	2 cut(s)	31, 405
NsiI	ATGCAT	1 cut(s)	505
PctI	GAATGC	1 cut(s)	436
PkrI	GCNGC	2 cut(s)	419, 549
PleI	GAGTC	3 cut(s)	110, 121, 339
PluTI	GGCGCC	1 cut(s)	33
PpsI	GAGTC	3 cut(s)	110, 121, 339
Psp6I	CCWGG	1 cut(s)	654
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	31, 405
PspPI	GGNCC	2 cut(s)	4, 42
RsaI	GTAC	3 cut(s)	155, 220, 405
RsaNI	GTAC	3 cut(s)	154, 219, 404
SaqAI	TTAA	3 cut(s)	369, 555, 630
SatI	GCNGC	2 cut(s)	418, 548
Sau3AI	GATC	3 cut(s)	49, 268, 609
Sau96I	GGNCC	2 cut(s)	4, 42
SchI	GAGTC	3 cut(s)	111, 122, 340
ScrFI	CCNGG	3 cut(s)	200, 408, 656
SduI	GDGCHC	1 cut(s)	278
SfoI	GGCGCC	1 cut(s)	31
SinI	GGWCC	2 cut(s)	4, 42
SmlI	CTYRAG	2 cut(s)	398, 629
SmoI	CTYRAG	2 cut(s)	398, 629
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	3 cut(s)	411, 466, 734
SsiI	CCGC	4 cut(s)	37, 203, 365, 548
SspDI	GGCGCC	1 cut(s)	29
SspMI	CTAG	2 cut(s)	279, 449
StyD4I	CCNGG	3 cut(s)	198, 406, 654
StyI	CCWWGG	2 cut(s)	233, 379
TaaI	ACNGT	2 cut(s)	80, 223
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	285, 728
TasI	AATT	3 cut(s)	411, 466, 734
TauI	GCSGC	1 cut(s)	550
Tru1I	TTAA	3 cut(s)	369, 555, 630
Tru9I	TTAA	3 cut(s)	369, 555, 630
TseI	GCWGC	1 cut(s)	417
TspDTI	ATGAA	2 cut(s)	343, 443
Vha464I	CTTAAG	1 cut(s)	629
VpaK11BI	GGWCC	2 cut(s)	4, 42
XapI	RAATTY	1 cut(s)	411
XspI	CTAG	2 cut(s)	279, 449
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.