Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003061

Physical Location & Seq

Genomic Coordinates Reverse (-)

54612069 .. 54612986

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58790

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCTTCCTCTGGAAACCCTCCGCAGCAGCTCTCTAGGTCTAGAATCATGTTCATCGACCACTTCGCCCCACGGCCAAATCCAACCTTGGAGTACTGGCATCTGAATCCCACCCCCAGAAGTCGTCATGATCGGAAGTGGGAGGATCTAGAATCCGACTGCCTTGTCAATATCTTTCAAAGAGTTGGTATGGAGTCAATGCTGATGTTCATCCCCTTTGTTTGCAAATCGTGGCACAAAGCTAGCCGCACTCCGGCTGTCTGGAAGAGCCTCATCTTTCCTGAAGGTTATTGGTTTGATTTGTTTCTGAGGAAATTTGCTCGGGAATTTGACATTCCATGGAGTAACTTCACTGTTCCCAAATTTGTCAACTTGGCGATCAATCGCAGCGAAGGAGGTGCTGAATTTCTCAAGCTACCTGGACTGATTTGCAGCGTATATATGTATGCCATGAAACAAATTCTGAACCACATCAAAGACAACAACTGCAGCAACTTCAAAGGGTTGCATATGGCTGATGCCTATATTACTTGCAAGGATGCGTCGGCGATGGTGAGATGTGTGCCTGAACTCAGGTACTTGTGCTTCAGGAGGGCAACACTGAGTAAGAAGAGTCTTCTCAAAATACTGCGAGTCTGCAGAGATCTTGAGGTTTTGGATGTGAGGGGTTGTACTGGTTTCGACGAGGATGACGAAGAAATACTGGAGCTTGCTTCTCATATTCCCAAGTTTATGTGTGCTGGTTCTCATCTCCAGCCTGATTTTGTTTCTGGTCGAATTATTCTGCCTTATGATGACGAAGATGATGAAGAAGAGCACAAAGAAGAGGGTCAACAAGAGAACCGAGGACAGGGCCAACAAGAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

289

Amino Acids

33.55

Weight (kDa)

6.02

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003061)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12570 FvH4_3g12570 FvH4_6g07650 FvH4_7g19271 FvH4_7g19272
malus_domestica	MD07G1173200.v1.1
prunus_persica	Prupe.2G212400_v2.0.a1 Prupe.5G001500_v2.0.a1
pyrus_communis	pycom07g16790
rosa_chinensis	RchiOBHm_Chr1g0363121 RchiOBHm_Chr1g0363131 RchiOBHm_Chr1g0363141
rosa_laevigata	RLG00000027589 RLG00000027591 RLG00000027592
rosa_multiflora	Rmu_co8316487.1_g000001 Rmu_sc0004472.1_g000010 Rmu_sc0005586.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293420 Rroxscaffold_4G00293430 Rroxscaffold_4G00293450
rosa_rugosa	Rorug01G0304700 Rorug01G0304700 Rorug01G0304800 Rorug01G0304900 Rorug01G0305000
rosa_samantha	Rh1AG313600 Rh1AG313700 Rh1BG277000 Rh1BG277100 Rh1BG277200 Rh1CG293600 Rh1CG293700 Rh1DG307600 Rh1DG307700 Rh1DG307800
rosa_wichuraiana	Rw1G027790 Rw1G027800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AciI	CCGC	2 cut(s)	23, 247
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	5 cut(s)	314, 326, 362, 404, 459
AcuI	CTGAAG	2 cut(s)	303, 571
AfaI	GTAC	3 cut(s)	95, 578, 673
AfiI	CCNNNNNNNGG	3 cut(s)	253, 850, 862
AgsI	TTSAA	2 cut(s)	179, 499
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	4 cut(s)	31, 242, 415, 709
AluI	AGCT	4 cut(s)	31, 242, 415, 709
Alw21I	GWGCWC	1 cut(s)	819
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	74, 853
ApeKI	GCWGC	5 cut(s)	25, 28, 387, 432, 489
ApoI	RAATTY	5 cut(s)	314, 326, 362, 404, 459
AspS9I	GGNCC	1 cut(s)	853
AsuHPI	GGTGA	1 cut(s)	565
AsuNHI	GCTAGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	321
BarI	GAAGNNNNNNTAC	2 cut(s)	569, 601
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	819
BbvI	GCAGC	5 cut(s)	37, 40, 399, 444, 501
BccI	CCATC	1 cut(s)	544
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	420
BfaI	CTAG	5 cut(s)	36, 42, 149, 243, 868
BfmI	CTRYAG	2 cut(s)	487, 637
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	6 cut(s)	26, 29, 247, 388, 433, 490
BlsI	GCNGC	6 cut(s)	27, 30, 248, 389, 434, 491
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	853
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	3 cut(s)	109, 508, 529
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	2 cut(s)	725, 737
BpuEI	CTTGAG	2 cut(s)	395, 668
BsaBI	GATNNNNATC	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	71, 87, 338, 844
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 850, 862
Bse1I	ACTGG	3 cut(s)	101, 679, 708
Bse8I	GATNNNNATC	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	4 cut(s)	71, 87, 338, 844
BseGI	GGATG	4 cut(s)	210, 544, 664, 694
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	3 cut(s)	253, 850, 862
BseMII	CTCAG	3 cut(s)	299, 586, 593
BseNI	ACTGG	3 cut(s)	101, 679, 708
BseXI	GCAGC	5 cut(s)	37, 40, 399, 444, 501
BshFI	GGCC	2 cut(s)	76, 855
BsiHKAI	GWGCWC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	253, 850, 862
BsnI	GGCC	2 cut(s)	76, 855
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp143I	GATC	4 cut(s)	130, 145, 378, 643
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	2 cut(s)	23, 247
BspANI	GGCC	2 cut(s)	76, 855
BspCNI	CTCAG	3 cut(s)	300, 585, 594
BspHI	TCATGA	1 cut(s)	127
BspMAI	CTGCAG	2 cut(s)	491, 641
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	153
BspQI	GCTCTTC	2 cut(s)	260, 807
BsrI	ACTGG	3 cut(s)	101, 679, 708
BssECI	CCNNGG	4 cut(s)	71, 87, 338, 844
BssMI	GATC	4 cut(s)	130, 145, 378, 643
BssT1I	CCWWGG	2 cut(s)	87, 338
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	4 cut(s)	260, 605, 807, 819
BstC8I	GCNNGC	2 cut(s)	244, 711
BstDEI	CTNAG	3 cut(s)	308, 572, 602
BstDSI	CCRYGG	2 cut(s)	71, 338
BstF5I	GGATG	4 cut(s)	210, 544, 664, 694
BstKTI	GATC	4 cut(s)	133, 148, 381, 646
BstMBI	GATC	4 cut(s)	130, 145, 378, 643
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	2 cut(s)	487, 637
BstV1I	GCAGC	5 cut(s)	37, 40, 399, 444, 501
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	2 cut(s)	145, 643
BstYI	RGATCY	2 cut(s)	145, 643
BsuRI	GGCC	2 cut(s)	76, 855
BtgI	CCRYGG	2 cut(s)	71, 338
BtgZI	GCGATG	1 cut(s)	563
BtsCI	GGATG	4 cut(s)	210, 544, 664, 694
BtsIMutI	CAGTG	2 cut(s)	351, 599
Cac8I	GCNNGC	2 cut(s)	244, 711
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	853
CseI	GACGC	1 cut(s)	531
Csp6I	GTAC	3 cut(s)	94, 577, 672
CviAII	CATG	4 cut(s)	49, 128, 339, 451
CviQI	GTAC	3 cut(s)	94, 577, 672
DdeI	CTNAG	3 cut(s)	308, 572, 602
DpnI	GATC	4 cut(s)	132, 147, 380, 645
DpnII	GATC	4 cut(s)	130, 145, 378, 643
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	4 cut(s)	260, 605, 807, 819
EarI	CTCTTC	4 cut(s)	260, 605, 807, 819
Eco130I	CCWWGG	2 cut(s)	87, 338
Eco57I	CTGAAG	2 cut(s)	303, 571
Eco88I	CYCGRG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	87, 338
ErhI	CCWWGG	2 cut(s)	87, 338
FaeI	CATG	4 cut(s)	52, 131, 342, 454
FatI	CATG	4 cut(s)	48, 127, 338, 450
FauNDI	CATATG	1 cut(s)	510
Fnu4HI	GCNGC	6 cut(s)	26, 29, 247, 388, 433, 490
FokI	GGATG	4 cut(s)	197, 551, 671, 701
Fsp4HI	GCNGC	6 cut(s)	26, 29, 247, 388, 433, 490
FspBI	CTAG	5 cut(s)	36, 42, 149, 243, 868
GluI	GCNGC	6 cut(s)	26, 29, 247, 388, 433, 490
GsuI	CTGGAG	2 cut(s)	725, 737
HaeIII	GGCC	2 cut(s)	76, 855
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	531
Hin1II	CATG	4 cut(s)	52, 131, 342, 454
HincII	GTYRAC	2 cut(s)	370, 833
HindII	GTYRAC	2 cut(s)	370, 833
HinfI	GANTC	6 cut(s)	45, 106, 152, 194, 613, 633
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	370, 833
Hpy188I	TCNGA	5 cut(s)	105, 135, 157, 309, 465
Hpy188III	TCNNGA	9 cut(s)	12, 42, 128, 149, 262, 281, 323, 589, 647
Hpy8I	GTNNAC	2 cut(s)	370, 833
Hpy99I	CGWCG	2 cut(s)	547, 686
HpyAV	CCTTC	2 cut(s)	278, 386
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	6 cut(s)	225, 432, 489, 508, 534, 639
HpyF3I	CTNAG	3 cut(s)	308, 572, 602
Hsp92II	CATG	4 cut(s)	52, 131, 342, 454
Kzo9I	GATC	4 cut(s)	130, 145, 378, 643
LguI	GCTCTTC	2 cut(s)	260, 807
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	5 cut(s)	37, 40, 399, 444, 501
LweI	GCATC	3 cut(s)	109, 508, 529
MaeI	CTAG	5 cut(s)	36, 42, 149, 243, 868
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	4 cut(s)	132, 147, 380, 645
MboI	GATC	4 cut(s)	130, 145, 378, 643
MboII	GAAGA	8 cut(s)	277, 608, 622, 707, 812, 821, 824, 836
MflI	RGATCY	2 cut(s)	145, 643
MhlI	GDGCHC	1 cut(s)	819
MluCI	AATT	6 cut(s)	314, 326, 362, 404, 459, 777
MlyI	GAGTC	3 cut(s)	203, 622, 642
MmeI	TCCRAC	2 cut(s)	107, 180
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	4 cut(s)	130, 145, 378, 643
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	4 cut(s)	52, 131, 342, 454
PagI	TCATGA	1 cut(s)	127
PciSI	GCTCTTC	2 cut(s)	260, 807
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	45, 106, 152
PkrI	GCNGC	6 cut(s)	27, 30, 248, 389, 434, 491
PleI	GAGTC	3 cut(s)	202, 621, 641
PpsI	GAGTC	3 cut(s)	202, 621, 641
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	853
PstI	CTGCAG	2 cut(s)	491, 641
PsuI	RGATCY	2 cut(s)	145, 643
RsaI	GTAC	3 cut(s)	95, 578, 673
RsaNI	GTAC	3 cut(s)	94, 577, 672
SapI	GCTCTTC	2 cut(s)	260, 807
SatI	GCNGC	6 cut(s)	26, 29, 247, 388, 433, 490
Sau3AI	GATC	4 cut(s)	130, 145, 378, 643
Sau96I	GGNCC	1 cut(s)	853
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	3 cut(s)	203, 622, 642
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	3 cut(s)	109, 508, 529
SfcI	CTRYAG	2 cut(s)	487, 637
SmlI	CTYRAG	2 cut(s)	410, 647
SmoI	CTYRAG	2 cut(s)	410, 647
Sse9I	AATT	6 cut(s)	314, 326, 362, 404, 459, 777
SsiI	CCGC	2 cut(s)	23, 247
SspMI	CTAG	5 cut(s)	36, 42, 149, 243, 868
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	2 cut(s)	87, 338
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	3 cut(s)	57, 681, 775
TasI	AATT	6 cut(s)	314, 326, 362, 404, 459, 777
TatI	WGTACW	2 cut(s)	93, 671
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	3 cut(s)	45, 106, 152
TscAI	CASTG	2 cut(s)	358, 606
TseI	GCWGC	5 cut(s)	25, 28, 387, 432, 489
TspDTI	ATGAA	4 cut(s)	43, 199, 467, 822
TspRI	CASTG	2 cut(s)	358, 606
XapI	RAATTY	5 cut(s)	314, 326, 362, 404, 459
XbaI	TCTAGA	2 cut(s)	41, 148
XspI	CTAG	5 cut(s)	36, 42, 149, 243, 868
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.