pycom05g21670

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0003251
Physical Location & Seq
Forward (+)
24240368 .. 24240883
516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21670.1

Sequence Viewer

Length: 516 bp
ATGTCAGCGATGGAAGGGACCCGCAATGGGGGCAAACAAGCACCATCGAATGAAATGGAAGTTCAAGGCAATGCTACTTTGCCACAACAGCTGCTTCGGAAACGTCTTGCTTCTTCATCTACTTTTGAGTCCCGTGAGGAATCAAATAACCAAGGGGAAATTTGTCCTGAGGTGGCAGCACCTGTTTCAAAGAAGGCCAAAGGTTCAGATTCTCTACAAGGGACTGAAGGGCAGCCATCTGCTATTTCAGAAAATCTTGGGAGTGTTCCAGTCAAAGATGAACCTTTAGACGTCGCTGTTGATTTGCCGCAAAGTTCAAACGAGGAAGCTGCTGTTGATGCCGAGAAAGAAGAAACTGAGACTGCTGGGGAGAAGGTTGAAGAGCCAAATGAAGGACAGTTTGATGGTTTGAGTCAAGTTGAATCACAGAAGGATAGTGATTTAGCGGAGAATGTGGATGGATCAGATCCTCGGAAAAGATCTACCATCGCACGATGGAGCCAAAGATCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

172

Amino Acids

18.23

Weight (kDa)

4.42

Isoelectric Point (pI)

70.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
AciI CCGC 3 cut(s) 22, 308, 446
AclWI GGATC 2 cut(s) 461, 469
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 291
AfiI CCNNNNNNNGG 3 cut(s) 27, 28, 392
AgsI TTSAA 5 cut(s) 65, 189, 318, 380, 422
AluBI AGCT 2 cut(s) 91, 329
AluI AGCT 2 cut(s) 91, 329
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 2 cut(s) 461, 469
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 4 cut(s) 91, 176, 232, 329
ApoI RAATTY 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 18
AvaII GGWCC 1 cut(s) 18
AxyI CCTNAGG 1 cut(s) 168
BbvI GCAGC 4 cut(s) 78, 188, 244, 316
BccI CCATC 7 cut(s) 4, 52, 244, 398, 452, 489, 494
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BcoDI GTCTC 1 cut(s) 353
BglII AGATCT 1 cut(s) 479
BisI GCNGC 5 cut(s) 92, 177, 233, 308, 330
BlsI GCNGC 5 cut(s) 93, 178, 234, 309, 331
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 3 cut(s) 19, 20, 500
BmsI GCATC 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 151, 470
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 28, 392
Bse1I ACTGG 1 cut(s) 269
Bse21I CCTNAGG 1 cut(s) 168
Bse3DI GCAATG 2 cut(s) 31, 76
BseDI CCNNGG 2 cut(s) 151, 470
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 3 cut(s) 27, 28, 392
BseMI GCAATG 2 cut(s) 31, 76
BseMII CTCAG 2 cut(s) 159, 348
BseNI ACTGG 1 cut(s) 269
BseXI GCAGC 4 cut(s) 78, 188, 244, 316
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 1 cut(s) 197
BslFI GGGAC 3 cut(s) 31, 115, 235
BslI CCNNNNNNNGG 3 cut(s) 27, 28, 392
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 3 cut(s) 31, 115, 235
BsnI GGCC 1 cut(s) 197
Bsp143I GATC 4 cut(s) 461, 466, 479, 506
BspACI CCGC 3 cut(s) 22, 308, 446
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 160, 349
BspLI GGNNCC 3 cut(s) 19, 20, 500
BspPI GGATC 2 cut(s) 461, 469
BspQI GCTCTTC 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 31, 76
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 151, 470
BssMI GATC 4 cut(s) 461, 466, 479, 506
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 399
Bst6I CTCTTC 1 cut(s) 375
BstACI GRCGYC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 168, 357
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 4 cut(s) 464, 469, 482, 509
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 4 cut(s) 461, 466, 479, 506
BstMWI GCNNNNNNNGC 3 cut(s) 30, 88, 338
BstV1I GCAGC 4 cut(s) 78, 188, 244, 316
BstX2I RGATCY 2 cut(s) 466, 479
BstYI RGATCY 2 cut(s) 466, 479
Bsu36I CCTNAGG 1 cut(s) 168
BsuRI GGCC 1 cut(s) 197
BtgZI GCGATG 2 cut(s) 23, 472
BtsCI GGATG 1 cut(s) 463
CaiI CAGNNNCTG 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 18
CviJI RGCY 6 cut(s) 91, 197, 235, 329, 385, 501
CviKI_1 RGCY 6 cut(s) 91, 197, 235, 329, 385, 501
DdeI CTNAG 2 cut(s) 168, 357
DpnI GATC 4 cut(s) 463, 468, 481, 508
DpnII GATC 4 cut(s) 461, 466, 479, 506
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 246
Eco81I CCTNAGG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaqI GGGAC 3 cut(s) 31, 115, 235
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 5 cut(s) 92, 177, 233, 308, 330
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 5 cut(s) 92, 177, 233, 308, 330
GluI GCNGC 5 cut(s) 92, 177, 233, 308, 330
GsaI CCCAGC 1 cut(s) 369
HaeIII GGCC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 291
HinfI GANTC 5 cut(s) 128, 140, 209, 412, 422
Hpy188I TCNGA 5 cut(s) 99, 208, 250, 466, 474
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 6 cut(s) 8, 187, 221, 367, 386, 424
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4IV ACGT 2 cut(s) 103, 291
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 88, 338
HpyF3I CTNAG 2 cut(s) 168, 357
HpySE526I ACGT 2 cut(s) 103, 291
Hsp92I GRCGYC 1 cut(s) 291
KflI GGGWCCC 1 cut(s) 18
Kzo9I GATC 4 cut(s) 461, 466, 479, 506
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 498
LpnPI CCDG 5 cut(s) 180, 195, 282, 351, 495
Lsp1109I GCAGC 4 cut(s) 78, 188, 244, 316
LweI GCATC 1 cut(s) 328
MaeII ACGT 2 cut(s) 103, 291
MalI GATC 4 cut(s) 463, 468, 481, 508
MboI GATC 4 cut(s) 461, 466, 479, 506
MboII GAAGA 3 cut(s) 105, 362, 392
MflI RGATCY 2 cut(s) 466, 479
MluCI AATT 1 cut(s) 159
MlyI GAGTC 2 cut(s) 137, 421
MnlI CCTC 4 cut(s) 130, 163, 316, 480
MspA1I CMGCKG 1 cut(s) 91
MwoI GCNNNNNNNGC 3 cut(s) 30, 88, 338
NdeII GATC 4 cut(s) 461, 466, 479, 506
NlaIV GGNNCC 3 cut(s) 19, 20, 500
NmeAIII GCCGAG 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 375
PfeI GAWTC 3 cut(s) 140, 209, 422
PkrI GCNGC 5 cut(s) 93, 178, 234, 309, 331
PleI GAGTC 2 cut(s) 136, 420
PpsI GAGTC 2 cut(s) 136, 420
PpuMI RGGWCCY 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 365
PspN4I GGNNCC 3 cut(s) 19, 20, 500
PspPI GGNCC 1 cut(s) 18
PspPPI RGGWCCY 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 466, 479
PvuII CAGCTG 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 375
SatI GCNGC 5 cut(s) 92, 177, 233, 308, 330
Sau3AI GATC 4 cut(s) 461, 466, 479, 506
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 137, 421
SfaNI GCATC 1 cut(s) 328
SinI GGWCC 1 cut(s) 18
Sse9I AATT 1 cut(s) 159
SsiI CCGC 3 cut(s) 22, 308, 446
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 399
TaiI ACGT 2 cut(s) 106, 294
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 159
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 3 cut(s) 140, 209, 422
TseI GCWGC 4 cut(s) 91, 176, 232, 329
TspDTI ATGAA 4 cut(s) 66, 105, 294, 405
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 159
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.