Rmu_sc0015264.1_g000001

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015264.1
OG0003251
Physical Location & Seq
Forward (+)
1 .. 1647
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015264.1_g000001.1.cds

Sequence Viewer

Length: 793 bp
gtggttggattcattagaatctactgacatggctgaggttgatcgtgcggtggtgccgaagattcctgttggtgtttcaggaacagcattagcagcttcccttttacgcgatgggtggagtcttgcaaaaatgtatgcgaagtaccaagaggcggtcgatgctttgcgtcatgagcagttgggaaggaaggaatctgaggcaatcttgcaacgggttctatatgaaatagaagagaaagctgaagtcatcatggatgaaagagctggcctgcgacagagagattcctgctcagctgcagaagatggacgctgccgcggcggatcgttgacccgagtgctcctaccggcgacccgattccatcttcgccatccggccacgacacgacagcggaccaccatcaatcgaagcagagagagtcgaaggcccgaagttcatgatcctctgacggtgtctgggcaagttccggcaactccggcgtccggcccccccacgacggcgcaccggcacggttatcttcttctcaacgtcgccgtcacacttctggtggtagttcgttcaattgtcgactgtggaggacgaatcgacgacaactgcgagaatcctactctcaagaacatccctcaagaatttcaatcacttccttcatccccctatccacgattcctcatcctcctctcaattcctccgaagcctatgctccctcgtttcccgacaattcaattcccgccatgccaagaaccctcatcctgggtattccaggagcatggtctctgcctcaagctacaatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

263

Amino Acids

29.29

Weight (kDa)

8.27

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AccI GTMKAC 1 cut(s) 565
AccII CGCG 2 cut(s) 109, 316
AciI CCGC 7 cut(s) 48, 153, 314, 316, 319, 389, 726
AclWI GGATC 2 cut(s) 329, 432
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 1 cut(s) 627
AcuI CTGAAG 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 4 cut(s) 152, 480, 494, 748
AgsI TTSAA 3 cut(s) 559, 633, 720
AjnI CCWGG 2 cut(s) 747, 757
AluBI AGCT 5 cut(s) 96, 240, 264, 294, 782
AluI AGCT 5 cut(s) 96, 240, 264, 294, 782
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 774
AlwI GGATC 2 cut(s) 329, 432
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 4 cut(s) 266, 373, 423, 482
ApeKI GCWGC 3 cut(s) 93, 294, 310
ApoI RAATTY 1 cut(s) 627
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 3 cut(s) 391, 424, 483
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 391
BanI GGYRCC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 340
BbvCI CCTCAGC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 105, 281, 297
BccI CCATC 5 cut(s) 105, 297, 367, 376, 405
BceAI ACGGC 2 cut(s) 511, 516
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 2 cut(s) 749, 759
BcoDI GTCTC 1 cut(s) 774
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 5 cut(s) 94, 295, 311, 314, 317
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 5 cut(s) 95, 296, 312, 315, 318
Bme1390I CCNGG 2 cut(s) 749, 759
Bme18I GGWCC 1 cut(s) 391
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 391, 424, 483
BmiI GGNNCC 2 cut(s) 55, 485
BmrFI CCNGG 2 cut(s) 749, 759
BmsI GCATC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 34
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 3 cut(s) 594, 607, 762
BsaHI GRCGYC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 2 cut(s) 314, 748
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 480, 494, 748
Bse118I RCCGGY 2 cut(s) 344, 502
BseBI CCWGG 2 cut(s) 749, 759
BseDI CCNNGG 2 cut(s) 314, 748
BseGI GGATG 6 cut(s) 260, 368, 616, 645, 667, 744
BseLI CCNNNNNNNGG 4 cut(s) 152, 480, 494, 748
BseMII CTCAG 3 cut(s) 25, 187, 304
BseRI GAGGAG 1 cut(s) 663
BseXI GCAGC 3 cut(s) 105, 281, 297
Bsh1236I CGCG 2 cut(s) 109, 316
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 4 cut(s) 268, 375, 425, 484
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 6 cut(s) 345, 372, 465, 474, 481, 503
BslI CCNNNNNNNGG 4 cut(s) 152, 480, 494, 748
BsmAI GTCTC 1 cut(s) 774
BsnI GGCC 4 cut(s) 268, 375, 425, 484
Bso31I GGTCTC 1 cut(s) 774
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 3 cut(s) 41, 321, 437
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 7 cut(s) 48, 153, 314, 316, 319, 389, 726
BspANI GGCC 4 cut(s) 268, 375, 425, 484
BspCNI CTCAG 3 cut(s) 26, 188, 303
BspFNI CGCG 2 cut(s) 109, 316
BspHI TCATGA 2 cut(s) 170, 434
BspLI GGNNCC 2 cut(s) 55, 485
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 2 cut(s) 329, 432
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 774
BsrFI RCCGGY 2 cut(s) 344, 502
BssAI RCCGGY 2 cut(s) 344, 502
BssECI CCNNGG 2 cut(s) 314, 748
BssMI GATC 3 cut(s) 41, 321, 437
BssNI GRCGYC 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 749, 759
Bst4CI ACNGT 3 cut(s) 449, 510, 570
Bst6I CTCTTC 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 477
BstC8I GCNNGC 2 cut(s) 266, 270
BstDEI CTNAG 3 cut(s) 34, 196, 290
BstDSI CCRYGG 1 cut(s) 314
BstF5I GGATG 6 cut(s) 260, 368, 616, 645, 667, 744
BstFNI CGCG 2 cut(s) 109, 316
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 3 cut(s) 44, 324, 440
BstMAI GTCTC 1 cut(s) 774
BstMBI GATC 3 cut(s) 41, 321, 437
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 5 cut(s) 93, 159, 173, 316, 474
BstNI CCWGG 2 cut(s) 749, 759
BstSCI CCNGG 2 cut(s) 747, 757
BstSFI CTRYAG 1 cut(s) 295
BstUI CGCG 2 cut(s) 109, 316
BstV1I GCAGC 3 cut(s) 105, 281, 297
BstXI CCANNNNNNTGG 1 cut(s) 765
BsuRI GGCC 4 cut(s) 268, 375, 425, 484
BtgI CCRYGG 1 cut(s) 314
BtgZI GCGATG 1 cut(s) 124
BtsCI GGATG 6 cut(s) 260, 368, 616, 645, 667, 744
Cac8I GCNNGC 2 cut(s) 266, 270
CciI TCATGA 2 cut(s) 170, 434
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 2 cut(s) 344, 502
Cfr13I GGNCC 3 cut(s) 391, 424, 483
Cfr42I CCGCGG 1 cut(s) 317
CseI GACGC 3 cut(s) 156, 316, 466
Csp6I GTAC 1 cut(s) 143
CviAII CATG 6 cut(s) 29, 171, 251, 435, 730, 765
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 3 cut(s) 34, 196, 290
DpnI GATC 3 cut(s) 43, 323, 439
DpnII GATC 3 cut(s) 41, 321, 437
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 747, 757
FaeI CATG 6 cut(s) 32, 174, 254, 438, 733, 768
FatI CATG 6 cut(s) 28, 170, 250, 434, 729, 764
FauI CCCGC 1 cut(s) 733
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 5 cut(s) 94, 295, 311, 314, 317
FokI GGATG 6 cut(s) 267, 355, 603, 632, 654, 731
Fsp4HI GCNGC 5 cut(s) 94, 295, 311, 314, 317
GlaI GCGC 1 cut(s) 499
GluI GCNGC 5 cut(s) 94, 295, 311, 314, 317
HaeIII GGCC 4 cut(s) 268, 375, 425, 484
HapII CCGG 6 cut(s) 345, 372, 465, 474, 481, 503
HgaI GACGC 3 cut(s) 156, 316, 466
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 6 cut(s) 32, 174, 254, 438, 733, 768
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HincII GTYRAC 2 cut(s) 328, 566
HindII GTYRAC 2 cut(s) 328, 566
HpaII CCGG 6 cut(s) 345, 372, 465, 474, 481, 503
Hpy166II GTNNAC 2 cut(s) 328, 566
Hpy188I TCNGA 3 cut(s) 197, 445, 688
Hpy188III TCNNGA 7 cut(s) 79, 171, 435, 611, 624, 710, 790
Hpy8I GTNNAC 2 cut(s) 328, 566
Hpy99I CGWCG 3 cut(s) 497, 531, 588
HpyAV CCTTC 4 cut(s) 178, 182, 415, 652
HpyCH4III ACNGT 3 cut(s) 449, 510, 570
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 3 cut(s) 126, 209, 297
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 159, 173, 316, 474
HpyF3I CTNAG 3 cut(s) 34, 196, 290
HpySE526I ACGT 1 cut(s) 526
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 6 cut(s) 32, 174, 254, 438, 733, 768
HspAI GCGC 1 cut(s) 498
KspI CCGCGG 1 cut(s) 317
Kzo9I GATC 3 cut(s) 41, 321, 437
LmnI GCTCC 3 cut(s) 343, 703, 761
Lsp1109I GCAGC 3 cut(s) 105, 281, 297
LweI GCATC 1 cut(s) 149
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 1 cut(s) 533
MalI GATC 3 cut(s) 43, 323, 439
MboI GATC 3 cut(s) 41, 321, 437
MboII GAAGA 6 cut(s) 71, 243, 312, 354, 507, 510
MfeI CAATTG 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 5 cut(s) 559, 627, 679, 715, 720
MlyI GAGTC 2 cut(s) 128, 425
MspA1I CMGCKG 3 cut(s) 294, 316, 389
MspI CCGG 6 cut(s) 345, 372, 465, 474, 481, 503
MspR9I CCNGG 2 cut(s) 749, 759
MunI CAATTG 1 cut(s) 559
MvaI CCWGG 2 cut(s) 749, 759
MvnI CGCG 2 cut(s) 109, 316
MwoI GCNNNNNNNGC 5 cut(s) 93, 159, 173, 316, 474
NdeII GATC 3 cut(s) 41, 321, 437
NlaIII CATG 6 cut(s) 32, 174, 254, 438, 733, 768
NlaIV GGNNCC 2 cut(s) 55, 485
NmuCI GTSAC 1 cut(s) 533
PagI TCATGA 2 cut(s) 170, 434
PcsI WCGNNNNNNNCGW 1 cut(s) 592
PfeI GAWTC 9 cut(s) 9, 18, 62, 192, 282, 355, 580, 599, 661
PflFI GACNNNGTC 1 cut(s) 449
PfoI TCCNGGA 1 cut(s) 757
PkrI GCNGC 5 cut(s) 95, 296, 312, 315, 318
PleI GAGTC 2 cut(s) 127, 424
PpsI GAGTC 2 cut(s) 127, 424
Psp6I CCWGG 2 cut(s) 747, 757
PspGI CCWGG 2 cut(s) 747, 757
PspN4I GGNNCC 2 cut(s) 55, 485
PspPI GGNCC 3 cut(s) 391, 424, 483
PstI CTGCAG 1 cut(s) 299
PsyI GACNNNGTC 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 294
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SacII CCGCGG 1 cut(s) 317
SalI GTCGAC 1 cut(s) 564
SatI GCNGC 5 cut(s) 94, 295, 311, 314, 317
Sau3AI GATC 3 cut(s) 41, 321, 437
Sau96I GGNCC 3 cut(s) 391, 424, 483
SchI GAGTC 2 cut(s) 128, 425
ScrFI CCNGG 2 cut(s) 749, 759
SduI GDGCHC 1 cut(s) 340
SetI ASST 7 cut(s) 40, 98, 242, 266, 296, 529, 784
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 295
Sfr303I CCGCGG 1 cut(s) 317
SgrBI CCGCGG 1 cut(s) 317
SinI GGWCC 1 cut(s) 391
SmlI CTYRAG 3 cut(s) 609, 622, 777
SmoI CTYRAG 3 cut(s) 609, 622, 777
Sse9I AATT 5 cut(s) 559, 627, 679, 715, 720
SsiI CCGC 7 cut(s) 48, 153, 314, 316, 319, 389, 726
StyD4I CCNGG 2 cut(s) 747, 757
TaaI ACNGT 3 cut(s) 449, 510, 570
TaiI ACGT 1 cut(s) 529
TaqI TCGA 5 cut(s) 157, 404, 419, 565, 583
TasI AATT 5 cut(s) 559, 627, 679, 715, 720
TauI GCSGC 2 cut(s) 316, 319
TfiI GAWTC 9 cut(s) 9, 18, 62, 192, 282, 355, 580, 599, 661
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 3 cut(s) 93, 294, 310
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 4 cut(s) 238, 271, 423, 634
Tth111I GACNNNGTC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.