pycom09g00980

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0003251
Physical Location & Seq
Forward (+)
744049 .. 744387
339 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00980.1

Sequence Viewer

Length: 339 bp
ATGATTGAATCCCTTCACACCTTTGTAAACTCTTCGCGAGTAGATGGAGTAGCATTAAAGTATTTTTCTTCAATGCAAAAAATTATTGTGGTACAACTTAATTATTTTTTGCAGAAGAAAGAACTGACGTCAAGCTTCTCCTTGAGAGTTCTCAGGTATTGTGATCATGGGATATTGTCCAAGGAAGTGCATGTTTGGTATTGTTGTTACTTGGTAATTTGTACTGCTATAAAATATGATAGAAAATATGAACTAATGTGGGAAGCTACAAGAAAGGCTGAAGACCAGGCTGCAGAACGAGTGAAATGTTTAGAGGAAGATCTGGCAAAGACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

113

Amino Acids

13.22

Weight (kDa)

8.59

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 131
AccII CGCG 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 2 cut(s) 93, 223
AgsI TTSAA 2 cut(s) 8, 72
AjnI CCWGG 2 cut(s) 285, 332
AluBI AGCT 2 cut(s) 135, 266
AluI AGCT 2 cut(s) 135, 266
ApeKI GCWGC 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 287, 334
BclI TGATCA 1 cut(s) 163
BfmI CTRYAG 1 cut(s) 291
BglII AGATCT 1 cut(s) 319
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 287, 334
BmrFI CCNGG 2 cut(s) 287, 334
BpiI GAAGAC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 287, 334
BseDI CCNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 37
Bsp143I GATC 2 cut(s) 163, 319
Bsp68I TCGCGA 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 163, 319
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 287, 334
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 152
BstFNI CGCG 1 cut(s) 37
BstKTI GATC 2 cut(s) 166, 322
BstMBI GATC 2 cut(s) 163, 319
BstNI CCWGG 2 cut(s) 287, 334
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 285, 332
BstSFI CTRYAG 1 cut(s) 291
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BtuMI TCGCGA 1 cut(s) 37
CsiI ACCWGGT 1 cut(s) 332
Csp6I GTAC 2 cut(s) 92, 222
CviAII CATG 2 cut(s) 167, 191
CviJI RGCY 4 cut(s) 135, 266, 278, 290
CviKI_1 RGCY 4 cut(s) 135, 266, 278, 290
CviQI GTAC 2 cut(s) 92, 222
DdeI CTNAG 1 cut(s) 152
DpnI GATC 2 cut(s) 165, 321
DpnII GATC 2 cut(s) 163, 319
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 285, 332
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 170, 194
FaiI YATR 5 cut(s) 168, 192, 230, 237, 249
FatI CATG 2 cut(s) 166, 190
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 2 cut(s) 170, 194
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 76, 112, 190, 293
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 2 cut(s) 170, 194
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 2 cut(s) 163, 319
LpnPI CCDG 5 cut(s) 139, 272, 299, 308, 319
Lsp1109I GCAGC 1 cut(s) 277
MabI ACCWGGT 1 cut(s) 332
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 165, 321
MboI GATC 2 cut(s) 163, 319
MboII GAAGA 5 cut(s) 24, 60, 127, 293, 329
MflI RGATCY 1 cut(s) 319
MluCI AATT 3 cut(s) 81, 100, 216
MnlI CCTC 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 56, 99
MspR9I CCNGG 2 cut(s) 287, 334
MvaI CCWGG 2 cut(s) 287, 334
MvnI CGCG 1 cut(s) 37
NdeII GATC 2 cut(s) 163, 319
NlaIII CATG 2 cut(s) 170, 194
NruI TCGCGA 1 cut(s) 37
NspI RCATGY 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 285, 332
PspGI CCWGG 2 cut(s) 285, 332
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 319
RruI TCGCGA 1 cut(s) 37
RsaI GTAC 2 cut(s) 93, 223
RsaNI GTAC 2 cut(s) 92, 222
SaqAI TTAA 2 cut(s) 56, 99
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 2 cut(s) 163, 319
ScrFI CCNGG 2 cut(s) 287, 334
SetI ASST 6 cut(s) 23, 131, 137, 158, 268, 338
SexAI ACCWGGT 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 3 cut(s) 81, 100, 216
StyD4I CCNGG 2 cut(s) 285, 332
StyI CCWWGG 1 cut(s) 180
TaiI ACGT 1 cut(s) 131
TasI AATT 3 cut(s) 81, 100, 216
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 56, 99
Tru9I TTAA 2 cut(s) 56, 99
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 264
XceI RCATGY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 12
ZraI GACGTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.