pycom10g18450

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0003251
Physical Location & Seq
Forward (+)
21734818 .. 21736020
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18450.1

Sequence Viewer

Length: 1152 bp
ATGTCAGAGATGGAAGGGACCCGCAATGGGGGCAAACAAGCGCCATCGAATGAAATGGAAGTTCAAGGCAATGCTACTTTGACACAACCGCTGCTTCGGAAACGTCTGGCTTCTTCATCTACTTCTGAGTCCCGTGAGGAAACAAATAATCAAGGGGAAATTTGTCCTGATGTGGCAGCACCTGTGTCAAAGAAGTCCAAAGGTTCAGATTCTCCACAGGGGAGTGAAGGGCAGCCATCTACTATTTCGGAGAATCTTGGGAGTGTTCCAGTCAAAGATGAACCTTTAGACATCGCTGTTGATTTGCCGCAAGGTTCAAATGAGGAAGCTGCTGTTGATGCTGAGAAAGAAGAAACTGAGACTGCTGGGGAGAAGGTTGAAGAGCCAAATGAAGGACAGTTTGATGGTTCGAGTCAAGTTGAATCACAACCTGAGAAGGATAGTGATTTAGTGGAGAATGTGGATGGGTCAGATGGAAAAGATATGCCATCACACGATGGAGCCAAAGATCAGGTTGAGCTGGAGCAACAGTCCAGTGATTTTGGAGGAGACCGAGAAGAGGGAGAGCTGGTCCCTGATATTTCTGAGCTTGAAGGTGGTGATACGATGGCCAGTCCTGAAATAGGGGAAGTTCAACCTGAACCTGTAACAACTCCCGAGGCTTCCCCAGCCAGGGGCGATGATTATGGTGTTGCTGCTGGTTCTGTTGTGGATATCGGTGAGGTTAATTCTCCAGAGATTCTTAATGATGAGAAAAATGATGACATTGATGCAACTGAAGAAACCGCTGATGGTTCCGATAAGTCAATTGATGGTAATGACCAAACTGCGATGGAGACTGATCATGCTGCCGAAGCTACCTCAGTAATCGTGGATACCACTTCAACAGCGGAAGTTAGCATTTCAAAACAAACTAGTCCCAGTCTTGCGGCAGAAGAGGTGAGACAGGTGTCTCCAGTGACTAATCCGTCAACTACCATAAATATAACAGAACGAGCCGTGGTGAATGCACGCCGAAGACAACAGGCAAGAGGGCTTTCAACATCACCAAGCCCAGGTCGTGGTGGACCAGCTGGAAGACAAGGTGGGAGACCTGGACGCGGACGCGGACGTGGACGATCTCGTGGGTCAACATCTGGCGATCAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

384

Amino Acids

39.96

Weight (kDa)

4.22

Isoelectric Point (pI)

58.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 967
AccB7I CCANNNNNTGG 1 cut(s) 1061
AccII CGCG 2 cut(s) 1101, 1107
AciI CCGC 8 cut(s) 22, 89, 308, 786, 890, 929, 1101, 1107
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 798
AgsI TTSAA 9 cut(s) 65, 318, 380, 422, 593, 635, 885, 906, 1041
AhlI ACTAGT 1 cut(s) 914
AjiI CACGTC 1 cut(s) 1112
AjnI CCWGG 3 cut(s) 671, 1054, 1093
AluBI AGCT 6 cut(s) 329, 520, 568, 589, 857, 1073
AluI AGCT 6 cut(s) 329, 520, 568, 589, 857, 1073
Alw26I GTCTC 6 cut(s) 353, 543, 830, 937, 957, 1084
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 6 cut(s) 91, 176, 232, 329, 695, 848
ApoI RAATTY 1 cut(s) 159
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 3 cut(s) 18, 571, 1067
AsuHPI GGTGA 5 cut(s) 611, 731, 952, 1015, 1038
AvaI CYCGRG 1 cut(s) 656
AvaII GGWCC 3 cut(s) 18, 571, 1067
BalI TGGCCA 1 cut(s) 611
BauI CACGAG 1 cut(s) 1122
BbsI GAAGAC 2 cut(s) 1024, 1084
BbvI GCAGC 6 cut(s) 78, 188, 244, 316, 682, 835
BceAI ACGGC 1 cut(s) 983
BciT130I CCWGG 3 cut(s) 673, 1056, 1095
BciVI GTATCC 1 cut(s) 868
BclI TGATCA 1 cut(s) 841
BcoDI GTCTC 6 cut(s) 353, 543, 830, 937, 957, 1084
BcuI ACTAGT 1 cut(s) 914
BfaI CTAG 1 cut(s) 915
BfoI RGCGCY 1 cut(s) 44
BfuI GTATCC 1 cut(s) 868
BisI GCNGC 8 cut(s) 92, 177, 233, 308, 330, 696, 849, 930
BlsI GCNGC 8 cut(s) 93, 178, 234, 309, 331, 697, 850, 931
Bme1390I CCNGG 3 cut(s) 673, 1056, 1095
Bme18I GGWCC 3 cut(s) 18, 571, 1067
BmeT110I CYCGRG 1 cut(s) 656
BmgBI CACGTC 1 cut(s) 1112
BmgT120I GGNCC 3 cut(s) 18, 571, 1067
BmiI GGNNCC 5 cut(s) 19, 20, 502, 573, 796
BmrFI CCNGG 3 cut(s) 673, 1056, 1095
BmrI ACTGGG 1 cut(s) 915
BmsI GCATC 2 cut(s) 328, 760
BmuI ACTGGG 1 cut(s) 915
BoxI GACNNNNGTC 1 cut(s) 949
BpiI GAAGAC 2 cut(s) 1024, 1084
BpmI CTGGAG 3 cut(s) 542, 717, 939
BsaI GGTCTC 2 cut(s) 543, 1084
BsaJI CCNNGG 4 cut(s) 657, 672, 999, 1054
BsaXI ACNNNNNCTCC 4 cut(s) 515, 545, 555, 585
Bse1I ACTGG 5 cut(s) 269, 534, 612, 921, 956
Bse3DI GCAATG 2 cut(s) 31, 76
BseBI CCWGG 3 cut(s) 673, 1056, 1095
BseDI CCNNGG 4 cut(s) 657, 672, 999, 1054
BseGI GGATG 1 cut(s) 469
BseMI GCAATG 2 cut(s) 31, 76
BseMII CTCAG 6 cut(s) 117, 333, 348, 423, 576, 876
BseNI ACTGG 5 cut(s) 269, 534, 612, 921, 956
BseRI GAGGAG 1 cut(s) 561
BseXI GCAGC 6 cut(s) 78, 188, 244, 316, 682, 835
BseYI CCCAGC 2 cut(s) 365, 667
Bsh1236I CGCG 2 cut(s) 1101, 1107
BshFI GGCC 1 cut(s) 611
BsiHKCI CYCGRG 1 cut(s) 656
BslFI GGGAC 4 cut(s) 31, 115, 557, 903
BsmAI GTCTC 6 cut(s) 353, 543, 830, 937, 957, 1084
BsmFI GGGAC 4 cut(s) 31, 115, 557, 903
BsmI GAATGC 1 cut(s) 1012
BsnI GGCC 1 cut(s) 611
Bso31I GGTCTC 2 cut(s) 543, 1084
BsoBI CYCGRG 1 cut(s) 656
Bsp143I GATC 4 cut(s) 508, 841, 1118, 1141
BspACI CCGC 8 cut(s) 22, 89, 308, 786, 890, 929, 1101, 1107
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 6 cut(s) 118, 334, 349, 424, 577, 875
BspFNI CGCG 2 cut(s) 1101, 1107
BspLI GGNNCC 5 cut(s) 19, 20, 502, 573, 796
BspQI GCTCTTC 1 cut(s) 375
BspTNI GGTCTC 2 cut(s) 543, 1084
BsrDI GCAATG 2 cut(s) 31, 76
BsrI ACTGG 5 cut(s) 269, 534, 612, 921, 956
BssECI CCNNGG 4 cut(s) 657, 672, 999, 1054
BssMI GATC 4 cut(s) 508, 841, 1118, 1141
BssSI CACGAG 1 cut(s) 1122
Bst2BI CACGAG 1 cut(s) 1122
Bst2UI CCWGG 3 cut(s) 673, 1056, 1095
Bst4CI ACNGT 2 cut(s) 399, 531
Bst6I CTCTTC 3 cut(s) 375, 552, 930
BstC8I GCNNGC 1 cut(s) 1012
BstDEI CTNAG 6 cut(s) 126, 342, 357, 432, 585, 862
BstDSI CCRYGG 1 cut(s) 999
BstENI CCTNNNNNAGG 1 cut(s) 621
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 2 cut(s) 1101, 1107
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 4 cut(s) 511, 844, 1121, 1144
BstMAI GTCTC 6 cut(s) 353, 543, 830, 937, 957, 1084
BstMBI GATC 4 cut(s) 508, 841, 1118, 1141
BstMWI GCNNNNNNNGC 4 cut(s) 30, 338, 668, 854
BstNI CCWGG 3 cut(s) 673, 1056, 1095
BstPAI GACNNNNGTC 1 cut(s) 949
BstSCI CCNGG 3 cut(s) 671, 1054, 1093
BstUI CGCG 2 cut(s) 1101, 1107
BstV1I GCAGC 6 cut(s) 78, 188, 244, 316, 682, 835
BstV2I GAAGAC 2 cut(s) 1024, 1084
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 999
BtgZI GCGATG 3 cut(s) 277, 693, 845
BtrI CACGTC 1 cut(s) 1112
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 541, 963
Cac8I GCNNGC 1 cut(s) 1012
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 18, 571, 1067
CseI GACGC 2 cut(s) 1107, 1113
CviAII CATG 1 cut(s) 845
DdeI CTNAG 6 cut(s) 126, 342, 357, 432, 585, 862
DpnI GATC 4 cut(s) 510, 843, 1120, 1143
DpnII GATC 4 cut(s) 508, 841, 1118, 1141
DrdI GACNNNNNNGTC 1 cut(s) 967
DseDI GACNNNNNNGTC 1 cut(s) 967
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 3 cut(s) 375, 552, 930
EarI CTCTTC 3 cut(s) 375, 552, 930
Eco31I GGTCTC 2 cut(s) 543, 1084
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 3 cut(s) 18, 571, 1067
Eco57I CTGAAG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 656
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 3 cut(s) 671, 1054, 1093
EcoRV GATATC 1 cut(s) 715
FaeI CATG 1 cut(s) 848
FaiI YATR 5 cut(s) 485, 687, 846, 980, 986
FaqI GGGAC 4 cut(s) 31, 115, 557, 903
FatI CATG 1 cut(s) 844
FauI CCCGC 1 cut(s) 29
FbaI TGATCA 1 cut(s) 841
Fnu4HI GCNGC 8 cut(s) 92, 177, 233, 308, 330, 696, 849, 930
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 8 cut(s) 92, 177, 233, 308, 330, 696, 849, 930
FspBI CTAG 1 cut(s) 915
GlaI GCGC 1 cut(s) 42
GluI GCNGC 8 cut(s) 92, 177, 233, 308, 330, 696, 849, 930
GsaI CCCAGC 2 cut(s) 369, 671
GsuI CTGGAG 3 cut(s) 542, 717, 939
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 1 cut(s) 611
HgaI GACGC 2 cut(s) 1107, 1113
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 848
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 2 cut(s) 972, 1131
HindII GTYRAC 2 cut(s) 972, 1131
HinfI GANTC 6 cut(s) 128, 209, 253, 412, 422, 739
HphI GGTGA 5 cut(s) 611, 731, 952, 1015, 1038
Hpy166II GTNNAC 4 cut(s) 972, 1067, 1115, 1131
Hpy188I TCNGA 8 cut(s) 7, 99, 127, 208, 250, 472, 586, 799
Hpy188III TCNNGA 4 cut(s) 167, 617, 656, 734
Hpy8I GTNNAC 4 cut(s) 972, 1067, 1115, 1131
HpyAV CCTTC 6 cut(s) 8, 221, 367, 386, 430, 587
HpyCH4III ACNGT 2 cut(s) 399, 531
HpyCH4IV ACGT 2 cut(s) 103, 1111
HpyCH4V TGCA 2 cut(s) 773, 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 338, 668, 854
HpyF3I CTNAG 6 cut(s) 126, 342, 357, 432, 585, 862
HpySE526I ACGT 2 cut(s) 103, 1111
Hsp92II CATG 1 cut(s) 848
HspAI GCGC 1 cut(s) 41
KflI GGGWCCC 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 841
Kzo9I GATC 4 cut(s) 508, 841, 1118, 1141
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 2 cut(s) 500, 523
Lsp1109I GCAGC 6 cut(s) 78, 188, 244, 316, 682, 835
LweI GCATC 2 cut(s) 328, 760
MaeI CTAG 1 cut(s) 915
MaeII ACGT 2 cut(s) 103, 1111
MaeIII GTNAC 2 cut(s) 646, 958
MalI GATC 4 cut(s) 510, 843, 1120, 1143
MboI GATC 4 cut(s) 508, 841, 1118, 1141
MboII GAAGA 8 cut(s) 105, 362, 392, 569, 791, 947, 1029, 1089
MfeI CAATTG 1 cut(s) 807
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 3 cut(s) 159, 727, 807
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 2 cut(s) 137, 421
MnlI CCTC 9 cut(s) 130, 316, 539, 553, 652, 715, 871, 931, 1025
Mox20I TGGCCA 1 cut(s) 611
MscI TGGCCA 1 cut(s) 611
MseI TTAA 2 cut(s) 726, 744
Msp20I TGGCCA 1 cut(s) 611
MspA1I CMGCKG 4 cut(s) 91, 788, 890, 1073
MspR9I CCNGG 3 cut(s) 673, 1056, 1095
MunI CAATTG 1 cut(s) 807
Mva1269I GAATGC 1 cut(s) 1012
MvaI CCWGG 3 cut(s) 673, 1056, 1095
MvnI CGCG 2 cut(s) 1101, 1107
MwoI GCNNNNNNNGC 4 cut(s) 30, 338, 668, 854
NdeII GATC 4 cut(s) 508, 841, 1118, 1141
NlaIII CATG 1 cut(s) 848
NlaIV GGNNCC 5 cut(s) 19, 20, 502, 573, 796
NmuCI GTSAC 1 cut(s) 958
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 1012
PfeI GAWTC 4 cut(s) 209, 253, 422, 739
PflMI CCANNNNNTGG 1 cut(s) 1061
PkrI GCNGC 8 cut(s) 93, 178, 234, 309, 331, 697, 850, 931
PleI GAGTC 2 cut(s) 136, 420
PpsI GAGTC 2 cut(s) 136, 420
PpuMI RGGWCCY 1 cut(s) 18
PshAI GACNNNNGTC 1 cut(s) 949
Psp5II RGGWCCY 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 671, 1054, 1093
PspFI CCCAGC 2 cut(s) 365, 667
PspGI CCWGG 3 cut(s) 671, 1054, 1093
PspN4I GGNNCC 5 cut(s) 19, 20, 502, 573, 796
PspPI GGNCC 3 cut(s) 18, 571, 1067
PspPPI RGGWCCY 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 1073
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 726, 744
SatI GCNGC 8 cut(s) 92, 177, 233, 308, 330, 696, 849, 930
Sau3AI GATC 4 cut(s) 508, 841, 1118, 1141
Sau96I GGNCC 3 cut(s) 18, 571, 1067
SchI GAGTC 2 cut(s) 137, 421
ScrFI CCNGG 3 cut(s) 673, 1056, 1095
SfaNI GCATC 2 cut(s) 328, 760
SinI GGWCC 3 cut(s) 18, 571, 1067
SpeI ACTAGT 1 cut(s) 914
Sse9I AATT 3 cut(s) 159, 727, 807
SsiI CCGC 8 cut(s) 22, 89, 308, 786, 890, 929, 1101, 1107
SspMI CTAG 1 cut(s) 915
StyD4I CCNGG 3 cut(s) 671, 1054, 1093
TaaI ACNGT 2 cut(s) 399, 531
TaiI ACGT 2 cut(s) 106, 1114
TaqI TCGA 2 cut(s) 47, 410
TaqII GACCGA 1 cut(s) 567
TasI AATT 3 cut(s) 159, 727, 807
TauI GCSGC 2 cut(s) 310, 932
TfiI GAWTC 4 cut(s) 209, 253, 422, 739
Tru1I TTAA 2 cut(s) 726, 744
Tru9I TTAA 2 cut(s) 726, 744
TscAI CASTG 2 cut(s) 541, 963
TseFI GTSAC 1 cut(s) 958
TseI GCWGC 6 cut(s) 91, 176, 232, 329, 695, 848
Tsp45I GTSAC 1 cut(s) 958
TspDTI ATGAA 4 cut(s) 66, 105, 294, 405
TspGWI ACGGA 1 cut(s) 957
TspRI CASTG 2 cut(s) 541, 963
Van91I CCANNNNNTGG 1 cut(s) 1061
VpaK11BI GGWCC 3 cut(s) 18, 571, 1067
XagI CCTNNNNNAGG 1 cut(s) 621
XapI RAATTY 1 cut(s) 159
XspI CTAG 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.