RLG00000032694

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003251
Physical Location & Seq
Reverse (-)
17913378 .. 17916373
2996 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032694

Sequence Viewer

Length: 1194 bp
ATGCCGCTCTTCGTCTCCGACGAGGAGTTCTCCGGCCACCGAGACGACGGCGCTTGGGTGGCGGAGAAGGCCGACGCGTTTATGCGGAACCTCTACACGGAGCTTGACACCGTCAAGGCGCAGAACGACGCCGCTTCGATCACCGCCGAGCAGACCTGCTCTCTCCTCGAGCAGAAGTACCTCTCCCTCTCCGATGAACACTCCAAGCGCGAGTCCGAACTCGCGCAGCTCAAGTCCTCGTTCGACGAGCGCCTCTCCGAACTCGCAGAAGTGCAGGCTCAGAAGTACCAGCTCAATTTACAATCCATTAATAAAGATAGTGAGATAGAGATGTTGAAGACGGAGGTGTCAGAGCTGCACAAATCGAAGAGGCAGTTAATGGAGATAGTGGAGCAAAAGGATGAGGATATTAGTGCAAAGAATTGCACCATCCAGTCTTATCTCGAGAAGATTGTCAAGTCGGCTGAGAATGCTGCCCAGAGGGAGGCCCGATTAAGTGAAGCTGAGGCAGAGTTAGCACGCACCAAGGATTCATGTACTCATCTTTCACAGGAGAAAGAACTTATCGAGAGGCATAATGTCTGGCTTAATAATGAGTTAGCAGCCAAAGTTGACAGTCTCATTAAGCTGCGTAGAACGCATGCCGATGTTGAGGCAGAGATGTCTTTTAAGCTTTCAGATCTCCTTACCTTAAATTGGAACAAAGAAAGAGTGAGGGAACTAGAAGCAAAGCTGACATCCTTGCAGGAGGAACTACGCTTATCGAAAGATACTGCAGCAGCTAATGAAGAGAGATCAAATGCCGAACTCTCAACGACAAATAAGGTTGTTGAACTATATAAGGAAAGTTCAGAGGAATGGTCCAAAAAGGCGGGAGAGCTTGAGGGCGTGATCAAAGCTCTGGAGTCACATTTGAGTCAAGTTGAAAATGATTACAAGGAGAGACTTGAAAGGGAAGTGTCTGCAAGAAATCAATTAGAAAAGGAGGCCGCAGATCTGAAGACAAAACTTGAGAAGTGCGAAGCAGAAATTGAAACTAGCAGGAAAGCAAATGAGCTGAGTCTTCTCCCACTTAATAGTTCTAGTCAGGATATGTATGTTCCTCTTTTATTCTATTTAAAATGCACTTTTATTAGGCCTCTTTTAGTCCACTGTTGTGCTGTGCAGAAATTGATCACTGAACTTTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

398

Amino Acids

45.42

Weight (kDa)

4.98

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoprot-TPR PF25481 170 - 252 1.5e-17 Nucleoprotein TPR-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 7
AccII CGCG 3 cut(s) 77, 210, 224
AciI CCGC 7 cut(s) 5, 62, 85, 132, 144, 872, 990
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 1019
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 3 cut(s) 179, 287, 538
AfiI CCNNNNNNNGG 3 cut(s) 97, 484, 696
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 5 cut(s) 337, 833, 926, 950, 1034
AleI CACNNNNGTG 1 cut(s) 1155
Alw26I GTCTC 4 cut(s) 19, 36, 623, 937
Ama87I CYCGRG 2 cut(s) 167, 443
AoxI GGCC 5 cut(s) 34, 69, 486, 987, 1136
ApeKI GCWGC 7 cut(s) 226, 355, 473, 602, 628, 776, 779
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 5 cut(s) 53, 121, 210, 226, 252
AspS9I GGNCC 2 cut(s) 487, 861
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 2 cut(s) 167, 443
AvaII GGWCC 1 cut(s) 861
BbsI GAAGAC 3 cut(s) 344, 1007, 1055
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 7 cut(s) 238, 342, 460, 614, 615, 788, 791
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 64
BclI TGATCA 2 cut(s) 891, 1173
BcoDI GTCTC 4 cut(s) 19, 36, 623, 937
BfaI CTAG 3 cut(s) 722, 1038, 1083
BfmI CTRYAG 1 cut(s) 774
BfoI RGCGCY 2 cut(s) 54, 253
BfuAI ACCTGC 1 cut(s) 164
BglII AGATCT 2 cut(s) 679, 994
Bme18I GGWCC 1 cut(s) 861
BmeT110I CYCGRG 2 cut(s) 167, 443
BmgT120I GGNCC 2 cut(s) 487, 861
BmiI GGNNCC 1 cut(s) 89
BpiI GAAGAC 3 cut(s) 344, 1007, 1055
BplI GAGNNNNNCTC 4 cut(s) 14, 46, 239, 271
BpmI CTGGAG 1 cut(s) 923
Bpu10I CCTNAGC 1 cut(s) 504
BpuEI CTTGAG 3 cut(s) 215, 902, 1031
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 525
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 484, 696
Bse1I ACTGG 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 3 cut(s) 406, 429, 737
BseLI CCNNNNNNNGG 3 cut(s) 97, 484, 696
BseMII CTCAG 4 cut(s) 293, 456, 495, 1049
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 2 cut(s) 38, 155
BseXI GCAGC 7 cut(s) 238, 342, 460, 614, 615, 788, 791
BsgI GTGCAG 3 cut(s) 293, 341, 1184
Bsh1236I CGCG 3 cut(s) 77, 210, 224
BshFI GGCC 5 cut(s) 36, 71, 488, 989, 1138
BsiHKCI CYCGRG 2 cut(s) 167, 443
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 3 cut(s) 97, 484, 696
BsmAI GTCTC 4 cut(s) 19, 36, 623, 937
BsmBI CGTCTC 2 cut(s) 19, 36
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 5 cut(s) 36, 71, 488, 989, 1138
BsoBI CYCGRG 2 cut(s) 167, 443
Bsp143I GATC 6 cut(s) 138, 679, 794, 891, 994, 1173
BspACI CCGC 7 cut(s) 5, 62, 85, 132, 144, 872, 990
BspANI GGCC 5 cut(s) 36, 71, 488, 989, 1138
BspCNI CTCAG 4 cut(s) 292, 457, 496, 1050
BspFNI CGCG 3 cut(s) 77, 210, 224
BspLI GGNNCC 1 cut(s) 89
BspMAI CTGCAG 1 cut(s) 778
BspMI ACCTGC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 6 cut(s) 138, 679, 794, 891, 994, 1173
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 525
Bst4CI ACNGT 3 cut(s) 112, 617, 1154
Bst6I CTCTTC 3 cut(s) 14, 362, 783
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 276, 520, 642
BstDEI CTNAG 4 cut(s) 279, 465, 504, 1058
BstF5I GGATG 3 cut(s) 406, 429, 737
BstFNI CGCG 3 cut(s) 77, 210, 224
BstH2I RGCGCY 2 cut(s) 54, 253
BstHHI GCGC 5 cut(s) 53, 121, 210, 226, 252
BstKTI GATC 6 cut(s) 141, 682, 797, 894, 997, 1176
BstMAI GTCTC 4 cut(s) 19, 36, 623, 937
BstMBI GATC 6 cut(s) 138, 679, 794, 891, 994, 1173
BstMWI GCNNNNNNNGC 5 cut(s) 59, 68, 470, 515, 637
BstNSI RCATGY 1 cut(s) 644
BstSFI CTRYAG 1 cut(s) 774
BstUI CGCG 3 cut(s) 77, 210, 224
BstV1I GCAGC 7 cut(s) 238, 342, 460, 614, 615, 788, 791
BstV2I GAAGAC 3 cut(s) 344, 1007, 1055
BstX2I RGATCY 2 cut(s) 679, 994
BstYI RGATCY 2 cut(s) 679, 994
BsuRI GGCC 5 cut(s) 36, 71, 488, 989, 1138
BtsCI GGATG 3 cut(s) 406, 429, 737
BtsIMutI CAGTG 2 cut(s) 1150, 1176
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 3 cut(s) 276, 520, 642
CfoI GCGC 5 cut(s) 53, 121, 210, 226, 252
Cfr13I GGNCC 2 cut(s) 487, 861
CseI GACGC 2 cut(s) 83, 137
Csp6I GTAC 3 cut(s) 178, 286, 537
CviAII CATG 2 cut(s) 534, 641
CviQI GTAC 3 cut(s) 178, 286, 537
DdeI CTNAG 4 cut(s) 279, 465, 504, 1058
DpnI GATC 6 cut(s) 140, 681, 796, 893, 996, 1175
DpnII GATC 6 cut(s) 138, 679, 794, 891, 994, 1173
DraI TTTAAA 1 cut(s) 1119
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 3 cut(s) 14, 362, 783
EarI CTCTTC 3 cut(s) 14, 362, 783
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 525
Eco147I AGGCCT 1 cut(s) 1138
Eco47I GGWCC 1 cut(s) 861
Eco57I CTGAAG 1 cut(s) 1019
Eco88I CYCGRG 2 cut(s) 167, 443
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
Esp3I CGTCTC 2 cut(s) 19, 36
FaeI CATG 2 cut(s) 537, 644
FaiI YATR 8 cut(s) 83, 535, 576, 642, 838, 840, 1094, 1098
FatI CATG 2 cut(s) 533, 640
FauI CCCGC 1 cut(s) 865
FbaI TGATCA 2 cut(s) 891, 1173
FokI GGATG 3 cut(s) 413, 416, 724
FspBI CTAG 3 cut(s) 722, 1038, 1083
GlaI GCGC 5 cut(s) 52, 120, 209, 225, 251
GsuI CTGGAG 1 cut(s) 923
HaeII RGCGCY 2 cut(s) 54, 253
HaeIII GGCC 5 cut(s) 36, 71, 488, 989, 1138
HapII CCGG 1 cut(s) 33
HgaI GACGC 2 cut(s) 83, 137
HhaI GCGC 5 cut(s) 53, 121, 210, 226, 252
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 537, 644
Hin6I GCGC 5 cut(s) 51, 119, 208, 224, 250
HinP1I GCGC 5 cut(s) 51, 119, 208, 224, 250
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 5 cut(s) 212, 530, 905, 916, 1060
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 613, 1150
Hpy188III TCNNGA 5 cut(s) 443, 445, 568, 902, 1088
Hpy8I GTNNAC 2 cut(s) 613, 1150
Hpy99I CGWCG 5 cut(s) 23, 50, 77, 131, 248
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 3 cut(s) 112, 617, 1154
HpyCH4V TGCA 9 cut(s) 274, 358, 416, 426, 745, 776, 965, 1125, 1165
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 68, 470, 515, 637
HpyF3I CTNAG 4 cut(s) 279, 465, 504, 1058
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 537, 644
HspAI GCGC 5 cut(s) 51, 119, 208, 224, 250
Ksp22I TGATCA 2 cut(s) 891, 1173
Kzo9I GATC 6 cut(s) 138, 679, 794, 891, 994, 1173
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 2 cut(s) 100, 391
Lsp1109I GCAGC 7 cut(s) 238, 342, 460, 614, 615, 788, 791
MaeI CTAG 3 cut(s) 722, 1038, 1083
MaeIII GTNAC 1 cut(s) 906
MalI GATC 6 cut(s) 140, 681, 796, 893, 996, 1175
MbiI CCGCTC 1 cut(s) 7
MboI GATC 6 cut(s) 138, 679, 794, 891, 994, 1173
MboII GAAGA 6 cut(s) 349, 379, 460, 800, 1012, 1055
MflI RGATCY 2 cut(s) 679, 994
MluCI AATT 6 cut(s) 295, 421, 694, 974, 1029, 1169
MluI ACGCGT 1 cut(s) 75
MlyI GAGTC 4 cut(s) 221, 914, 925, 1069
MmeI TCCRAC 1 cut(s) 42
MseI TTAA 9 cut(s) 309, 377, 494, 588, 624, 669, 692, 1074, 1118
MslI CAYNNNNRTG 2 cut(s) 645, 1155
MspI CCGG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 475
MvnI CGCG 3 cut(s) 77, 210, 224
MwoI GCNNNNNNNGC 5 cut(s) 59, 68, 470, 515, 637
NdeII GATC 6 cut(s) 138, 679, 794, 891, 994, 1173
NlaIII CATG 2 cut(s) 537, 644
NlaIV GGNNCC 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 906
NspI RCATGY 1 cut(s) 644
OliI CACNNNNGTG 1 cut(s) 1155
PaeI GCATGC 1 cut(s) 644
PaeR7I CTCGAG 2 cut(s) 167, 443
PceI AGGCCT 1 cut(s) 1138
PciSI GCTCTTC 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 1 cut(s) 530
PflFI GACNNNGTC 1 cut(s) 110
PleI GAGTC 4 cut(s) 220, 913, 924, 1068
PpsI GAGTC 4 cut(s) 220, 913, 924, 1068
PshBI ATTAAT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 2 cut(s) 487, 861
PspXI VCTCGAGB 1 cut(s) 167
PstI CTGCAG 1 cut(s) 778
PsuI RGATCY 2 cut(s) 679, 994
PsyI GACNNNGTC 1 cut(s) 110
RsaI GTAC 3 cut(s) 179, 287, 538
RsaNI GTAC 3 cut(s) 178, 286, 537
RseI CAYNNNNRTG 2 cut(s) 645, 1155
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 9 cut(s) 309, 377, 494, 588, 624, 669, 692, 1074, 1118
Sau3AI GATC 6 cut(s) 138, 679, 794, 891, 994, 1173
Sau96I GGNCC 2 cut(s) 487, 861
SchI GAGTC 4 cut(s) 221, 914, 925, 1069
SfcI CTRYAG 1 cut(s) 774
Sfr274I CTCGAG 2 cut(s) 167, 443
SinI GGWCC 1 cut(s) 861
SlaI CTCGAG 2 cut(s) 167, 443
SmiMI CAYNNNNRTG 2 cut(s) 645, 1155
SmlI CTYRAG 5 cut(s) 167, 230, 443, 881, 1010
SmoI CTYRAG 5 cut(s) 167, 230, 443, 881, 1010
SphI GCATGC 1 cut(s) 644
Sse9I AATT 6 cut(s) 295, 421, 694, 974, 1029, 1169
SseBI AGGCCT 1 cut(s) 1138
SsiI CCGC 7 cut(s) 5, 62, 85, 132, 144, 872, 990
SspMI CTAG 3 cut(s) 722, 1038, 1083
StuI AGGCCT 1 cut(s) 1138
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 3 cut(s) 112, 617, 1154
TaqI TCGA 7 cut(s) 137, 168, 243, 365, 444, 567, 764
TasI AATT 6 cut(s) 295, 421, 694, 974, 1029, 1169
TatI WGTACW 1 cut(s) 536
TauI GCSGC 3 cut(s) 7, 134, 992
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 9 cut(s) 309, 377, 494, 588, 624, 669, 692, 1074, 1118
Tru9I TTAA 9 cut(s) 309, 377, 494, 588, 624, 669, 692, 1074, 1118
TscAI CASTG 2 cut(s) 1157, 1183
TseFI GTSAC 1 cut(s) 906
TseI GCWGC 7 cut(s) 226, 355, 473, 602, 628, 776, 779
Tsp45I GTSAC 1 cut(s) 906
TspDTI ATGAA 3 cut(s) 210, 522, 801
TspGWI ACGGA 2 cut(s) 113, 356
TspRI CASTG 2 cut(s) 1157, 1183
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 861
VspI ATTAAT 1 cut(s) 309
XceI RCATGY 1 cut(s) 644
XhoI CTCGAG 2 cut(s) 167, 443
XspI CTAG 3 cut(s) 722, 1038, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.