Rmu_sc0003955.1_g000002

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003955.1
OG0003251
Physical Location & Seq
Forward (+)
6500 .. 7259
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003955.1_g000002.1.cds

Sequence Viewer

Length: 492 bp
atgccgcttttcgtctccgacgaggagttctccggccaccgagacgacgtcgcttgggtggcggagaaggccgacgcgtttatccggaacctctacacggagcttgacatcgttaaggcgcagaacgacgccgcttcgatcaccgccgagcagacctgctctctcctcgagcagaagtacctctccctctccgatgaacactccaagctcgagtccgaactcgcgcagctcaagtcctcgttcgacgagcgcctctccgagctcgccgaagtgcagtctcagaagtaccagctcaatttacaatccattaataaggatagtgagatagagatgttgaagacggaggtgtcagagctgcacaaatcaaagaggcagttaatggagatagtggagcaaaaggatgaagatattagtgcaaagaattgcaccatccagtcttatctcgagaagattgtcaagtcggctgagaatgctgcccagagggaggcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

163

Amino Acids

18.59

Weight (kDa)

4.63

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 164
AccII CGCG 2 cut(s) 77, 224
AccIII TCCGGA 1 cut(s) 84
AciI CCGC 4 cut(s) 5, 62, 132, 144
AcoI YGGCCR 1 cut(s) 34
AcyI GRCGYC 2 cut(s) 48, 129
AfaI GTAC 2 cut(s) 179, 287
AfiI CCNNNNNNNGG 2 cut(s) 97, 484
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 6 cut(s) 103, 208, 229, 262, 292, 355
AluI AGCT 6 cut(s) 103, 208, 229, 262, 292, 355
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 3 cut(s) 19, 36, 282
Ama87I CYCGRG 3 cut(s) 167, 209, 443
Aor13HI TCCGGA 1 cut(s) 84
AoxI GGCC 3 cut(s) 34, 69, 486
ApeKI GCWGC 3 cut(s) 226, 355, 473
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 3 cut(s) 121, 226, 252
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 3 cut(s) 167, 209, 443
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 238, 342, 460
BccI CCATC 1 cut(s) 437
BcoDI GTCTC 3 cut(s) 19, 36, 282
BfoI RGCGCY 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 5 cut(s) 5, 132, 227, 356, 474
BlsI GCNGC 5 cut(s) 6, 133, 228, 357, 475
BmeT110I CYCGRG 3 cut(s) 167, 209, 443
BmiI GGNNCC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 4 cut(s) 14, 46, 239, 271
BpuEI CTTGAG 1 cut(s) 215
BsaHI GRCGYC 2 cut(s) 48, 129
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 484
Bse1I ACTGG 1 cut(s) 433
BseAI TCCGGA 1 cut(s) 84
BseGI GGATG 2 cut(s) 406, 429
BseLI CCNNNNNNNGG 2 cut(s) 97, 484
BseMII CTCAG 2 cut(s) 293, 456
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 2 cut(s) 38, 155
BseXI GCAGC 3 cut(s) 238, 342, 460
BsgI GTGCAG 2 cut(s) 293, 341
Bsh1236I CGCG 2 cut(s) 77, 224
BshFI GGCC 3 cut(s) 36, 71, 488
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 3 cut(s) 167, 209, 443
BsiSI CCGG 2 cut(s) 33, 85
BslI CCNNNNNNNGG 2 cut(s) 97, 484
BsmAI GTCTC 3 cut(s) 19, 36, 282
BsmBI CGTCTC 2 cut(s) 19, 36
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 3 cut(s) 36, 71, 488
BsoBI CYCGRG 3 cut(s) 167, 209, 443
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 4 cut(s) 5, 62, 132, 144
BspANI GGCC 3 cut(s) 36, 71, 488
BspCNI CTCAG 2 cut(s) 292, 457
BspEI TCCGGA 1 cut(s) 84
BspFNI CGCG 2 cut(s) 77, 224
BspLI GGNNCC 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 433
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 2 cut(s) 48, 129
BstACI GRCGYC 2 cut(s) 48, 129
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 279, 465
BstF5I GGATG 2 cut(s) 406, 429
BstFNI CGCG 2 cut(s) 77, 224
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 3 cut(s) 121, 226, 252
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 3 cut(s) 19, 36, 282
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 470
BstUI CGCG 2 cut(s) 77, 224
BstV1I GCAGC 3 cut(s) 238, 342, 460
BstV2I GAAGAC 1 cut(s) 344
BsuRI GGCC 3 cut(s) 36, 71, 488
BtsCI GGATG 2 cut(s) 406, 429
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 264
CfoI GCGC 3 cut(s) 121, 226, 252
CseI GACGC 2 cut(s) 83, 137
Csp6I GTAC 2 cut(s) 178, 286
CviQI GTAC 2 cut(s) 178, 286
DdeI CTNAG 2 cut(s) 279, 465
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 34
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 262
Eco147I AGGCCT 1 cut(s) 488
Eco24I GRGCYC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 262
Eco88I CYCGRG 3 cut(s) 167, 209, 443
EcoICRI GAGCTC 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 264
Esp3I CGTCTC 2 cut(s) 19, 36
Fnu4HI GCNGC 5 cut(s) 5, 132, 227, 356, 474
FokI GGATG 2 cut(s) 413, 416
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 5 cut(s) 5, 132, 227, 356, 474
GlaI GCGC 3 cut(s) 120, 225, 251
GluI GCNGC 5 cut(s) 5, 132, 227, 356, 474
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 3 cut(s) 36, 71, 488
HapII CCGG 2 cut(s) 33, 85
HgaI GACGC 2 cut(s) 83, 137
HhaI GCGC 3 cut(s) 121, 226, 252
Hin1I GRCGYC 2 cut(s) 48, 129
Hin6I GCGC 3 cut(s) 119, 224, 250
HinP1I GCGC 3 cut(s) 119, 224, 250
HinfI GANTC 1 cut(s) 212
HpaII CCGG 2 cut(s) 33, 85
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 6 cut(s) 19, 193, 217, 259, 282, 352
Hpy188III TCNNGA 3 cut(s) 85, 443, 445
Hpy99I CGWCG 6 cut(s) 23, 50, 53, 77, 131, 248
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 4 cut(s) 274, 358, 416, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 470
HpyF3I CTNAG 2 cut(s) 279, 465
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 2 cut(s) 48, 129
HspAI GCGC 3 cut(s) 119, 224, 250
Kpn2I TCCGGA 1 cut(s) 84
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 100, 391
LpnPI CCDG 5 cut(s) 46, 98, 169, 302, 446
Lsp1109I GCAGC 3 cut(s) 238, 342, 460
MaeII ACGT 1 cut(s) 48
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 349, 416, 460
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 2 cut(s) 295, 421
MluI ACGCGT 1 cut(s) 75
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 42
MroI TCCGGA 1 cut(s) 84
MseI TTAA 3 cut(s) 114, 309, 377
MspI CCGG 2 cut(s) 33, 85
Mva1269I GAATGC 1 cut(s) 475
MvnI CGCG 2 cut(s) 77, 224
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 470
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 172
PaeR7I CTCGAG 3 cut(s) 167, 209, 443
PceI AGGCCT 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 475
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 5 cut(s) 6, 133, 228, 357, 475
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PshBI ATTAAT 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 89
PspXI VCTCGAGB 2 cut(s) 167, 209
PsyI GACNNNGTC 1 cut(s) 47
RsaI GTAC 2 cut(s) 179, 287
RsaNI GTAC 2 cut(s) 178, 286
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 3 cut(s) 114, 309, 377
SatI GCNGC 5 cut(s) 5, 132, 227, 356, 474
Sau3AI GATC 1 cut(s) 138
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 264
Sfr274I CTCGAG 3 cut(s) 167, 209, 443
SlaI CTCGAG 3 cut(s) 167, 209, 443
SmlI CTYRAG 4 cut(s) 167, 209, 230, 443
SmoI CTYRAG 4 cut(s) 167, 209, 230, 443
Sse9I AATT 2 cut(s) 295, 421
SseBI AGGCCT 1 cut(s) 488
SsiI CCGC 4 cut(s) 5, 62, 132, 144
SstI GAGCTC 1 cut(s) 264
StuI AGGCCT 1 cut(s) 488
TaiI ACGT 1 cut(s) 51
TaqI TCGA 5 cut(s) 137, 168, 210, 243, 444
TasI AATT 2 cut(s) 295, 421
TauI GCSGC 2 cut(s) 7, 134
Tru1I TTAA 3 cut(s) 114, 309, 377
Tru9I TTAA 3 cut(s) 114, 309, 377
TseI GCWGC 3 cut(s) 226, 355, 473
TspDTI ATGAA 2 cut(s) 210, 417
TspGWI ACGGA 2 cut(s) 113, 356
Tth111I GACNNNGTC 1 cut(s) 47
VspI ATTAAT 1 cut(s) 309
XhoI CTCGAG 3 cut(s) 167, 209, 443
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.