Rmu_sc0029290.1_g000002

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029290.1
OG0003251
Physical Location & Seq
Forward (+)
8069 .. 8338
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029290.1_g000002.1.cds

Sequence Viewer

Length: 270 bp
atgccgcttttcgtctccgacgaggagttctccggccaccgagacgacgtcgcttgggtggcggagaaggccgacgcgtttatccggaacctctacacggagcttgacatcgttaaggcgcagaacgacgccgcttcgatcaccgccgagcagacctgctctctcctcgagcagaagtacctctccctctccgatgaacactccaagctcgagtccgaactcgcgcagctcaagtcctcgttcgacgagcgcctctccgagctcgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

89

Amino Acids

10.04

Weight (kDa)

4.34

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 164
AccII CGCG 2 cut(s) 77, 224
AccIII TCCGGA 1 cut(s) 84
AciI CCGC 4 cut(s) 5, 62, 132, 144
AcoI YGGCCR 1 cut(s) 34
AcyI GRCGYC 2 cut(s) 48, 129
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 75
AluBI AGCT 4 cut(s) 103, 208, 229, 262
AluI AGCT 4 cut(s) 103, 208, 229, 262
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 19, 36
Ama87I CYCGRG 2 cut(s) 167, 209
Aor13HI TCCGGA 1 cut(s) 84
AoxI GGCC 2 cut(s) 34, 69
ApeKI GCWGC 1 cut(s) 226
AspLEI GCGC 3 cut(s) 121, 226, 252
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 2 cut(s) 167, 209
BanII GRGCYC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 19, 36
BfoI RGCGCY 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 3 cut(s) 5, 132, 227
BlsI GCNGC 3 cut(s) 6, 133, 228
BmeT110I CYCGRG 2 cut(s) 167, 209
BmiI GGNNCC 1 cut(s) 89
BplI GAGNNNNNCTC 3 cut(s) 14, 46, 239
BpuEI CTTGAG 1 cut(s) 215
BsaHI GRCGYC 2 cut(s) 48, 129
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 97
BseRI GAGGAG 2 cut(s) 38, 155
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 2 cut(s) 77, 224
BshFI GGCC 2 cut(s) 36, 71
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 2 cut(s) 167, 209
BsiSI CCGG 2 cut(s) 33, 85
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 19, 36
BsmBI CGTCTC 2 cut(s) 19, 36
BsnI GGCC 2 cut(s) 36, 71
BsoBI CYCGRG 2 cut(s) 167, 209
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 4 cut(s) 5, 62, 132, 144
BspANI GGCC 2 cut(s) 36, 71
BspEI TCCGGA 1 cut(s) 84
BspFNI CGCG 2 cut(s) 77, 224
BspLI GGNNCC 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 164
BssMI GATC 1 cut(s) 138
BssNI GRCGYC 2 cut(s) 48, 129
BstACI GRCGYC 2 cut(s) 48, 129
BstC8I GCNNGC 1 cut(s) 264
BstFNI CGCG 2 cut(s) 77, 224
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 3 cut(s) 121, 226, 252
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 19, 36
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstUI CGCG 2 cut(s) 77, 224
BstV1I GCAGC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 36, 71
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 264
CfoI GCGC 3 cut(s) 121, 226, 252
CseI GACGC 2 cut(s) 83, 137
Csp6I GTAC 1 cut(s) 178
CviJI RGCY 6 cut(s) 36, 71, 103, 208, 229, 262
CviKI_1 RGCY 6 cut(s) 36, 71, 103, 208, 229, 262
CviQI GTAC 1 cut(s) 178
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 34
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 262
Eco88I CYCGRG 2 cut(s) 167, 209
EcoICRI GAGCTC 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 264
Esp3I CGTCTC 2 cut(s) 19, 36
Fnu4HI GCNGC 3 cut(s) 5, 132, 227
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 3 cut(s) 5, 132, 227
GlaI GCGC 3 cut(s) 120, 225, 251
GluI GCNGC 3 cut(s) 5, 132, 227
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 2 cut(s) 36, 71
HapII CCGG 2 cut(s) 33, 85
HgaI GACGC 2 cut(s) 83, 137
HhaI GCGC 3 cut(s) 121, 226, 252
Hin1I GRCGYC 2 cut(s) 48, 129
Hin6I GCGC 3 cut(s) 119, 224, 250
HinP1I GCGC 3 cut(s) 119, 224, 250
HinfI GANTC 1 cut(s) 212
HpaII CCGG 2 cut(s) 33, 85
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 4 cut(s) 19, 193, 217, 259
Hpy188III TCNNGA 1 cut(s) 85
Hpy99I CGWCG 6 cut(s) 23, 50, 53, 77, 131, 248
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 48
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 2 cut(s) 48, 129
HspAI GCGC 3 cut(s) 119, 224, 250
Kpn2I TCCGGA 1 cut(s) 84
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 46, 98, 169
Lsp1109I GCAGC 1 cut(s) 238
MaeII ACGT 1 cut(s) 48
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 264
MluI ACGCGT 1 cut(s) 75
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 7 cut(s) 16, 101, 176, 191, 197, 247, 263
MroI TCCGGA 1 cut(s) 84
MseI TTAA 1 cut(s) 114
MspI CCGG 2 cut(s) 33, 85
MvnI CGCG 2 cut(s) 77, 224
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NdeII GATC 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 172
PaeR7I CTCGAG 2 cut(s) 167, 209
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 6, 133, 228
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 89
PspXI VCTCGAGB 2 cut(s) 167, 209
PsyI GACNNNGTC 1 cut(s) 47
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 5, 132, 227
Sau3AI GATC 1 cut(s) 138
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 264
SetI ASST 8 cut(s) 51, 93, 105, 158, 183, 210, 231, 264
Sfr274I CTCGAG 2 cut(s) 167, 209
SlaI CTCGAG 2 cut(s) 167, 209
SmlI CTYRAG 3 cut(s) 167, 209, 230
SmoI CTYRAG 3 cut(s) 167, 209, 230
SsiI CCGC 4 cut(s) 5, 62, 132, 144
SstI GAGCTC 1 cut(s) 264
TaiI ACGT 1 cut(s) 51
TaqI TCGA 4 cut(s) 137, 168, 210, 243
TauI GCSGC 2 cut(s) 7, 134
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 113
Tth111I GACNNNGTC 1 cut(s) 47
XhoI CTCGAG 2 cut(s) 167, 209
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.