Rroxscaffold_7G00176540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003251
Physical Location & Seq
Reverse (-)
16105816 .. 16110033
4218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176540.1

Sequence Viewer

Length: 312 bp
ATGCCCGAAATTCATGATCCTTTGACGGTTTACGGGCAAATTCCAGCAACTCCGGCGTCCGGTAGGGCTGTCAATGGGTCGTGTCGGGTCAAGACAAGTGGTGACCGGTTATCACTCGTACCAACGACTTCCTATACATTTCCAATTAAGGGTCACCGGGGTGGCAAAACTCGCTCAATTCCTCCAACCACTAATATCAAATCACAAACAATTCCAAACTCCGCCAATCGTGGTGAGAAACCCTATCAACTAGAGAGGAAAATCGTAAAAATCCTATGCTCGAAGCAGCCTGCAATTGTCTCGAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.13

Weight (kDa)

10.24

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 11
AcsI RAATTY 2 cut(s) 9, 39
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 59, 149
AgeI ACCGGT 1 cut(s) 105
AleI CACNNNNGTG 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 2 cut(s) 9, 39
AsiGI ACCGGT 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 113, 146, 245
BbvI GCAGC 1 cut(s) 298
BcgI CGANNNNNNTGC 1 cut(s) 282
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 2 cut(s) 59, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 149
Bse118I RCCGGY 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 59, 149
BseXI GCAGC 1 cut(s) 298
BshTI ACCGGT 1 cut(s) 105
BsiSI CCGG 4 cut(s) 53, 60, 106, 157
BslI CCNNNNNNNGG 2 cut(s) 59, 149
BsmAI GTCTC 1 cut(s) 304
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 222
BspHI TCATGA 1 cut(s) 13
BspPI GGATC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 16
BssNI GRCGYC 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 291
BstEII GGTNACC 2 cut(s) 101, 152
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 53, 171
BstPI GGTNACC 2 cut(s) 101, 152
BstSCI CCNGG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 291
CciI TCATGA 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 105
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 119
CspAI ACCGGT 1 cut(s) 105
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 1 cut(s) 14
CviJI RGCY 2 cut(s) 68, 289
CviKI_1 RGCY 2 cut(s) 68, 289
CviQI GTAC 1 cut(s) 119
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EciI GGCGGA 1 cut(s) 211
Eco91I GGTNACC 2 cut(s) 101, 152
EcoO65I GGTNACC 2 cut(s) 101, 152
FaeI CATG 1 cut(s) 17
FaiI YATR 3 cut(s) 15, 135, 277
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 287
HapII CCGG 4 cut(s) 53, 60, 106, 157
HgaI GACGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 17
HpaII CCGG 4 cut(s) 53, 60, 106, 157
HphI GGTGA 3 cut(s) 113, 146, 245
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 14, 91, 301
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 171
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 57, 66, 73, 119, 170, 303
Lsp1109I GCAGC 1 cut(s) 298
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 101, 152
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MfeI CAATTG 1 cut(s) 294
MluCI AATT 6 cut(s) 9, 39, 144, 177, 210, 294
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 192, 249
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 4 cut(s) 53, 60, 106, 157
MspR9I CCNGG 1 cut(s) 158
MunI CAATTG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 53, 171
NciI CCSGG 1 cut(s) 158
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 17
NmuCI GTSAC 2 cut(s) 101, 152
OliI CACNNNNGTG 1 cut(s) 159
PagI TCATGA 1 cut(s) 13
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 1 cut(s) 288
PspEI GGTNACC 2 cut(s) 101, 152
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 6 cut(s) 9, 39, 144, 177, 210, 294
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 281, 302
TasI AATT 6 cut(s) 9, 39, 144, 177, 210, 294
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseFI GTSAC 2 cut(s) 101, 152
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 2 cut(s) 101, 152
XapI RAATTY 2 cut(s) 9, 39
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.