Nuclear-pore
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G79280 AT1G79280 AT1G79280 |
| fragaria_vesca | FvH4_3g13850 FvH4_3g13850 |
| malus_domestica | MD05G1240600.v1.1 MD10G1218600.v1.1 MD10G1218800.v1.1 MD10G1219000.v1.1 |
| prunus_persica | Prupe.4G125000_v2.0.a1 Prupe.4G125000_v2.0.a1 Prupe.4G125000_v2.0.a1 |
| pyrus_communis | pycom05g21650 pycom05g21660 pycom05g21670 pycom05g21680 pycom09g00980 pycom10g18440 pycom10g18450 |
| rosa_chinensis | RchiOBHm_Chr5g0023031 |
| rosa_laevigata | RLG00000032692 RLG00000032694 |
| rosa_multiflora | Rmu_co8489363.1_g000001 Rmu_sc0002675.1_g000017 Rmu_sc0003955.1_g000002 Rmu_sc0015264.1_g000001 Rmu_sc0015264.1_g000002 Rmu_sc0017996.1_g000001 Rmu_sc0029290.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00056280 Rroxscaffold_7G00176540 |
| rosa_rugosa | Rorug05G0076700 |
| rosa_samantha | Rh5AG163000 Rh5BG162200 Rh5CG176900 Rh5DG163500 |
| rosa_wichuraiana | Rw5G014700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 764 |
| Acc36I | ACCTGC | 5 cut(s) | 164, 1147, 2620, 4072, 6094 |
| Acc65I | GGTACC | 1 cut(s) | 4760 |
| AccB1I | GGYRCC | 4 cut(s) | 4760, 4883, 5602, 6261 |
| AccBSI | CCGCTC | 2 cut(s) | 1382, 5363 |
| AccI | GTMKAC | 1 cut(s) | 2513 |
| AccII | CGCG | 8 cut(s) | 42, 77, 224, 1227, 2472, 2601, 6240, 6250 |
| AccIII | TCCGGA | 1 cut(s) | 84 |
| AclWI | GGATC | 9 cut(s) | 2778, 2791, 4335, 4356, 4454, 5590, 5939, 6276, 6289 |
| AcoI | YGGCCR | 2 cut(s) | 34, 3510 |
| AcsI | RAATTY | 9 cut(s) | 692, 1126, 2132, 2186, 2848, 2939, 3117, 4503, 5851 |
| AcyI | GRCGYC | 4 cut(s) | 48, 129, 761, 6262 |
| AdeI | CACNNNGTG | 1 cut(s) | 3716 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 484, 720, 5612, 6215, 6272 |
| AflII | CTTAAG | 2 cut(s) | 1805, 4312 |
| AflIII | ACRYGT | 3 cut(s) | 75, 2883, 4224 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 6191 |
| AhlI | ACTAGT | 1 cut(s) | 6071 |
| AjiI | CACGTC | 1 cut(s) | 6278 |
| AjnI | CCWGG | 6 cut(s) | 2093, 2724, 2754, 3168, 5056, 5743 |
| Alw21I | GWGCWC | 6 cut(s) | 105, 264, 1641, 2459, 3318, 3501 |
| Alw44I | GTGCAC | 2 cut(s) | 1637, 3497 |
| AlwI | GGATC | 9 cut(s) | 2778, 2791, 4335, 4356, 4454, 5590, 5939, 6276, 6289 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1468, 4513 |
| Ama87I | CYCGRG | 3 cut(s) | 167, 209, 443 |
| Aor13HI | TCCGGA | 1 cut(s) | 84 |
| ApaLI | GTGCAC | 2 cut(s) | 1637, 3497 |
| ApoI | RAATTY | 9 cut(s) | 692, 1126, 2132, 2186, 2848, 2939, 3117, 4503, 5851 |
| AseI | ATTAAT | 1 cut(s) | 309 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1887 |
| Asp718I | GGTACC | 1 cut(s) | 4760 |
| AspLEI | GCGC | 9 cut(s) | 121, 226, 252, 783, 1227, 3228, 6242, 6250, 6264 |
| AspS9I | GGNCC | 6 cut(s) | 487, 2038, 4576, 5076, 5139, 5285 |
| AsuC2I | CCSGG | 1 cut(s) | 3806 |
| AsuII | TTCGAA | 2 cut(s) | 5150, 5218 |
| AsuNHI | GCTAGC | 2 cut(s) | 2027, 5353 |
| AvaI | CYCGRG | 3 cut(s) | 167, 209, 443 |
| AvaII | GGWCC | 3 cut(s) | 4576, 5139, 5285 |
| AxyI | CCTNAGG | 1 cut(s) | 4755 |
| BaeGI | GKGCMC | 5 cut(s) | 1641, 3501, 3682, 4888, 5607 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 4752, 4785, 5539, 5572 |
| BamHI | GGATCC | 2 cut(s) | 2783, 6281 |
| BanI | GGYRCC | 4 cut(s) | 4760, 4883, 5602, 6261 |
| BanII | GRGCYC | 3 cut(s) | 105, 264, 5640 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5880, 5912 |
| BbsI | GAAGAC | 6 cut(s) | 344, 1031, 1079, 3204, 4616, 4742 |
| Bbv12I | GWGCWC | 6 cut(s) | 105, 264, 1641, 2459, 3318, 3501 |
| BbvCI | CCTCAGC | 5 cut(s) | 504, 1152, 1401, 2304, 2706 |
| BciT130I | CCWGG | 6 cut(s) | 2095, 2726, 2756, 3170, 5058, 5745 |
| BciVI | GTATCC | 1 cut(s) | 5272 |
| BclI | TGATCA | 2 cut(s) | 915, 1416 |
| BcnI | CCSGG | 1 cut(s) | 3806 |
| BcuI | ACTAGT | 1 cut(s) | 6071 |
| BfmI | CTRYAG | 8 cut(s) | 1014, 2052, 2429, 2700, 3779, 4464, 4977, 5952 |
| BfoI | RGCGCY | 2 cut(s) | 253, 6265 |
| BfrI | CTTAAG | 2 cut(s) | 1805, 4312 |
| BfuAI | ACCTGC | 5 cut(s) | 164, 1147, 2620, 4072, 6094 |
| BfuI | GTATCC | 1 cut(s) | 5272 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 42, 3686 |
| BglII | AGATCT | 6 cut(s) | 818, 1018, 2080, 4171, 5093, 5815 |
| BlpI | GCTNAGC | 1 cut(s) | 1722 |
| BmcAI | AGTACT | 2 cut(s) | 3474, 6070 |
| Bme1390I | CCNGG | 7 cut(s) | 2095, 2726, 2756, 3170, 3806, 5058, 5745 |
| Bme18I | GGWCC | 3 cut(s) | 4576, 5139, 5285 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 6191 |
| BmeT110I | CYCGRG | 3 cut(s) | 167, 209, 443 |
| BmgBI | CACGTC | 1 cut(s) | 6278 |
| BmgT120I | GGNCC | 6 cut(s) | 487, 2038, 4576, 5076, 5139, 5285 |
| BmrFI | CCNGG | 7 cut(s) | 2095, 2726, 2756, 3170, 3806, 5058, 5745 |
| BmrI | ACTGGG | 1 cut(s) | 4958 |
| BmtI | GCTAGC | 2 cut(s) | 2031, 5357 |
| BmuI | ACTGGG | 1 cut(s) | 4958 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5646 |
| BpiI | GAAGAC | 6 cut(s) | 344, 1031, 1079, 3204, 4616, 4742 |
| Bpu10I | CCTNAGC | 9 cut(s) | 504, 1152, 1401, 1727, 2304, 2706, 2907, 3142, 5766 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1722 |
| Bpu14I | TTCGAA | 2 cut(s) | 5150, 5218 |
| BpuMI | CCSGG | 1 cut(s) | 3806 |
| Bsa29I | ATCGAT | 1 cut(s) | 5943 |
| BsaAI | YACGTR | 1 cut(s) | 4586 |
| BsaBI | GATNNNNATC | 4 cut(s) | 3661, 4050, 5814, 6286 |
| BsaHI | GRCGYC | 4 cut(s) | 48, 129, 761, 6262 |
| BsaI | GGTCTC | 2 cut(s) | 3028, 5954 |
| BsaJI | CCNNGG | 8 cut(s) | 40, 525, 3168, 4059, 5080, 5107, 5272, 5339 |
| BsaWI | WCCGGW | 2 cut(s) | 84, 3560 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1106, 1136, 1832, 1862, 4918, 4948 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 484, 720, 5612, 6215, 6272 |
| Bse21I | CCTNAGG | 1 cut(s) | 4755 |
| Bse3DI | GCAATG | 8 cut(s) | 1911, 2111, 2809, 2819, 3414, 4388, 4551, 4563 |
| Bse8I | GATNNNNATC | 4 cut(s) | 3661, 4050, 5814, 6286 |
| BseAI | TCCGGA | 1 cut(s) | 84 |
| BseBI | CCWGG | 6 cut(s) | 2095, 2726, 2756, 3170, 5058, 5745 |
| BseCI | ATCGAT | 1 cut(s) | 5943 |
| BseDI | CCNNGG | 8 cut(s) | 40, 525, 3168, 4059, 5080, 5107, 5272, 5339 |
| BseJI | GATNNNNATC | 4 cut(s) | 3661, 4050, 5814, 6286 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 484, 720, 5612, 6215, 6272 |
| BseMI | GCAATG | 8 cut(s) | 1911, 2111, 2809, 2819, 3414, 4388, 4551, 4563 |
| BseRI | GAGGAG | 9 cut(s) | 38, 155, 1943, 2321, 2489, 2509, 3091, 3770, 5029 |
| BseSI | GKGCMC | 5 cut(s) | 1641, 3501, 3682, 4888, 5607 |
| BsgI | GTGCAG | 4 cut(s) | 79, 293, 3216, 3461 |
| Bsh1236I | CGCG | 8 cut(s) | 42, 77, 224, 1227, 2472, 2601, 6240, 6250 |
| Bsh1285I | CGRYCG | 1 cut(s) | 5736 |
| BshNI | GGYRCC | 4 cut(s) | 4760, 4883, 5602, 6261 |
| BshVI | ATCGAT | 1 cut(s) | 5943 |
| BsiEI | CGRYCG | 1 cut(s) | 5736 |
| BsiHKAI | GWGCWC | 6 cut(s) | 105, 264, 1641, 2459, 3318, 3501 |
| BsiHKCI | CYCGRG | 3 cut(s) | 167, 209, 443 |
| BsiSI | CCGG | 4 cut(s) | 33, 85, 3561, 3805 |
| BslFI | GGGAC | 2 cut(s) | 1938, 5152 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 484, 720, 5612, 6215, 6272 |
| BsmBI | CGTCTC | 3 cut(s) | 19, 5123, 5311 |
| BsmFI | GGGAC | 2 cut(s) | 1938, 5152 |
| BsmI | GAATGC | 6 cut(s) | 475, 646, 1723, 3860, 4624, 6160 |
| Bso31I | GGTCTC | 2 cut(s) | 3028, 5954 |
| BsoBI | CYCGRG | 3 cut(s) | 167, 209, 443 |
| Bsp119I | TTCGAA | 2 cut(s) | 5150, 5218 |
| Bsp13I | TCCGGA | 1 cut(s) | 84 |
| Bsp1407I | TGTACA | 1 cut(s) | 1908 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1722 |
| Bsp68I | TCGCGA | 1 cut(s) | 2472 |
| BspDI | ATCGAT | 1 cut(s) | 5943 |
| BspEI | TCCGGA | 1 cut(s) | 84 |
| BspFNI | CGCG | 8 cut(s) | 42, 77, 224, 1227, 2472, 2601, 6240, 6250 |
| BspHI | TCATGA | 2 cut(s) | 1288, 1612 |
| BspMAI | CTGCAG | 6 cut(s) | 1018, 2056, 2433, 4468, 4981, 5956 |
| BspMI | ACCTGC | 5 cut(s) | 164, 1147, 2620, 4072, 6094 |
| BspOI | GCTAGC | 2 cut(s) | 2031, 5357 |
| BspPI | GGATC | 9 cut(s) | 2778, 2791, 4335, 4356, 4454, 5590, 5939, 6276, 6289 |
| BspQI | GCTCTTC | 3 cut(s) | 1857, 5490, 6087 |
| BspT104I | TTCGAA | 2 cut(s) | 5150, 5218 |
| BspT107I | GGYRCC | 4 cut(s) | 4760, 4883, 5602, 6261 |
| BspTI | CTTAAG | 2 cut(s) | 1805, 4312 |
| BspTNI | GGTCTC | 2 cut(s) | 3028, 5954 |
| BsrBI | CCGCTC | 2 cut(s) | 1382, 5363 |
| BsrDI | GCAATG | 8 cut(s) | 1911, 2111, 2809, 2819, 3414, 4388, 4551, 4563 |
| BsrGI | TGTACA | 1 cut(s) | 1908 |
| BssECI | CCNNGG | 8 cut(s) | 40, 525, 3168, 4059, 5080, 5107, 5272, 5339 |
| BssNAI | GTATAC | 1 cut(s) | 2514 |
| BssNI | GRCGYC | 4 cut(s) | 48, 129, 761, 6262 |
| BssT1I | CCWWGG | 5 cut(s) | 525, 4059, 5107, 5272, 5339 |
| Bst1107I | GTATAC | 1 cut(s) | 2514 |
| Bst2UI | CCWGG | 6 cut(s) | 2095, 2726, 2756, 3170, 5058, 5745 |
| BstACI | GRCGYC | 4 cut(s) | 48, 129, 761, 6262 |
| BstAFI | CTTAAG | 2 cut(s) | 1805, 4312 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1277, 2669, 2825 |
| BstAUI | TGTACA | 1 cut(s) | 1908 |
| BstBAI | YACGTR | 1 cut(s) | 4586 |
| BstBI | TTCGAA | 2 cut(s) | 5150, 5218 |
| BstDSI | CCRYGG | 2 cut(s) | 40, 5080 |
| BstFNI | CGCG | 8 cut(s) | 42, 77, 224, 1227, 2472, 2601, 6240, 6250 |
| BstH2I | RGCGCY | 2 cut(s) | 253, 6265 |
| BstHHI | GCGC | 9 cut(s) | 121, 226, 252, 783, 1227, 3228, 6242, 6250, 6264 |
| BstMCI | CGRYCG | 1 cut(s) | 5736 |
| BstNI | CCWGG | 6 cut(s) | 2095, 2726, 2756, 3170, 5058, 5745 |
| BstNSI | RCATGY | 8 cut(s) | 2375, 2887, 3951, 4228, 4311, 4478, 4739, 5162 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5646 |
| BstSCI | CCNGG | 7 cut(s) | 2093, 2724, 2754, 3168, 3804, 5056, 5743 |
| BstSFI | CTRYAG | 8 cut(s) | 1014, 2052, 2429, 2700, 3779, 4464, 4977, 5952 |
| BstSLI | GKGCMC | 5 cut(s) | 1641, 3501, 3682, 4888, 5607 |
| BstSNI | TACGTA | 1 cut(s) | 4586 |
| BstUI | CGCG | 8 cut(s) | 42, 77, 224, 1227, 2472, 2601, 6240, 6250 |
| BstV2I | GAAGAC | 6 cut(s) | 344, 1031, 1079, 3204, 4616, 4742 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2762 |
| BstZ17I | GTATAC | 1 cut(s) | 2514 |
| Bsu15I | ATCGAT | 1 cut(s) | 5943 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4755 |
| BsuI | GTATCC | 1 cut(s) | 5272 |
| BsuTUI | ATCGAT | 1 cut(s) | 5943 |
| BtgI | CCRYGG | 2 cut(s) | 40, 5080 |
| BtgZI | GCGATG | 3 cut(s) | 1242, 1833, 3235 |
| BtrI | CACGTC | 1 cut(s) | 6278 |
| BtsI | GCAGTG | 2 cut(s) | 1278, 3228 |
| BtsIMutI | CAGTG | 8 cut(s) | 1278, 3228, 3543, 4793, 4971, 5169, 5175, 5210 |
| BtuMI | TCGCGA | 1 cut(s) | 2472 |
| BveI | ACCTGC | 5 cut(s) | 164, 1147, 2620, 4072, 6094 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1468, 4513 |
| CciI | TCATGA | 2 cut(s) | 1288, 1612 |
| CfoI | GCGC | 9 cut(s) | 121, 226, 252, 783, 1227, 3228, 6242, 6250, 6264 |
| Cfr13I | GGNCC | 6 cut(s) | 487, 2038, 4576, 5076, 5139, 5285 |
| Cfr42I | CCGCGG | 1 cut(s) | 43 |
| ClaI | ATCGAT | 1 cut(s) | 5943 |
| CseI | GACGC | 5 cut(s) | 56, 83, 137, 1274, 3887 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 6028, 6063 |
| DinI | GGCGCC | 1 cut(s) | 6263 |
| DraI | TTTAAA | 2 cut(s) | 4248, 5409 |
| DraIII | CACNNNGTG | 1 cut(s) | 3716 |
| DriI | GACNNNNNGTC | 1 cut(s) | 6191 |
| EaeI | YGGCCR | 2 cut(s) | 34, 3510 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 6191 |
| EciI | GGCGGA | 3 cut(s) | 77, 524, 6166 |
| Ecl136II | GAGCTC | 2 cut(s) | 103, 262 |
| Eco105I | TACGTA | 1 cut(s) | 4586 |
| Eco130I | CCWWGG | 5 cut(s) | 525, 4059, 5107, 5272, 5339 |
| Eco147I | AGGCCT | 1 cut(s) | 6002 |
| Eco24I | GRGCYC | 3 cut(s) | 105, 264, 5640 |
| Eco31I | GGTCTC | 2 cut(s) | 3028, 5954 |
| Eco32I | GATATC | 2 cut(s) | 2752, 3630 |
| Eco47I | GGWCC | 3 cut(s) | 4576, 5139, 5285 |
| Eco53kI | GAGCTC | 2 cut(s) | 103, 262 |
| Eco81I | CCTNAGG | 1 cut(s) | 4755 |
| Eco88I | CYCGRG | 3 cut(s) | 167, 209, 443 |
| EcoICRI | GAGCTC | 2 cut(s) | 103, 262 |
| EcoO109I | RGGNCCY | 3 cut(s) | 4576, 5076, 5139 |
| EcoRI | GAATTC | 2 cut(s) | 1126, 5851 |
| EcoRII | CCWGG | 6 cut(s) | 2093, 2724, 2754, 3168, 5056, 5743 |
| EcoRV | GATATC | 2 cut(s) | 2752, 3630 |
| EcoT14I | CCWWGG | 5 cut(s) | 525, 4059, 5107, 5272, 5339 |
| EcoT22I | ATGCAT | 1 cut(s) | 4960 |
| EcoT38I | GRGCYC | 3 cut(s) | 105, 264, 5640 |
| EgeI | GGCGCC | 1 cut(s) | 6263 |
| EheI | GGCGCC | 1 cut(s) | 6263 |
| ErhI | CCWWGG | 5 cut(s) | 525, 4059, 5107, 5272, 5339 |
| Esp3I | CGTCTC | 3 cut(s) | 19, 5123, 5311 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 3185, 3217, 3696, 3728, 4734, 4766 |
| FaqI | GGGAC | 2 cut(s) | 1938, 5152 |
| FauI | CCCGC | 3 cut(s) | 889, 4897, 5368 |
| FbaI | TGATCA | 2 cut(s) | 915, 1416 |
| FblI | GTMKAC | 1 cut(s) | 2513 |
| FriOI | GRGCYC | 3 cut(s) | 105, 264, 5640 |
| GlaI | GCGC | 9 cut(s) | 120, 225, 251, 782, 1226, 3227, 6241, 6249, 6263 |
| HaeII | RGCGCY | 2 cut(s) | 253, 6265 |
| HapII | CCGG | 4 cut(s) | 33, 85, 3561, 3805 |
| HgaI | GACGC | 5 cut(s) | 56, 83, 137, 1274, 3887 |
| HhaI | GCGC | 9 cut(s) | 121, 226, 252, 783, 1227, 3228, 6242, 6250, 6264 |
| Hin1I | GRCGYC | 4 cut(s) | 48, 129, 761, 6262 |
| Hin6I | GCGC | 9 cut(s) | 119, 224, 250, 781, 1225, 3226, 6240, 6248, 6262 |
| HinP1I | GCGC | 9 cut(s) | 119, 224, 250, 781, 1225, 3226, 6240, 6248, 6262 |
| HincII | GTYRAC | 6 cut(s) | 613, 2257, 2325, 3288, 5531, 5762 |
| HindII | GTYRAC | 6 cut(s) | 613, 2257, 2325, 3288, 5531, 5762 |
| HindIII | AAGCTT | 7 cut(s) | 626, 671, 848, 2960, 3303, 5229, 5403 |
| HpaII | CCGG | 4 cut(s) | 33, 85, 3561, 3805 |
| Hpy99I | CGWCG | 9 cut(s) | 23, 50, 77, 131, 248, 766, 841, 3603, 4391 |
| HpyCH4IV | ACGT | 7 cut(s) | 761, 1507, 3601, 4182, 4585, 5224, 6277 |
| HpySE526I | ACGT | 7 cut(s) | 761, 1507, 3601, 4182, 4585, 5224, 6277 |
| Hsp92I | GRCGYC | 4 cut(s) | 48, 129, 761, 6262 |
| HspAI | GCGC | 9 cut(s) | 119, 224, 250, 781, 1225, 3226, 6240, 6248, 6262 |
| KasI | GGCGCC | 1 cut(s) | 6261 |
| KflI | GGGWCCC | 1 cut(s) | 5139 |
| Kpn2I | TCCGGA | 1 cut(s) | 84 |
| KpnI | GGTACC | 1 cut(s) | 4764 |
| Ksp22I | TGATCA | 2 cut(s) | 915, 1416 |
| KspI | CCGCGG | 1 cut(s) | 43 |
| LguI | GCTCTTC | 3 cut(s) | 1857, 5490, 6087 |
| MaeII | ACGT | 7 cut(s) | 761, 1507, 3601, 4182, 4585, 5224, 6277 |
| MbiI | CCGCTC | 2 cut(s) | 1382, 5363 |
| MfeI | CAATTG | 1 cut(s) | 3506 |
| MluI | ACGCGT | 1 cut(s) | 75 |
| Mly113I | GGCGCC | 1 cut(s) | 6262 |
| MlyI | GAGTC | 9 cut(s) | 221, 949, 1093, 1246, 1430, 1741, 2297, 4504, 5255 |
| MmeI | TCCRAC | 6 cut(s) | 42, 3249, 3844, 4407, 5972, 6227 |
| Mph1103I | ATGCAT | 1 cut(s) | 4960 |
| MroI | TCCGGA | 1 cut(s) | 84 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1887 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1506, 1617, 1818, 3965 |
| MspA1I | CMGCKG | 5 cut(s) | 42, 464, 2489, 3487, 5912 |
| MspCI | CTTAAG | 2 cut(s) | 1805, 4312 |
| MspI | CCGG | 4 cut(s) | 33, 85, 3561, 3805 |
| MspR9I | CCNGG | 7 cut(s) | 2095, 2726, 2756, 3170, 3806, 5058, 5745 |
| MunI | CAATTG | 1 cut(s) | 3506 |
| Mva1269I | GAATGC | 6 cut(s) | 475, 646, 1723, 3860, 4624, 6160 |
| MvaI | CCWGG | 6 cut(s) | 2095, 2726, 2756, 3170, 5058, 5745 |
| MvnI | CGCG | 8 cut(s) | 42, 77, 224, 1227, 2472, 2601, 6240, 6250 |
| NarI | GGCGCC | 1 cut(s) | 6262 |
| NciI | CCSGG | 1 cut(s) | 3806 |
| NheI | GCTAGC | 2 cut(s) | 2027, 5353 |
| NmeAIII | GCCGAG | 3 cut(s) | 172, 3538, 3745 |
| NmuCI | GTSAC | 9 cut(s) | 424, 757, 1508, 1555, 2126, 3899, 4966, 5669, 6193 |
| NruI | TCGCGA | 1 cut(s) | 2472 |
| NsiI | ATGCAT | 1 cut(s) | 4960 |
| NspI | RCATGY | 8 cut(s) | 2375, 2887, 3951, 4228, 4311, 4478, 4739, 5162 |
| NspV | TTCGAA | 2 cut(s) | 5150, 5218 |
| PaeI | GCATGC | 2 cut(s) | 4478, 4739 |
| PaeR7I | CTCGAG | 3 cut(s) | 167, 209, 443 |
| PagI | TCATGA | 2 cut(s) | 1288, 1612 |
| PceI | AGGCCT | 1 cut(s) | 6002 |
| PciI | ACATGT | 2 cut(s) | 2883, 4224 |
| PciSI | GCTCTTC | 3 cut(s) | 1857, 5490, 6087 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 18, 3721 |
| PctI | GAATGC | 6 cut(s) | 475, 646, 1723, 3860, 4624, 6160 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1887 |
| PflFI | GACNNNGTC | 1 cut(s) | 110 |
| PfoI | TCCNGGA | 1 cut(s) | 3804 |
| Ple19I | CGATCG | 1 cut(s) | 5736 |
| PleI | GAGTC | 9 cut(s) | 220, 948, 1092, 1245, 1430, 1740, 2296, 4504, 5255 |
| PluTI | GGCGCC | 1 cut(s) | 6265 |
| PpsI | GAGTC | 9 cut(s) | 220, 948, 1092, 1245, 1430, 1740, 2296, 4504, 5255 |
| Ppu21I | YACGTR | 1 cut(s) | 4586 |
| PpuMI | RGGWCCY | 2 cut(s) | 4576, 5139 |
| PscI | ACATGT | 2 cut(s) | 2883, 4224 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5646 |
| PshBI | ATTAAT | 1 cut(s) | 309 |
| Psp124BI | GAGCTC | 2 cut(s) | 105, 264 |
| Psp5II | RGGWCCY | 2 cut(s) | 4576, 5139 |
| Psp6I | CCWGG | 6 cut(s) | 2093, 2724, 2754, 3168, 5056, 5743 |
| PspGI | CCWGG | 6 cut(s) | 2093, 2724, 2754, 3168, 5056, 5743 |
| PspPI | GGNCC | 6 cut(s) | 487, 2038, 4576, 5076, 5139, 5285 |
| PspPPI | RGGWCCY | 2 cut(s) | 4576, 5139 |
| PspXI | VCTCGAGB | 2 cut(s) | 167, 209 |
| PstI | CTGCAG | 6 cut(s) | 1018, 2056, 2433, 4468, 4981, 5956 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1468, 4513 |
| PsyI | GACNNNGTC | 1 cut(s) | 110 |
| PvuI | CGATCG | 1 cut(s) | 5736 |
| PvuII | CAGCTG | 4 cut(s) | 464, 2489, 3487, 5912 |
| RruI | TCGCGA | 1 cut(s) | 2472 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1506, 1617, 1818, 3965 |
| SacI | GAGCTC | 2 cut(s) | 105, 264 |
| SacII | CCGCGG | 1 cut(s) | 43 |
| SapI | GCTCTTC | 3 cut(s) | 1857, 5490, 6087 |
| Sau96I | GGNCC | 6 cut(s) | 487, 2038, 4576, 5076, 5139, 5285 |
| SbfI | CCTGCAGG | 1 cut(s) | 4468 |
| ScaI | AGTACT | 2 cut(s) | 3474, 6070 |
| SchI | GAGTC | 9 cut(s) | 221, 949, 1093, 1246, 1430, 1741, 2297, 4504, 5255 |
| ScrFI | CCNGG | 7 cut(s) | 2095, 2726, 2756, 3170, 3806, 5058, 5745 |
| SdaI | CCTGCAGG | 1 cut(s) | 4468 |
| SfcI | CTRYAG | 8 cut(s) | 1014, 2052, 2429, 2700, 3779, 4464, 4977, 5952 |
| SfoI | GGCGCC | 1 cut(s) | 6263 |
| Sfr274I | CTCGAG | 3 cut(s) | 167, 209, 443 |
| Sfr303I | CCGCGG | 1 cut(s) | 43 |
| SfuI | TTCGAA | 2 cut(s) | 5150, 5218 |
| SgrBI | CCGCGG | 1 cut(s) | 43 |
| SinI | GGWCC | 3 cut(s) | 4576, 5139, 5285 |
| SlaI | CTCGAG | 3 cut(s) | 167, 209, 443 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1506, 1617, 1818, 3965 |
| SnaBI | TACGTA | 1 cut(s) | 4586 |
| SpeI | ACTAGT | 1 cut(s) | 6071 |
| SphI | GCATGC | 2 cut(s) | 4478, 4739 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 4468 |
| SseBI | AGGCCT | 1 cut(s) | 6002 |
| SspDI | GGCGCC | 1 cut(s) | 6261 |
| SspI | AATATT | 1 cut(s) | 2152 |
| SstI | GAGCTC | 2 cut(s) | 105, 264 |
| StuI | AGGCCT | 1 cut(s) | 6002 |
| StyD4I | CCNGG | 7 cut(s) | 2093, 2724, 2754, 3168, 3804, 5056, 5743 |
| StyI | CCWWGG | 5 cut(s) | 525, 4059, 5107, 5272, 5339 |
| TaiI | ACGT | 7 cut(s) | 764, 1510, 3604, 4185, 4588, 5227, 6280 |
| TaqII | GACCGA | 1 cut(s) | 5978 |
| TatI | WGTACW | 6 cut(s) | 536, 1908, 3444, 3472, 6032, 6068 |
| TauI | GCSGC | 7 cut(s) | 45, 53, 134, 3080, 3167, 5297, 6262 |
| TscAI | CASTG | 8 cut(s) | 1278, 3235, 3550, 4800, 4971, 5176, 5182, 5217 |
| TseFI | GTSAC | 9 cut(s) | 424, 757, 1508, 1555, 2126, 3899, 4966, 5669, 6193 |
| Tsp45I | GTSAC | 9 cut(s) | 424, 757, 1508, 1555, 2126, 3899, 4966, 5669, 6193 |
| TspGWI | ACGGA | 2 cut(s) | 703, 5147 |
| TspRI | CASTG | 8 cut(s) | 1278, 3235, 3550, 4800, 4971, 5176, 5182, 5217 |
| Tth111I | GACNNNGTC | 1 cut(s) | 110 |
| Vha464I | CTTAAG | 2 cut(s) | 1805, 4312 |
| VneI | GTGCAC | 2 cut(s) | 1637, 3497 |
| VpaK11BI | GGWCC | 3 cut(s) | 4576, 5139, 5285 |
| VspI | ATTAAT | 1 cut(s) | 309 |
| XapI | RAATTY | 9 cut(s) | 692, 1126, 2132, 2186, 2848, 2939, 3117, 4503, 5851 |
| XbaI | TCTAGA | 2 cut(s) | 1832, 2989 |
| XceI | RCATGY | 8 cut(s) | 2375, 2887, 3951, 4228, 4311, 4478, 4739, 5162 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 5279 |
| XhoI | CTCGAG | 3 cut(s) | 167, 209, 443 |
| XmiI | GTMKAC | 1 cut(s) | 2513 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1887 |
| ZraI | GACGTC | 1 cut(s) | 762 |
| ZrmI | AGTACT | 2 cut(s) | 3474, 6070 |
| Zsp2I | ATGCAT | 1 cut(s) | 4960 |