Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017996.1

Orthogroup ID

OG0003251

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1179

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017996.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 337 bp

gtggttgaattcattagaatctactgacatggctgaggttgatcgtgcggtggtgccgaagattcctgttggtgtttcaggaacagcactagcagcttcccttttacgcaacgggtggagtcttgcaaaaatgtatgcgaagtaccaagaggcggtcgatgctttgcgtcatgagcagttgggaaggaaggaatctgaggcaatcttgcaacgggttctatatgaaatagaagagaaaggtgaagtcatcatggatgaaagaggtattttcttacaaatcaattctatcttgtttgtggtatattcttattttggaagcttcatgttttatcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216

Pfam Domains

Protein Families

TPR_MLP1_2

Protein Analysis

111

Amino Acids

12.65

Weight (kDa)

5.13

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79280 AT1G79280 AT1G79280
fragaria_vesca	FvH4_3g13850 FvH4_3g13850
malus_domestica	MD05G1240600.v1.1 MD10G1218600.v1.1 MD10G1218800.v1.1 MD10G1219000.v1.1
prunus_persica	Prupe.4G125000_v2.0.a1 Prupe.4G125000_v2.0.a1 Prupe.4G125000_v2.0.a1
pyrus_communis	pycom05g21650 pycom05g21660 pycom05g21670 pycom05g21680 pycom09g00980 pycom10g18440 pycom10g18450
rosa_chinensis	RchiOBHm_Chr5g0023031
rosa_laevigata	RLG00000032692 RLG00000032694
rosa_multiflora	Rmu_co8489363.1_g000001 Rmu_sc0002675.1_g000017 Rmu_sc0003955.1_g000002 Rmu_sc0015264.1_g000001 Rmu_sc0015264.1_g000002 Rmu_sc0017996.1_g000001 Rmu_sc0029290.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056280 Rroxscaffold_7G00176540
rosa_rugosa	Rorug05G0076700
rosa_samantha	Rh5AG163000 Rh5BG162200 Rh5CG176900 Rh5DG163500
rosa_wichuraiana	Rw5G014700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	2 cut(s)	48, 153
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	8
AluBI	AGCT	2 cut(s)	96, 319
AluI	AGCT	2 cut(s)	96, 319
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	2 cut(s)	25, 187
BseXI	GCAGC	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	41
BspACI	CCGC	2 cut(s)	48, 153
BspCNI	CTCAG	2 cut(s)	26, 188
BspHI	TCATGA	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	53
BssMI	GATC	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	34, 196
BstF5I	GGATG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	41
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 159, 173
BstV1I	GCAGC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	260
CciI	TCATGA	1 cut(s)	170
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	4 cut(s)	29, 171, 251, 323
CviJI	RGCY	3 cut(s)	33, 96, 319
CviKI_1	RGCY	3 cut(s)	33, 96, 319
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	2 cut(s)	34, 196
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	8
FaeI	CATG	4 cut(s)	32, 174, 254, 326
FaiI	YATR	8 cut(s)	30, 136, 172, 221, 223, 252, 302, 324
FatI	CATG	4 cut(s)	28, 170, 250, 322
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	94
HgaI	GACGC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	32, 174, 254, 326
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	4 cut(s)	18, 62, 119, 192
HphI	GGTGA	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	79, 171
HpyAV	CCTTC	2 cut(s)	178, 182
HpyCH4V	TGCA	2 cut(s)	126, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 159, 173
HpyF3I	CTNAG	2 cut(s)	34, 196
Hsp92II	CATG	4 cut(s)	32, 174, 254, 326
Kzo9I	GATC	1 cut(s)	41
LpnPI	CCDG	2 cut(s)	64, 79
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	90
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	2 cut(s)	71, 243
MluCI	AATT	2 cut(s)	8, 281
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	4 cut(s)	29, 143, 191, 255
MwoI	GCNNNNNNNGC	3 cut(s)	93, 159, 173
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	4 cut(s)	32, 174, 254, 326
NlaIV	GGNNCC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	18, 62, 192
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	128
SetI	ASST	5 cut(s)	40, 98, 242, 266, 321
SfaNI	GCATC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	8, 281
SsiI	CCGC	2 cut(s)	48, 153
SspMI	CTAG	1 cut(s)	90
TaqI	TCGA	1 cut(s)	157
TasI	AATT	2 cut(s)	8, 281
TfiI	GAWTC	3 cut(s)	18, 62, 192
TseI	GCWGC	1 cut(s)	93
TspDTI	ATGAA	3 cut(s)	238, 271, 311
XapI	RAATTY	1 cut(s)	8
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.