Rh5DG163500

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003251
Physical Location & Seq
Reverse (-)
17062452 .. 17082455
20004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG163500.1

Sequence Viewer

Length: 4698 bp
ATGCCGCTCTTCGTCTCCGACGAGGAGTTCTCCGGCCACCGAGACGACGTCGCTTGGGTGGCGGAGAAGGCCGACGCGTTTATCCGGAACCTCTACACGGAGCTTGACACCGTCAAGGCGCAGAACGACGCCGCTTCGATCACCGCCGAGCAGACCTGCTCTCTCCTCGAGCAGAAGTACCTCTCCCTCTCCGATGAACACTCCAAGCTCGAGTCCGAACTCGCGCAGCTCAAGTCCTCGTTCGACGAGCGCCTCTCCGAGCTCGCCGAAGTGCAGTCTCAGAAGTACCAGCTCAATTTACAATCCATTAATAAAGATAGTGAGATAGAGATGTTGAAGACGGAGGTGTCAGAGCTGCACAAATCAAAGAGGCAGTTAATGGAGATAGTGGAGCAAAAGGATGAAGATATTAGTGCAAAGAATTGCACCATCCAGTCTTATCTCGAGAAGATTGTCAAGTCGGCTGAGAATGCTGCCCAGAGGGAGGCCGGATTAAGTGAAGCTGAGGCAGAGTTAGCACGCACCAAGGATTCATGCACTCATCTTTCACAGGAGAAAGAACTTATCGAGAGGCATAATGTCTGGCTTAATGATGAGTTAGCAGCCAAAGTTGACAGTCTCATTAAGCTGCGTAGAACGCATGCCGATGTTGAGGCAGAGATGTCTTTTAAGCTTTCAGATGTTGAACGGAAATTCAATGACTGTTCTAGCTCCTTAAATTGGAACAAGGAAAGAGTGAGGGAACTAGAAGCAAAGCTGACATCCTTGCAGGAGGAACTACGCTTATCGAAAGATACTGCAGCAGCTAATGAAGAGAGATCAAATGCCGAACTCTCAACGACAAATAAGCTTGTTGAACTATATAAGGAAAGTTCAGAGGAATGGTCCAAAAAGGCGGGAGAGCTTGAGGGCGTGATCAAAGCTCTGGAGACGCATTTGAGTCAAGTTGAAAATGATTACAAGGAGAGACTTGAAGGGGAAGTGTCTGCAAGAAATCAATTTGAAAAGGAGGCTGCAGATCTGAAGACAAAACTTGAGAAGTGCGAAGCAGAAATTGAAACTAGCAGGAAAGCAAATGAGCTGAGTCTTCTCCCACTTAATAGTTCTGGTCAGGAAATGTGGTTGAATTCATTAGAATCTACTGACATGGCTGAGGTTGATCGTGCGGTGGTGCCGAAGATTCCTGTTGGTGTTTCAGGAACAGCATTAGCAGCGTCCCTTTTACGCGACGGGTGGAGTCTTGCAAAAATGTATGCGAAGTACCAAGAGGCGGTCGATGCCTTGCGTCATGAGCAGTTGGGAAGGAAGGAATCTGAGGCAATCTTGCAACGGGTTCTATATGAAATAGAAGAGAAAGCTGAAGTCATCATGGATGAAAGAGTGGAACATGAGAGAATGGCCGAGGCATATTCTATGATCAACCAGAAGTTGCAGGACTCAGTTTCTGAACAAGAATACTTAGAGAGAATGATCACGGAGTTGAAGGCTGACATAAGGAGGCATGAACGTGACTACTCCTTTGCTCAAAAAGAGATTGCTGATCTTCAGAGAGAGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATCTGATGCTGAAAAAGTCATATCTGAACATCTTTTGACCTTCAAGGACATAAATGGTCTGGTTCAGCAGAATGCCCAGCTCAGGAGTCTTGTTCGCAATCTTTCTGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACTGAGGAAGCTGCTTCTAGAGTTGAGGCTGTATTACAAAGAGCTGAAGAGCAAGGGCAAATGATTGAATCCCTTCACACCTCTGTCGCAATGTACAAAAGGTTGTATGAAGAGGAGCATAAACTTCGTTCGTCTGGTCCCCATTTAATAGAGGCTGCTCCAGAGGAAAGAAGAAGTGATGTTAGGCATCTACTTGAGAGTTCTCAGGAAGCTAGCAGAAAGGCCCAAGACCATGCTGCAGTACGAGTGAAATGTCTGGAAGAAGATCTAGCGAAGATCAGGAGTGAGATAATATCATTGCGGTCAGAGCGTGACAAATTCGCTTCTGAAGCGAATATTGCTAGAGAGAAACTTGAGAGCTTTATGAAAGAATTTGAGCTTCAGAGGAACGAAACAAATGGTGTATTAGCAAGGAACATTGAGTTCTCTCAGTTAATAGTTGACTACCAGCGGAAGCTGCGTGAAGGTTCTGAGTCCGTGCAAACTGCTGAGGAGCTTTCTAGGAAGTTGACTATGGAGGTGTCTCTTTTGAAGCAAGAGAAGGAAATGCTGCAACATGCTGAGAAGAGAGCTTCGGATGAAGTTCATAATTTGTCAGAGAGGGTTTATAGACTGCAGGCTAGTTTGGACACTATTCAGAGTACCCAGCAAGTTCGCGAGGAGGCAAGAGCTGCCGAGAGGAGAAAACAAGAAGAGTATACAGAACAAAAAGAGAGGGAGTGGGCTGATGCTAAAAGAGAATTGCAAGAAGAGAAAAATAATGCTCTCACTCTTGCACTTGACCGCGATCAGACCATAAAAAATGCCGTCAAACAGGTTGAAGAAATGAGAAAAGATTTGTCTAATGCACTTCATGCTGCTGCATCTGCTGAGAGTAGAGCTGCTGTAGCTGAGGCCAGACTGTCTGATCTGGAGAAAAAGAGTTCATCCTCAGATATCCAGGTTGTTGAGATTGACGGTGGGAGTGGATCTGCTTCTTTGACAGGCAATGAGGCTATGTTGGCATTACGTGCTGCAAAGGATGAGATTAAGAATTTGAAAGATGAAATGCAGGCTACTAAAGATCACATGCTACAGTATAAGAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGGCTGAAAAACTGAAGAAATCTCGAGATGCTGAATTACTCTCTTTGAGAGAGAGGGTCTCTGAACTTGAAAATGAGATTATGTTGAAGTCCCAAGAAGTGGCTTCTGCAGCAGCAGGGAAGGAAGAAGCTCTATTCTCTGCTTTAGCAGAAATTTCAAGCCTAAAGGAAGAAACCACAGCAAAAACTTCTCAAACTGCTGCCCTGGAGATTCAGGTTTCTACTTTGAAGGAAGACTTGGAGAAAGAACATCAGCGATGGCGCACTGCACAGGCTAATTATGAAAGACAGGTCATCCTTCAGTCAGAGACAATACAGGAGTTGACTAAAACATCACAAGCTTTGGCTGTGCTTCAGCAGGAAGCATCAGAGTTGCGTAAATTGGATGATGCACTCAAAAGTGAAAATGATGAACTAAAGTCCAGGTGGGAAGTTGATAAGGCAATGTTAGAGGAATCCGCTAGTATTGCTGAGAAGAAGTACAATGAAATCAATGAACAGAATAAAATACTGCATGGTCAACTGGAGGCTGTGCACATTCAATTGGCCGAGAGAGATCGTGGTTCATTTGGAACAACTTCTGGAAGCACTGGAGCAGATACTTCAGGTGATGCTGGTTTACAAACTGTGATAAGTTATCTTCGACGTACAAAAGAGATTGCAGAGACAGAGATATCCTTATTGAAACAAGAAAAACTAAGATTGCAATCACAACTTGAGAGTGCCCTCAAGGCTTCAGAAACAGCCCAAGCATCACTTCGTGCTGAGCGTGCAAGTTCAAGGTCAATGTTGTTCTCAGAGGAGGAACTAAAATCCTTACAACTACAGGTTAGAGAAATAAACTTGCTCCGCGAAAGTAATATCCAACTGAGAGAAGAAAATAAGCACAATTTTGAGGAATGCCAGAAATTGCATGAAATATCACAAAAGGCTAGTGTTGAGCGTCACAACCTAGAGAGGCTGTTAAGGGATAGACAGATTGAGGTGGAGGCATGTAAAAAAGACATTGAAATGCAAAAGATGGAGAAAGATCACTTGGAAAAGAGGCTCAGTGAGTTACTTGAAAGGTATAGAAATATAGATGTTGAAGATTATGATCGCACAAAGGCTGAACATCAGCAGATGCAGGTAACATTGAAGGAGAAGGATTCTCATATAGAAGAAGTCAAGAAACTTCTTTCGGAGAAGCTGGAGATTGTTTTGTCTTTAGAAAAAGATCTTGCAAACTTCAGATCGGAACTGACTGAGAGGGATAGGAGGATAAATGACATGTTGCCAGCAGAGGCAATTTTAAAATCAGATGTGGAGAAGCAAAGAAGGATTGGCCTTCAGTTTAAGAGGAAGTATGAGACATGCTTAAAGGAAAAGGAGGATCTTCAAAGACAAAAGGAGGATCTTCAAAGGCAAAAGGACGACCTTCAAAGGCAATGCGACGACCTTCAAAGGCAAAGGGATGACCTTATAAGGCAGTTGGAGGAAAAACAAGCGAAACGATCTTCTGGTGATCCTGCTGGGGAGCATGCCCTTAAAGAAGAGAGAGACCAAAAAATTCAGACACTGCAAAAAATGATGGAGAGGCAGAAAGAGGCAATGGAGAGGCAGAAAGAGGACCTACGAAATGAGAAAGCAAACCGCAAGAAGACTGAGCATGCTTTATTGGATTCTCTTAATAAAATTGAGCAGGTTTTTTTTGTGTGTTTCACACTTTTTAAACTTAACCATTTGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

1565

Amino Acids

180.24

Weight (kDa)

5.21

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoprot-TPR PF25481 170 - 249 1e-26 Nucleoprotein TPR-like domain
TPR PF25785 491 - 593 3.6e-29 Nucleoprotein TPR-like domain
TPR_MLP1_2 PF07926 1040 - 1167 4.4e-26 TPR/MLP1/MLP2-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4430
AasI GACNNNNNNGTC 1 cut(s) 346
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 3 cut(s) 164, 4084, 4639
AccB1I GGYRCC 1 cut(s) 1171
AccB7I CCANNNNNTGG 1 cut(s) 3067
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 2516
AccII CGCG 6 cut(s) 77, 224, 1227, 2475, 2604, 3819
AccIII TCCGGA 1 cut(s) 84
AclWI GGATC 4 cut(s) 2794, 4347, 4368, 4466
AcoI YGGCCR 3 cut(s) 34, 1398, 3513
AcsI RAATTY 9 cut(s) 692, 1126, 1792, 2135, 2189, 2851, 2942, 3120, 4515
AcyI GRCGYC 2 cut(s) 48, 129
AdeI CACNNNGTG 1 cut(s) 3728
AfaI GTAC 8 cut(s) 179, 287, 1262, 1913, 2061, 2461, 3449, 3616
AfiI CCNNNNNNNGG 6 cut(s) 97, 484, 720, 1270, 1731, 3067
AflIII ACRYGT 2 cut(s) 75, 4236
AjnI CCWGG 3 cut(s) 2757, 3171, 3389
AjuI GAANNNNNNNTTGG 6 cut(s) 3188, 3220, 3708, 3740, 3986, 4018
AloI GAACNNNNNNTCC 2 cut(s) 1766, 1798
Alw21I GWGCWC 4 cut(s) 264, 1644, 1809, 3504
Alw44I GTGCAC 2 cut(s) 1640, 3500
AlwI GGATC 4 cut(s) 2794, 4347, 4368, 4466
AlwNI CAGNNNCTG 2 cut(s) 1445, 4525
Ama87I CYCGRG 4 cut(s) 167, 209, 443, 2991
Aor13HI TCCGGA 1 cut(s) 84
AoxI GGCC 8 cut(s) 34, 69, 486, 1398, 2040, 2712, 3513, 4291
ApaLI GTGCAC 2 cut(s) 1640, 3500
ApoI RAATTY 9 cut(s) 692, 1126, 1792, 2135, 2189, 2851, 2942, 3120, 4515
ArsI GACNNNNNNTTYG 2 cut(s) 1502, 1534
AseI ATTAAT 1 cut(s) 309
Asp700I GAANNNNTTC 2 cut(s) 1890, 3544
AspLEI GCGC 4 cut(s) 121, 226, 252, 3231
AspS9I GGNCC 4 cut(s) 885, 1955, 2041, 4576
AsuHPI GGTGA 3 cut(s) 133, 3587, 4481
AsuNHI GCTAGC 1 cut(s) 2030
AvaI CYCGRG 4 cut(s) 167, 209, 443, 2991
AvaII GGWCC 3 cut(s) 885, 1955, 4576
BaeGI GKGCMC 3 cut(s) 1644, 3504, 3694
BanI GGYRCC 1 cut(s) 1171
BanII GRGCYC 2 cut(s) 264, 1809
BbsI GAAGAC 5 cut(s) 344, 1031, 1079, 3207, 4613
Bbv12I GWGCWC 4 cut(s) 264, 1644, 1809, 3504
BbvCI CCTCAGC 4 cut(s) 504, 1152, 2307, 2709
BccI CCATC 5 cut(s) 437, 2932, 3219, 3982, 4531
BceAI ACGGC 1 cut(s) 2609
BcgI CGANNNNNNTGC 2 cut(s) 1925, 1959
BciT130I CCWGG 3 cut(s) 2759, 3173, 3391
BclI TGATCA 3 cut(s) 915, 1416, 1470
BfmI CTRYAG 8 cut(s) 798, 1014, 2055, 2432, 2703, 2891, 3075, 3791
BfoI RGCGCY 1 cut(s) 253
BfuAI ACCTGC 3 cut(s) 164, 4084, 4639
BglI GCCNNNNNGGC 1 cut(s) 3698
BglII AGATCT 3 cut(s) 1018, 2083, 4183
BlpI GCTNAGC 1 cut(s) 3732
Bme1390I CCNGG 3 cut(s) 2759, 3173, 3391
Bme18I GGWCC 3 cut(s) 885, 1955, 4576
BmeT110I CYCGRG 4 cut(s) 167, 209, 443, 2991
BmgT120I GGNCC 4 cut(s) 885, 1955, 2041, 4576
BmiI GGNNCC 3 cut(s) 89, 1173, 1957
BmrFI CCNGG 3 cut(s) 2759, 3173, 3391
BmtI GCTAGC 1 cut(s) 2034
BpiI GAAGAC 5 cut(s) 344, 1031, 1079, 3207, 4613
BplI GAGNNNNNCTC 8 cut(s) 14, 46, 239, 271, 2893, 2925, 3011, 3043
BpmI CTGGAG 7 cut(s) 947, 1962, 2750, 3194, 3512, 3579, 4178
Bpu10I CCTNAGC 6 cut(s) 504, 1152, 1730, 2307, 2709, 2910
Bpu1102I GCTNAGC 1 cut(s) 3732
BpuEI CTTGAG 8 cut(s) 215, 926, 1055, 1793, 2033, 2192, 3680, 3704
BsaAI YACGTR 1 cut(s) 2828
BsaBI GATNNNNATC 2 cut(s) 3673, 4062
BsaHI GRCGYC 2 cut(s) 48, 129
BsaI GGTCTC 2 cut(s) 3031, 4500
BsaJI CCNNGG 3 cut(s) 525, 1401, 3171
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 6 cut(s) 97, 484, 720, 1270, 1731, 3067
Bse1I ACTGG 3 cut(s) 433, 3495, 3562
Bse3DI GCAATG 6 cut(s) 1914, 2114, 2812, 3417, 4400, 4563
Bse8I GATNNNNATC 2 cut(s) 3673, 4062
BseAI TCCGGA 1 cut(s) 84
BseBI CCWGG 3 cut(s) 2759, 3173, 3391
BseDI CCNNGG 3 cut(s) 525, 1401, 3171
BseJI GATNNNNATC 2 cut(s) 3673, 4062
BseLI CCNNNNNNNGG 6 cut(s) 97, 484, 720, 1270, 1731, 3067
BseMI GCAATG 6 cut(s) 1914, 2114, 2812, 3417, 4400, 4563
BseNI ACTGG 3 cut(s) 433, 3495, 3562
BseRI GAGGAG 7 cut(s) 38, 155, 1946, 2324, 2492, 2512, 3782
BseSI GKGCMC 3 cut(s) 1644, 3504, 3694
BseYI CCCAGC 3 cut(s) 1725, 2463, 4478
BsgI GTGCAG 3 cut(s) 293, 341, 3219
Bsh1236I CGCG 6 cut(s) 77, 224, 1227, 2475, 2604, 3819
Bsh1285I CGRYCG 1 cut(s) 1275
BshFI GGCC 8 cut(s) 36, 71, 488, 1400, 2042, 2714, 3515, 4293
BshNI GGYRCC 1 cut(s) 1171
BsiEI CGRYCG 1 cut(s) 1275
BsiHKAI GWGCWC 4 cut(s) 264, 1644, 1809, 3504
BsiHKCI CYCGRG 4 cut(s) 167, 209, 443, 2991
BsiSI CCGG 3 cut(s) 33, 85, 489
BslFI GGGAC 3 cut(s) 1201, 1941, 3043
BslI CCNNNNNNNGG 6 cut(s) 97, 484, 720, 1270, 1731, 3067
BsmBI CGTCTC 3 cut(s) 19, 36, 923
BsmFI GGGAC 3 cut(s) 1201, 1941, 3043
BsmI GAATGC 3 cut(s) 475, 1726, 3872
BsnI GGCC 8 cut(s) 36, 71, 488, 1400, 2042, 2714, 3515, 4293
Bso31I GGTCTC 2 cut(s) 3031, 4500
BsoBI CYCGRG 4 cut(s) 167, 209, 443, 2991
Bsp1286I GDGCHC 5 cut(s) 264, 1644, 1809, 3504, 3694
Bsp13I TCCGGA 1 cut(s) 84
Bsp1407I TGTACA 1 cut(s) 1911
Bsp1720I GCTNAGC 1 cut(s) 3732
Bsp68I TCGCGA 1 cut(s) 2475
BspANI GGCC 8 cut(s) 36, 71, 488, 1400, 2042, 2714, 3515, 4293
BspEI TCCGGA 1 cut(s) 84
BspFNI CGCG 6 cut(s) 77, 224, 1227, 2475, 2604, 3819
BspHI TCATGA 2 cut(s) 1288, 1612
BspLI GGNNCC 3 cut(s) 89, 1173, 1957
BspMAI CTGCAG 5 cut(s) 802, 1018, 2059, 2436, 3079
BspMI ACCTGC 3 cut(s) 164, 4084, 4639
BspOI GCTAGC 1 cut(s) 2034
BspPI GGATC 4 cut(s) 2794, 4347, 4368, 4466
BspQI GCTCTTC 2 cut(s) 14, 1860
BspT107I GGYRCC 1 cut(s) 1171
BspTNI GGTCTC 2 cut(s) 3031, 4500
BsrBI CCGCTC 1 cut(s) 7
BsrDI GCAATG 6 cut(s) 1914, 2114, 2812, 3417, 4400, 4563
BsrGI TGTACA 1 cut(s) 1911
BsrI ACTGG 3 cut(s) 433, 3495, 3562
BssECI CCNNGG 3 cut(s) 525, 1401, 3171
BssNAI GTATAC 1 cut(s) 2517
BssNI GRCGYC 2 cut(s) 48, 129
BssT1I CCWWGG 1 cut(s) 525
Bst1107I GTATAC 1 cut(s) 2517
Bst2UI CCWGG 3 cut(s) 2759, 3173, 3391
Bst4CI ACNGT 7 cut(s) 112, 617, 704, 2721, 2777, 2895, 3595
Bst6I CTCTTC 9 cut(s) 14, 807, 1344, 1860, 1923, 2378, 2505, 2562, 4494
BstACI GRCGYC 2 cut(s) 48, 129
BstAPI GCANNNNNTGC 3 cut(s) 2489, 2672, 2828
BstAUI TGTACA 1 cut(s) 1911
BstBAI YACGTR 1 cut(s) 2828
BstFNI CGCG 6 cut(s) 77, 224, 1227, 2475, 2604, 3819
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 4 cut(s) 121, 226, 252, 3231
BstMCI CGRYCG 1 cut(s) 1275
BstNI CCWGG 3 cut(s) 2759, 3173, 3391
BstNSI RCATGY 8 cut(s) 644, 2378, 2890, 3963, 4240, 4323, 4490, 4619
BstSCI CCNGG 3 cut(s) 2757, 3171, 3389
BstSFI CTRYAG 8 cut(s) 798, 1014, 2055, 2432, 2703, 2891, 3075, 3791
BstSLI GKGCMC 3 cut(s) 1644, 3504, 3694
BstUI CGCG 6 cut(s) 77, 224, 1227, 2475, 2604, 3819
BstV2I GAAGAC 5 cut(s) 344, 1031, 1079, 3207, 4613
BstX2I RGATCY 6 cut(s) 1018, 2083, 2786, 4183, 4339, 4360
BstYI RGATCY 6 cut(s) 1018, 2083, 2786, 4183, 4339, 4360
BstZ17I GTATAC 1 cut(s) 2517
BsuRI GGCC 8 cut(s) 36, 71, 488, 1400, 2042, 2714, 3515, 4293
BtgZI GCGATG 1 cut(s) 3238
BtsI GCAGTG 2 cut(s) 3231, 4523
BtsIMutI CAGTG 4 cut(s) 3231, 3555, 4024, 4523
BtuMI TCGCGA 1 cut(s) 2475
BveI ACCTGC 3 cut(s) 164, 4084, 4639
CaiI CAGNNNCTG 2 cut(s) 1445, 4525
CciI TCATGA 2 cut(s) 1288, 1612
CfoI GCGC 4 cut(s) 121, 226, 252, 3231
Cfr13I GGNCC 4 cut(s) 885, 1955, 2041, 4576
CseI GACGC 6 cut(s) 83, 137, 940, 1203, 1274, 3899
Csp6I GTAC 8 cut(s) 178, 286, 1261, 1912, 2060, 2460, 3448, 3615
CviQI GTAC 8 cut(s) 178, 286, 1261, 1912, 2060, 2460, 3448, 3615
DraI TTTAAA 2 cut(s) 4260, 4678
DraIII CACNNNGTG 1 cut(s) 3728
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 3 cut(s) 34, 1398, 3513
Eam1104I CTCTTC 9 cut(s) 14, 807, 1344, 1860, 1923, 2378, 2505, 2562, 4494
EarI CTCTTC 9 cut(s) 14, 807, 1344, 1860, 1923, 2378, 2505, 2562, 4494
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 2 cut(s) 262, 1807
Eco130I CCWWGG 1 cut(s) 525
Eco24I GRGCYC 2 cut(s) 264, 1809
Eco31I GGTCTC 2 cut(s) 3031, 4500
Eco32I GATATC 2 cut(s) 2755, 3642
Eco47I GGWCC 3 cut(s) 885, 1955, 4576
Eco53kI GAGCTC 2 cut(s) 262, 1807
Eco88I CYCGRG 4 cut(s) 167, 209, 443, 2991
EcoICRI GAGCTC 2 cut(s) 262, 1807
EcoO109I RGGNCCY 1 cut(s) 4576
EcoRI GAATTC 1 cut(s) 1126
EcoRII CCWGG 3 cut(s) 2757, 3171, 3389
EcoRV GATATC 2 cut(s) 2755, 3642
EcoT14I CCWWGG 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 2929
EcoT38I GRGCYC 2 cut(s) 264, 1809
ErhI CCWWGG 1 cut(s) 525
Esp3I CGTCTC 3 cut(s) 19, 36, 923
FalI AAGNNNNNCTT 4 cut(s) 3188, 3220, 3708, 3740
FaqI GGGAC 3 cut(s) 1201, 1941, 3043
FauI CCCGC 1 cut(s) 889
FbaI TGATCA 3 cut(s) 915, 1416, 1470
FblI GTMKAC 1 cut(s) 2516
FriOI GRGCYC 2 cut(s) 264, 1809
GlaI GCGC 4 cut(s) 120, 225, 251, 3230
GsaI CCCAGC 3 cut(s) 1729, 2467, 4482
GsuI CTGGAG 7 cut(s) 947, 1962, 2750, 3194, 3512, 3579, 4178
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 8 cut(s) 36, 71, 488, 1400, 2042, 2714, 3515, 4293
HapII CCGG 3 cut(s) 33, 85, 489
HgaI GACGC 6 cut(s) 83, 137, 940, 1203, 1274, 3899
HhaI GCGC 4 cut(s) 121, 226, 252, 3231
Hin1I GRCGYC 2 cut(s) 48, 129
Hin6I GCGC 4 cut(s) 119, 224, 250, 3229
HinP1I GCGC 4 cut(s) 119, 224, 250, 3229
HincII GTYRAC 5 cut(s) 613, 2260, 2328, 3291, 3488
HindII GTYRAC 5 cut(s) 613, 2260, 2328, 3291, 3488
HindIII AAGCTT 3 cut(s) 671, 848, 3306
HpaII CCGG 3 cut(s) 33, 85, 489
HphI GGTGA 3 cut(s) 133, 3587, 4481
Hpy166II GTNNAC 9 cut(s) 613, 1642, 2260, 2328, 2517, 3291, 3488, 3502, 3587
Hpy8I GTNNAC 9 cut(s) 613, 1642, 2260, 2328, 2517, 3291, 3488, 3502, 3587
Hpy99I CGWCG 9 cut(s) 23, 50, 53, 77, 131, 248, 1232, 3615, 4403
HpyCH4III ACNGT 7 cut(s) 112, 617, 704, 2721, 2777, 2895, 3595
HpyCH4IV ACGT 4 cut(s) 48, 1507, 2827, 3613
HpySE526I ACGT 4 cut(s) 48, 1507, 2827, 3613
Hsp92I GRCGYC 2 cut(s) 48, 129
HspAI GCGC 4 cut(s) 119, 224, 250, 3229
Kpn2I TCCGGA 1 cut(s) 84
Ksp22I TGATCA 3 cut(s) 915, 1416, 1470
LguI GCTCTTC 2 cut(s) 14, 1860
MaeII ACGT 4 cut(s) 48, 1507, 2827, 3613
MaeIII GTNAC 5 cut(s) 1508, 2129, 3911, 4023, 4096
MbiI CCGCTC 1 cut(s) 7
MfeI CAATTG 1 cut(s) 3509
MflI RGATCY 6 cut(s) 1018, 2083, 2786, 4183, 4339, 4360
MhlI GDGCHC 5 cut(s) 264, 1644, 1809, 3504, 3694
MluI ACGCGT 1 cut(s) 75
MlyI GAGTC 7 cut(s) 221, 949, 1093, 1246, 1430, 1744, 2300
MmeI TCCRAC 3 cut(s) 42, 3856, 4419
Mph1103I ATGCAT 1 cut(s) 2929
MroI TCCGGA 1 cut(s) 84
MroXI GAANNNNTTC 2 cut(s) 1890, 3544
MslI CAYNNNNRTG 3 cut(s) 645, 1506, 3977
MspA1I CMGCKG 1 cut(s) 2269
MspI CCGG 3 cut(s) 33, 85, 489
MspR9I CCNGG 3 cut(s) 2759, 3173, 3391
MunI CAATTG 1 cut(s) 3509
Mva1269I GAATGC 3 cut(s) 475, 1726, 3872
MvaI CCWGG 3 cut(s) 2759, 3173, 3391
MvnI CGCG 6 cut(s) 77, 224, 1227, 2475, 2604, 3819
NheI GCTAGC 1 cut(s) 2030
NlaIV GGNNCC 3 cut(s) 89, 1173, 1957
NmeAIII GCCGAG 4 cut(s) 172, 1426, 2518, 3541
NmuCI GTSAC 3 cut(s) 1508, 2129, 3911
NruI TCGCGA 1 cut(s) 2475
NsiI ATGCAT 1 cut(s) 2929
NspI RCATGY 8 cut(s) 644, 2378, 2890, 3963, 4240, 4323, 4490, 4619
PaeI GCATGC 3 cut(s) 644, 4490, 4619
PaeR7I CTCGAG 4 cut(s) 167, 209, 443, 2991
PagI TCATGA 2 cut(s) 1288, 1612
PciI ACATGT 1 cut(s) 4236
PciSI GCTCTTC 2 cut(s) 14, 1860
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 3733
PctI GAATGC 3 cut(s) 475, 1726, 3872
PdmI GAANNNNTTC 2 cut(s) 1890, 3544
PflFI GACNNNGTC 2 cut(s) 47, 110
PflMI CCANNNNNTGG 1 cut(s) 3067
PleI GAGTC 7 cut(s) 220, 948, 1092, 1245, 1430, 1743, 2299
PpsI GAGTC 7 cut(s) 220, 948, 1092, 1245, 1430, 1743, 2299
Ppu21I YACGTR 1 cut(s) 2828
PpuMI RGGWCCY 1 cut(s) 4576
PscI ACATGT 1 cut(s) 4236
PshBI ATTAAT 1 cut(s) 309
PsiI TTATAA 1 cut(s) 4430
Psp124BI GAGCTC 2 cut(s) 264, 1809
Psp5II RGGWCCY 1 cut(s) 4576
Psp6I CCWGG 3 cut(s) 2757, 3171, 3389
PspFI CCCAGC 3 cut(s) 1725, 2463, 4478
PspGI CCWGG 3 cut(s) 2757, 3171, 3389
PspN4I GGNNCC 3 cut(s) 89, 1173, 1957
PspPI GGNCC 4 cut(s) 885, 1955, 2041, 4576
PspPPI RGGWCCY 1 cut(s) 4576
PspXI VCTCGAGB 2 cut(s) 167, 209
PstI CTGCAG 5 cut(s) 802, 1018, 2059, 2436, 3079
PstNI CAGNNNCTG 2 cut(s) 1445, 4525
PsuI RGATCY 6 cut(s) 1018, 2083, 2786, 4183, 4339, 4360
PsyI GACNNNGTC 2 cut(s) 47, 110
RruI TCGCGA 1 cut(s) 2475
RsaI GTAC 8 cut(s) 179, 287, 1262, 1913, 2061, 2461, 3449, 3616
RsaNI GTAC 8 cut(s) 178, 286, 1261, 1912, 2060, 2460, 3448, 3615
RseI CAYNNNNRTG 3 cut(s) 645, 1506, 3977
SacI GAGCTC 2 cut(s) 264, 1809
SapI GCTCTTC 2 cut(s) 14, 1860
Sau96I GGNCC 4 cut(s) 885, 1955, 2041, 4576
SchI GAGTC 7 cut(s) 221, 949, 1093, 1246, 1430, 1744, 2300
ScrFI CCNGG 3 cut(s) 2759, 3173, 3391
SduI GDGCHC 5 cut(s) 264, 1644, 1809, 3504, 3694
SfcI CTRYAG 8 cut(s) 798, 1014, 2055, 2432, 2703, 2891, 3075, 3791
Sfr274I CTCGAG 4 cut(s) 167, 209, 443, 2991
SinI GGWCC 3 cut(s) 885, 1955, 4576
SlaI CTCGAG 4 cut(s) 167, 209, 443, 2991
SmiMI CAYNNNNRTG 3 cut(s) 645, 1506, 3977
SphI GCATGC 3 cut(s) 644, 4490, 4619
SspI AATATT 1 cut(s) 2155
SstI GAGCTC 2 cut(s) 264, 1809
StyD4I CCNGG 3 cut(s) 2757, 3171, 3389
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 7 cut(s) 112, 617, 704, 2721, 2777, 2895, 3595
TaiI ACGT 4 cut(s) 51, 1510, 2830, 3616
TatI WGTACW 2 cut(s) 1911, 3447
TauI GCSGC 2 cut(s) 7, 134
TscAI CASTG 4 cut(s) 3238, 3562, 4024, 4530
TseFI GTSAC 3 cut(s) 1508, 2129, 3911
Tsp45I GTSAC 3 cut(s) 1508, 2129, 3911
TspGWI ACGGA 5 cut(s) 113, 356, 703, 1490, 2284
TspRI CASTG 4 cut(s) 3238, 3562, 4024, 4530
Tth111I GACNNNGTC 2 cut(s) 47, 110
Van91I CCANNNNNTGG 1 cut(s) 3067
VneI GTGCAC 2 cut(s) 1640, 3500
VpaK11BI GGWCC 3 cut(s) 885, 1955, 4576
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 9 cut(s) 692, 1126, 1792, 2135, 2189, 2851, 2942, 3120, 4515
XbaI TCTAGA 1 cut(s) 1835
XceI RCATGY 8 cut(s) 644, 2378, 2890, 3963, 4240, 4323, 4490, 4619
XhoI CTCGAG 4 cut(s) 167, 209, 443, 2991
XmiI GTMKAC 1 cut(s) 2516
XmnI GAANNNNTTC 2 cut(s) 1890, 3544
ZraI GACGTC 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 2929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.