Rh5AG163000

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003251
Physical Location & Seq
Reverse (-)
17478817 .. 17498805
19989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG163000.1

Sequence Viewer

Length: 6291 bp
ATGCCGCTCTTCGTCTCCGACGAGGAGTTCTCCGGCCACCGAGACGACGTCGCTTGGGTGGCGGAGAAGGCCGACGCGTTTATCCGGAACCTCTACACGGAGCTTGACACCGTCAAGGCGCAGAACGACGCCGCTTCGATCACCGCCGAGCAGACCTGCTCTCTCCTGGAGCAGAAGTACCTCTCCCTCTCCGATGAACACTCCAAGCTCGAGTCCGAACTCGCGCAGCTCAAGTCCTCGTTCGACGAGCGCCTCTCCGAGCTCGCCGAAGTGCAGTCTCAGAAGTACCAGCTCAATTTACAATCCATTAATAAAGATAGTGAGATAGAGATGTTGAAGACGGAGGTGTCAGAGCTGCACAAATCAAAGAGGCAGTTAATGGAGATAGTGGAGCAAAAGGATGAGGATATTAGTGCAAAGAATTGCACCATCCAGTCTTATCTCGAGAAGATTGTCAAGTCGGCTGAGAATGCTGCCCAGAGGGAGGCCCGATTAAGTGAAGCTGAGGCAGAGTTAGCACGCACCAAGGATTCATGCACTCATCTTTCACAGGAGAAAGAACTTATCGAGAGGCATAATGTCTGGCTTAATGATGAGTTAGCAGCCAAAGTTGACAGTCTCATTAAGCTGCGTAGAACGCATGCCGATGATGAGGCAGAGATGTCTTTTAAGCTTTCAGATGTTGAACGGAAATTCAATGACTGTTCTAGCTCCTTAAATTGGAACAAGGAAAGAGTGAGGGAATTAGAAGCAAAGCTGACATCCTTGCAGGAGGAACTACGCTTATCGAAAGATACTGCAGCAGCTAATGAAGAGAGATCAAATGCCGAACTCTCAACGACAAATAAGCTTGTTGAACTATATAAGGAAAGTTCAGAGGAATGGTCCAAAAAGGCGGGAGAGCTTGAGGGCGTGATCAAAGCTCTGGAGACGCATTTGAGTCAAGTTGAAAATGATTACAAGGAGAGACTTGAAGGGGAAGTGTCCGCAAGAAATCAATTTGAAAAGGAGGCTGCAGATCTGAAGACAAAACTTGAGAAGTGCGAAGCAGAAATTGAAACTAGCAGGAAAGCAAATGAGCTGAGTCTTCTCCCACTTAATAGTTCTGGTCAGGAAATGTGGTTGAATTCATTAGAATCTACTGACATGGCTGAGGTTGATCGTGCGGTGGTGCCGAAGATTCCTGTTGGTGTTTCAGGAACAGCATTAGCAGCTTCTCTTTTACGCGACGGGTGGAGTCTTGCAAAAATGTATGCGAAGTACCAAGAGGCGGTCGATGCTTTGCGTCATGAGCAGTTGGGAAGGAAGGAATCTGAGGCAATCTTGCAACGGGTTCTATATGAAATAGAAGAGAAAGCTGAAGTCATCATGGATGAAAGAGTGGAACATGAGAGAATGGCCGAGGCATATTCTATGATCAACCAGAAGTTGCAGGACTCAGTTTCTGAACAAGAATACTTAGAGAGAATGATCACGGAGTTAAAGGCTGACATAAGGAGGCATGAACGTGACTACTCCTTTGCCCAAAAAGAGATTGCTGATCTTCAGAGAGAGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCAGTTGTAGTGCACTCGGAATCTGATGCTGAAAAAGTCATATCTGAACATCTTTTGACCTTCAAGGACATAAATGGTCTGGTTCAGCAGAATGCCCAGCTCAGGAGTCTTGTTCGCAATCTTTCTGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACTGAGGAAGCTGCTTCTAGAGTTGAGGCTGTATTACAAAGAGCTGAAGAGCAAGGGCAAATGATTGAATCCCTTCACACCTCTGTCGCAATGTACAAAAGGTTGTATGAAGAGGAGCATAAACTTCGTTCGTCTGGTCCCCATTTAATAGAGGCTGCTCCAGAGGAAAGAAGAAGTGAGGTTAGGCATCTACTTGAGAGTTCTCAGGAAGCTAGCAGAAAGGCCCAAGACCATGCTGCAGTACGAGTGAAATGTCTAGAAGAAGATCTAGCGAAGATCAGGAGTGAGACAATATCATTGCGGTCAGAGCGTGACAAATTCGCTTCGGAAGCGAATATTGCTAGAGAGAAACTTGAGAGCTTTATGAAAGAATTTGAGCTTCAGAGGAACGAAACAAATGGTGTATTAGCAAGGAACATTGAGTTCTCTCAGTTAATAGTTGACTACCAGCGGAAGCTGCGTGAAGGTTCTGAGTCCGTGCAAACTGCTGAGGAGCTTTCTAGGAAGTTGACTATGGAGGTGTCTCTTTTGAAGCAAGAGAAGGAAATGCTGCAACATGCTGAGAAGAGAGCTTCGGATGAAGTTCGTAATTTGTCAGAGAGGGTTTATAGACTGCAGGCTAGTTTGGACACTATTCAGAGTACCCAGCAAGTTCGTGAGGAGGCAAGAGCTGCCGAGAGGAGAAAACAAGAAGAGTATACAGAACAAAAAGAGAGGGAGTGGGCTGATGCTAAAAGAGAATTGCAAGAAGAGAAAAATAATGCTCTCACTCTTGCACTTGACCGCGATCAGACCATAAAAAATGCCGTCAAACAGGTTGAAGAAATGAGAAAAGATTTGTCTAATGCACTTCATGCTGCTGCATCTGCTGAGAGTAGAGCTGCTGTAGCTGAGGCCAGACTGTCTGATCTGGAGAAAAAGAGTTCATCCTCAGATATCCAGGTTGTTGAGACTGACGGCGGGAGTGGATCTGCTTCTTTGACAGGCAATGAGGCTATGTTGGCATTACGTGCTGCAAAGGATGAGATTAAGAATTTGAAAGATGAAATGCAGGCTACTAAAGATCACATGCTACAGTATAAGAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGGCTGAAAAACTGAAGAAGTCTCGAGATGCTGAATTACTCTCTTTGAGAGGGAGGGTCTCTGAACTTGAAAATGAGATTATGTTGAAGTCCCAAGAAGTGGCTTCTGCAGCGGCAGGGAAGGAAGAAGCTCTATTCTCTGCTTTAGCAGAAATTTCAAGCCTAAAGGAAGAAACCACAGCAAAAACTTCTCAAACTGCTGCCCTGGAGATTCAGGTTTCTACTTTGAAGCAAGACTTGGAGAAAGAACATCAGCGATGGCGCACTGCTCAGGCTAATTATGAAAGACAGGTCATCCTTCAGTCAGAGACAATACAGGAGTTGACTAAAACATCACAAGCTTTGGCTGTGCTTCAGCAGGAAGCATCAGAGTTGCGTAAATTGGATGATGCACTCAAAAGTGAAAATGATGAACTGAAGTCCAGGTGGGAAGTTGATAAGGCAATGTTAGAGGAATCTGCTAGTATTGCTGAGAAGAAGTACAATGAAATCAATGAACAGAATAAAATACTGCATAGTCAACTGGAGGCTGTGCACATTCAATTGGCCGAGAGAGATCGTGGTTCATTTGGAACAACTTCTGGAAGCACTGGAGCAGATACTTCAGGTGATGCTGGTTTACAAACTGTGATAAGTTATCTTCGACGTACAAAAGAGATTGCAGAGACAGAGATATCCTTATTGAAACAAGAAAAACTACGATTGCAATCACAACTTGAGAGTGCCCTCAAGGCTTCAGAAACAGCCCAAGCATCACTTCGTGCTGAGCGTGCAAGTTCAAGGTCAATGTTGTTCTCAGAGGAGGAACTAAAATCCTTACAACTACAGGTTAGAGAAATAAACTTGCTCCGCGAAAGTAATATCCAACTGAGAGAAGAAAATAAACACAATTTTGAGGAATGCCAGAAATTGCATGAAATATCACAAAAGGCCAGTGTTGAGCGTCACAACCTAGAGAGGCTGTTAAGGGATAGACAGATTGAGGTGGAGGCATGTAAAAAAGACATTGAAATGCAAAAGATGGAGAAAGATCACTTGGAAAAGAGGCTTAGTGAGTTACTTGAAAGGTATAGAAATATAGATGTTGAAGATTATGATCGCACAAAGGCTGAACATCAGCAGATGCAGGTAACATTGAAGGAGAAGGATTCTCATATAGAAGAAGTCAAGAAACTTCTTTCGGAGAAGCTGGAGATTGTTTTGTCTTTAGAAAAAGATCTTGCAAACTTCAGATCGGAACTGACTGAGAGGGATAGGAGGATAAATGACATGTTGCCAGCGGAGGCAATTTTAAAATCAGATGTGGAGAAGCAAAGAAGAATTGGCCTTCAGTTTAAGAGGAAGTATGAGACATGCTTAAAGGAAAAGGAGGATCTTCAAAGACAAAAGGAGGATCTTCAAAGGCAAAAGGACGACCTTCAAAGGCAATGCGACGACCTTCAAAGGCAAAGGGATGACCTTATAAGGCAGTTGGAGGAAAAACAAGCGAAACGATCTTCTGGTGATCCTGCTGGGGAGCATGCCCTTAAAGAAGAGAAAGACCAAAAAATTCAGACACTGCAAAAAATGATGGAGAGGCAGAAAGAGGCAATGGAGAGGCAGAAAGAGGACCTACGAAATGAGAAAGCAAACCGCAAGAAGACTGAGAATGCTTTATTGGAATCTCTTAATAAAATTGAGCAGGACAAAATAATCTTCAAGAATGAGCTGGAGAAGCATAAGCTGGCTGTCAGGCAGCTTTCAGATGAGCAGGAAAAGCTGAAGCATGCAAAAGATGGTCTTCCTGAGGGTGCCTCAGTTGTTCAACATCTTTCTGGAGCCATACTGGATGATCGAGCCTCTGCTTACTTCTTGGTTTGTGAAAATTATGAAAGGGTAGCACATTCAACTTTGAATGAGCTTGGAGCTGGTGGTGTTCCTGCAGACACTCCAGTTGCAGATGCTTCATTAGCTGCTACTTCTGCTCCTGCTCCAGCAGCCACCCTTGCATCCTCAATGACTCCTACGGCAGTTATGCCATCCAAAGCAACAGATGAAACTGAAAGGAGGTTCACTTTTCCCAAAAGAAACGTTGAACCTCGTAAAACAGGGAGGAAATTGGTTCGGCCCCGTCTTGTAAGACCTGAGGAACCACAAGGTGATGTAGAGATGTCAGAGACGGAAGGGGCTCAGACTTTGAATAAACATGCAGCTTCCACTGACGCCGAAGTTCAGGGTGTTGCTACTTCGACACAACCACTGTTTCGAAAACGTCAAGCTTCTTCATCTCAGTTTGAGTCTCACGAGGAATCAATGAACCAAGGGGAAGCTGGTCCTGATGTGGCAGCACCTGTGTCAAAGAAGCCCAAAGGTTCAGAATCTCCTCAAAAGAGTGAAGGGCAAACACCTGCTTCATTGGAAAATCTTGGCAATGTTCCAGCCACAGAAGAAGCTTCTAATGCTGATAATCCTGAAGGTTCAAATGAGGAAGGTGCTGTTGATGCTGAGAAGGAAGAGATTGAGAATACCGCGGTGAAGGTTGAAGAGCCAATTGAACAACAATTTGATGGTTCAAGTCAACCTGAATCACAACATGACAAGAATAGTGTTTTGGAAGAAGATGTGGATGGATCAGATGTTAAAGAGATGGTGCCCGATGATGGAGCAAAGGATAATCTGGTGGAGCCTGACAACCGACAGTCCAGTGGAGTTGGGGGAGACAGAGAAGAGGGAGAGCTTCCACCTGATGTATCAGACCTTGAAGGTGGTGATACAACGATGGGCAGTCCTGGTATAGAGGAAGGTCAGTCGGAGCCTATTACGACACCCAGAGCTTCACCATCTAGGGTTGATGATGAAGATCTTGCTGGCGCTTCTGTTGTGGATGTTAGTGAGGTGAATTCTCCAGAAGTTCTTAATGAAGTTGATGTACCTGAAGAGACAGCTGAAGCCTCTGATAAGTCAAATGATGGTATCGATCAAACTGCAATGGAGACTGACCTCACTGTTGAAGCTGCCTCTGTAGCTGGTGATGCCTCTATAACCGCTGAGAGTACCTCTGCAAGTACTACTACAGAGGCTAGTGGTTCAAGACAGGCCAGTGCTAGTGTCACCACTGAAGCAGAAGAGGCAAAGCAGGTTTCTCCTGCCTCTACCACCATAAATATAACTGAACAAGCTAGGCGGAATGCTGAGCTAAGACAGCGTGGACAGCAGGGACGACAACCAATTGTTGTACCTCCGACCCCAACTAGAGGTCGTGGAAGACCAGCACAGCGTGGACGTGCACGTGCTGTGCGTCGTCCTGTCCGTGGACGTGGCCCCACATCTGGTGATCAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

2096

Amino Acids

236.24

Weight (kDa)

5.01

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoprot-TPR PF25481 170 - 249 1.4e-26 Nucleoprotein TPR-like domain
TPR PF25785 491 - 593 5.1e-29 Nucleoprotein TPR-like domain
TPR_MLP1_2 PF07926 1040 - 1167 3.5e-26 TPR/MLP1/MLP2-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4430
AarI CACCTGC 1 cut(s) 5362
AasI GACNNNNNNGTC 1 cut(s) 346
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 4 cut(s) 164, 4084, 5362, 6073
AccB1I GGYRCC 3 cut(s) 1171, 4757, 5596
AccB7I CCANNNNNTGG 1 cut(s) 3067
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 2516
AccII CGCG 6 cut(s) 77, 224, 1227, 2604, 3819, 5477
AccIII TCCGGA 1 cut(s) 84
AclI AACGTT 1 cut(s) 5037
AclWI GGATC 5 cut(s) 2794, 4347, 4368, 4466, 5584
AcoI YGGCCR 3 cut(s) 34, 1398, 3513
AcvI CACGTG 1 cut(s) 6236
AcyI GRCGYC 3 cut(s) 48, 129, 5169
AdeI CACNNNGTG 3 cut(s) 3728, 5105, 6224
AflIII ACRYGT 2 cut(s) 75, 4236
AjiI CACGTC 2 cut(s) 6230, 6263
AjnI CCWGG 5 cut(s) 165, 2757, 3171, 3389, 5734
AloI GAACNNNNNNTCC 2 cut(s) 1766, 1798
Alw21I GWGCWC 5 cut(s) 264, 1644, 1809, 3504, 6235
Alw44I GTGCAC 3 cut(s) 1640, 3500, 6231
AlwI GGATC 5 cut(s) 2794, 4347, 4368, 4466, 5584
AlwNI CAGNNNCTG 3 cut(s) 1445, 4525, 5297
Ama87I CYCGRG 3 cut(s) 209, 443, 2991
Aor13HI TCCGGA 1 cut(s) 84
ApaLI GTGCAC 3 cut(s) 1640, 3500, 6231
ArsI GACNNNNNNTTYG 2 cut(s) 1502, 1534
AseI ATTAAT 1 cut(s) 309
Asp700I GAANNNNTTC 2 cut(s) 1890, 3544
AspLEI GCGC 5 cut(s) 121, 226, 252, 3231, 5819
AspS9I GGNCC 8 cut(s) 487, 885, 1955, 2041, 4576, 5073, 5279, 6266
AsuII TTCGAA 1 cut(s) 5212
AsuNHI GCTAGC 1 cut(s) 2030
AvaI CYCGRG 3 cut(s) 209, 443, 2991
AvaII GGWCC 4 cut(s) 885, 1955, 4576, 5279
AxyI CCTNAGG 2 cut(s) 4752, 5091
BaeGI GKGCMC 5 cut(s) 1644, 3504, 3694, 5601, 6235
BanI GGYRCC 3 cut(s) 1171, 4757, 5596
BanII GRGCYC 3 cut(s) 264, 1809, 5137
BarI GAAGNNNNNNTAC 2 cut(s) 5859, 5891
BauI CACGAG 1 cut(s) 5249
BbrPI CACGTG 1 cut(s) 6236
BbsI GAAGAC 6 cut(s) 344, 1031, 1079, 4613, 4739, 6217
Bbv12I GWGCWC 5 cut(s) 264, 1644, 1809, 3504, 6235
BbvCI CCTCAGC 4 cut(s) 504, 1152, 2307, 2709
BceAI ACGGC 3 cut(s) 2609, 2791, 4989
BcgI CGANNNNNNTGC 4 cut(s) 1925, 1959, 5912, 5946
BciT130I CCWGG 5 cut(s) 167, 2759, 3173, 3391, 5736
BclI TGATCA 4 cut(s) 915, 1416, 1470, 6280
BfoI RGCGCY 2 cut(s) 253, 5820
BfuAI ACCTGC 4 cut(s) 164, 4084, 5362, 6073
BglI GCCNNNNNGGC 1 cut(s) 3698
BglII AGATCT 4 cut(s) 1018, 2083, 4183, 5806
BlpI GCTNAGC 2 cut(s) 3732, 6138
BmcAI AGTACT 1 cut(s) 6013
Bme1390I CCNGG 5 cut(s) 167, 2759, 3173, 3391, 5736
Bme18I GGWCC 4 cut(s) 885, 1955, 4576, 5279
BmeT110I CYCGRG 3 cut(s) 209, 443, 2991
BmgBI CACGTC 2 cut(s) 6230, 6263
BmgT120I GGNCC 8 cut(s) 487, 885, 1955, 2041, 4576, 5073, 5279, 6266
BmrFI CCNGG 5 cut(s) 167, 2759, 3173, 3391, 5736
BmtI GCTAGC 1 cut(s) 2034
BpiI GAAGAC 6 cut(s) 344, 1031, 1079, 4613, 4739, 6217
Bpu10I CCTNAGC 7 cut(s) 504, 1152, 1730, 2307, 2709, 2910, 3237
Bpu1102I GCTNAGC 2 cut(s) 3732, 6138
Bpu14I TTCGAA 1 cut(s) 5212
BpuEI CTTGAG 8 cut(s) 215, 926, 1055, 1793, 2033, 2192, 3680, 3704
Bsa29I ATCGAT 1 cut(s) 5922
BsaAI YACGTR 2 cut(s) 2828, 6236
BsaBI GATNNNNATC 3 cut(s) 3673, 4062, 5805
BsaHI GRCGYC 3 cut(s) 48, 129, 5169
BsaI GGTCTC 1 cut(s) 3031
BsaJI CCNNGG 6 cut(s) 525, 1401, 3171, 5266, 5475, 6256
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 4915, 4945
Bse1I ACTGG 8 cut(s) 433, 3495, 3562, 3900, 4797, 4898, 5649, 6045
Bse21I CCTNAGG 2 cut(s) 4752, 5091
Bse3DI GCAATG 8 cut(s) 1914, 2114, 2812, 3417, 4400, 4563, 5383, 5940
Bse8I GATNNNNATC 3 cut(s) 3673, 4062, 5805
BseAI TCCGGA 1 cut(s) 84
BseBI CCWGG 5 cut(s) 167, 2759, 3173, 3391, 5736
BseCI ATCGAT 1 cut(s) 5922
BseDI CCNNGG 6 cut(s) 525, 1401, 3171, 5266, 5475, 6256
BseJI GATNNNNATC 3 cut(s) 3673, 4062, 5805
BseMI GCAATG 8 cut(s) 1914, 2114, 2812, 3417, 4400, 4563, 5383, 5940
BseNI ACTGG 8 cut(s) 433, 3495, 3562, 3900, 4797, 4898, 5649, 6045
BseRI GAGGAG 7 cut(s) 38, 1946, 2324, 2492, 2512, 3782, 5319
BseSI GKGCMC 5 cut(s) 1644, 3504, 3694, 5601, 6235
BseYI CCCAGC 3 cut(s) 1725, 2463, 4478
BsgI GTGCAG 2 cut(s) 293, 341
Bsh1236I CGCG 6 cut(s) 77, 224, 1227, 2604, 3819, 5477
Bsh1285I CGRYCG 1 cut(s) 1275
BshNI GGYRCC 3 cut(s) 1171, 4757, 5596
BshVI ATCGAT 1 cut(s) 5922
BsiEI CGRYCG 1 cut(s) 1275
BsiHKAI GWGCWC 5 cut(s) 264, 1644, 1809, 3504, 6235
BsiHKCI CYCGRG 3 cut(s) 209, 443, 2991
BsiSI CCGG 2 cut(s) 33, 85
BslFI GGGAC 3 cut(s) 1941, 3043, 6177
BsmBI CGTCTC 4 cut(s) 19, 36, 923, 5117
BsmFI GGGAC 3 cut(s) 1941, 3043, 6177
BsmI GAATGC 5 cut(s) 475, 1726, 3872, 4621, 6139
Bso31I GGTCTC 1 cut(s) 3031
BsoBI CYCGRG 3 cut(s) 209, 443, 2991
Bsp119I TTCGAA 1 cut(s) 5212
Bsp1286I GDGCHC 8 cut(s) 264, 1644, 1809, 3504, 3694, 5137, 5601, 6235
Bsp13I TCCGGA 1 cut(s) 84
Bsp1407I TGTACA 1 cut(s) 1911
Bsp1720I GCTNAGC 2 cut(s) 3732, 6138
BspDI ATCGAT 1 cut(s) 5922
BspEI TCCGGA 1 cut(s) 84
BspFNI CGCG 6 cut(s) 77, 224, 1227, 2604, 3819, 5477
BspHI TCATGA 2 cut(s) 1288, 1612
BspMAI CTGCAG 6 cut(s) 802, 1018, 2059, 2436, 3079, 4891
BspMI ACCTGC 4 cut(s) 164, 4084, 5362, 6073
BspOI GCTAGC 1 cut(s) 2034
BspPI GGATC 5 cut(s) 2794, 4347, 4368, 4466, 5584
BspQI GCTCTTC 3 cut(s) 14, 1860, 5484
BspT104I TTCGAA 1 cut(s) 5212
BspT107I GGYRCC 3 cut(s) 1171, 4757, 5596
BspTNI GGTCTC 1 cut(s) 3031
BsrBI CCGCTC 1 cut(s) 7
BsrDI GCAATG 8 cut(s) 1914, 2114, 2812, 3417, 4400, 4563, 5383, 5940
BsrGI TGTACA 1 cut(s) 1911
BsrI ACTGG 8 cut(s) 433, 3495, 3562, 3900, 4797, 4898, 5649, 6045
BssECI CCNNGG 6 cut(s) 525, 1401, 3171, 5266, 5475, 6256
BssNAI GTATAC 1 cut(s) 2517
BssNI GRCGYC 3 cut(s) 48, 129, 5169
BssSI CACGAG 1 cut(s) 5249
BssT1I CCWWGG 2 cut(s) 525, 5266
Bst1107I GTATAC 1 cut(s) 2517
Bst2BI CACGAG 1 cut(s) 5249
Bst2UI CCWGG 5 cut(s) 167, 2759, 3173, 3391, 5736
Bst4CI ACNGT 9 cut(s) 112, 617, 704, 2721, 2895, 3595, 5208, 5646, 5953
BstACI GRCGYC 3 cut(s) 48, 129, 5169
BstAPI GCANNNNNTGC 3 cut(s) 2489, 2672, 2828
BstAUI TGTACA 1 cut(s) 1911
BstBAI YACGTR 2 cut(s) 2828, 6236
BstBI TTCGAA 1 cut(s) 5212
BstDSI CCRYGG 2 cut(s) 5475, 6256
BstFNI CGCG 6 cut(s) 77, 224, 1227, 2604, 3819, 5477
BstH2I RGCGCY 2 cut(s) 253, 5820
BstHHI GCGC 5 cut(s) 121, 226, 252, 3231, 5819
BstMCI CGRYCG 1 cut(s) 1275
BstNI CCWGG 5 cut(s) 167, 2759, 3173, 3391, 5736
BstNSI RCATGY 9 cut(s) 644, 2378, 2890, 3963, 4240, 4323, 4490, 4736, 5156
BstSCI CCNGG 5 cut(s) 165, 2757, 3171, 3389, 5734
BstSLI GKGCMC 5 cut(s) 1644, 3504, 3694, 5601, 6235
BstUI CGCG 6 cut(s) 77, 224, 1227, 2604, 3819, 5477
BstV2I GAAGAC 6 cut(s) 344, 1031, 1079, 4613, 4739, 6217
BstX2I RGATCY 7 cut(s) 1018, 2083, 2786, 4183, 4339, 4360, 5806
BstYI RGATCY 7 cut(s) 1018, 2083, 2786, 4183, 4339, 4360, 5806
BstZ17I GTATAC 1 cut(s) 2517
Bsu15I ATCGAT 1 cut(s) 5922
Bsu36I CCTNAGG 2 cut(s) 4752, 5091
BsuTUI ATCGAT 1 cut(s) 5922
BtgI CCRYGG 2 cut(s) 5475, 6256
BtgZI GCGATG 1 cut(s) 3238
BtrI CACGTC 2 cut(s) 6230, 6263
BtsI GCAGTG 2 cut(s) 3231, 4523
BveI ACCTGC 4 cut(s) 164, 4084, 5362, 6073
CaiI CAGNNNCTG 3 cut(s) 1445, 4525, 5297
CciI TCATGA 2 cut(s) 1288, 1612
CfoI GCGC 5 cut(s) 121, 226, 252, 3231, 5819
Cfr13I GGNCC 8 cut(s) 487, 885, 1955, 2041, 4576, 5073, 5279, 6266
Cfr42I CCGCGG 1 cut(s) 5478
ClaI ATCGAT 1 cut(s) 5922
CseI GACGC 7 cut(s) 83, 137, 940, 1274, 3899, 5177, 6233
DraI TTTAAA 1 cut(s) 4260
DraIII CACNNNGTG 3 cut(s) 3728, 5105, 6224
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 3 cut(s) 34, 1398, 3513
EciI GGCGGA 2 cut(s) 77, 6145
Ecl136II GAGCTC 2 cut(s) 262, 1807
Eco130I CCWWGG 2 cut(s) 525, 5266
Eco24I GRGCYC 3 cut(s) 264, 1809, 5137
Eco31I GGTCTC 1 cut(s) 3031
Eco32I GATATC 2 cut(s) 2755, 3642
Eco47I GGWCC 4 cut(s) 885, 1955, 4576, 5279
Eco53kI GAGCTC 2 cut(s) 262, 1807
Eco72I CACGTG 1 cut(s) 6236
Eco81I CCTNAGG 2 cut(s) 4752, 5091
Eco88I CYCGRG 3 cut(s) 209, 443, 2991
EcoICRI GAGCTC 2 cut(s) 262, 1807
EcoO109I RGGNCCY 1 cut(s) 4576
EcoRI GAATTC 2 cut(s) 1126, 5845
EcoRII CCWGG 5 cut(s) 165, 2757, 3171, 3389, 5734
EcoRV GATATC 2 cut(s) 2755, 3642
EcoT14I CCWWGG 2 cut(s) 525, 5266
EcoT22I ATGCAT 1 cut(s) 2929
EcoT38I GRGCYC 3 cut(s) 264, 1809, 5137
ErhI CCWWGG 2 cut(s) 525, 5266
Esp3I CGTCTC 4 cut(s) 19, 36, 923, 5117
FalI AAGNNNNNCTT 6 cut(s) 3188, 3220, 3708, 3740, 4731, 4763
FaqI GGGAC 3 cut(s) 1941, 3043, 6177
FauI CCCGC 2 cut(s) 889, 2771
FbaI TGATCA 4 cut(s) 915, 1416, 1470, 6280
FblI GTMKAC 1 cut(s) 2516
FriOI GRGCYC 3 cut(s) 264, 1809, 5137
GlaI GCGC 5 cut(s) 120, 225, 251, 3230, 5818
GsaI CCCAGC 3 cut(s) 1729, 2467, 4482
HaeII RGCGCY 2 cut(s) 253, 5820
HapII CCGG 2 cut(s) 33, 85
HgaI GACGC 7 cut(s) 83, 137, 940, 1274, 3899, 5177, 6233
HhaI GCGC 5 cut(s) 121, 226, 252, 3231, 5819
Hin1I GRCGYC 3 cut(s) 48, 129, 5169
Hin6I GCGC 5 cut(s) 119, 224, 250, 3229, 5817
HinP1I GCGC 5 cut(s) 119, 224, 250, 3229, 5817
HincII GTYRAC 6 cut(s) 613, 2260, 2328, 3291, 3488, 5525
HindII GTYRAC 6 cut(s) 613, 2260, 2328, 3291, 3488, 5525
HindIII AAGCTT 5 cut(s) 671, 848, 3306, 5223, 5397
HpaII CCGG 2 cut(s) 33, 85
HpyCH4III ACNGT 9 cut(s) 112, 617, 704, 2721, 2895, 3595, 5208, 5646, 5953
HpyCH4IV ACGT 9 cut(s) 48, 1507, 2827, 3613, 5037, 5218, 6229, 6235, 6262
HpySE526I ACGT 9 cut(s) 48, 1507, 2827, 3613, 5037, 5218, 6229, 6235, 6262
Hsp92I GRCGYC 3 cut(s) 48, 129, 5169
HspAI GCGC 5 cut(s) 119, 224, 250, 3229, 5817
Kpn2I TCCGGA 1 cut(s) 84
Ksp22I TGATCA 4 cut(s) 915, 1416, 1470, 6280
KspI CCGCGG 1 cut(s) 5478
LguI GCTCTTC 3 cut(s) 14, 1860, 5484
MaeII ACGT 9 cut(s) 48, 1507, 2827, 3613, 5037, 5218, 6229, 6235, 6262
MaeIII GTNAC 6 cut(s) 1508, 2129, 3911, 4023, 4096, 6055
MbiI CCGCTC 1 cut(s) 7
MfeI CAATTG 3 cut(s) 3509, 5496, 6174
MflI RGATCY 7 cut(s) 1018, 2083, 2786, 4183, 4339, 4360, 5806
MhlI GDGCHC 8 cut(s) 264, 1644, 1809, 3504, 3694, 5137, 5601, 6235
MluI ACGCGT 1 cut(s) 75
MlyI GAGTC 9 cut(s) 221, 949, 1093, 1246, 1430, 1744, 2300, 4960, 5252
MmeI TCCRAC 5 cut(s) 42, 3856, 4419, 5736, 6212
Mph1103I ATGCAT 1 cut(s) 2929
MroI TCCGGA 1 cut(s) 84
MroXI GAANNNNTTC 2 cut(s) 1890, 3544
MslI CAYNNNNRTG 3 cut(s) 645, 1506, 3977
MspA1I CMGCKG 6 cut(s) 2269, 3080, 4247, 5477, 5891, 5993
MspI CCGG 2 cut(s) 33, 85
MspR9I CCNGG 5 cut(s) 167, 2759, 3173, 3391, 5736
MunI CAATTG 3 cut(s) 3509, 5496, 6174
Mva1269I GAATGC 5 cut(s) 475, 1726, 3872, 4621, 6139
MvaI CCWGG 5 cut(s) 167, 2759, 3173, 3391, 5736
MvnI CGCG 6 cut(s) 77, 224, 1227, 2604, 3819, 5477
NheI GCTAGC 1 cut(s) 2030
NmeAIII GCCGAG 4 cut(s) 172, 1426, 2518, 3541
NmuCI GTSAC 4 cut(s) 1508, 2129, 3911, 6055
NsiI ATGCAT 1 cut(s) 2929
NspI RCATGY 9 cut(s) 644, 2378, 2890, 3963, 4240, 4323, 4490, 4736, 5156
NspV TTCGAA 1 cut(s) 5212
PaeI GCATGC 3 cut(s) 644, 4490, 4736
PaeR7I CTCGAG 3 cut(s) 209, 443, 2991
PagI TCATGA 2 cut(s) 1288, 1612
PaqCI CACCTGC 1 cut(s) 5362
PciI ACATGT 1 cut(s) 4236
PciSI GCTCTTC 3 cut(s) 14, 1860, 5484
PcsI WCGNNNNNNNCGW 4 cut(s) 18, 3733, 6241, 6253
PctI GAATGC 5 cut(s) 475, 1726, 3872, 4621, 6139
PdmI GAANNNNTTC 2 cut(s) 1890, 3544
PflFI GACNNNGTC 2 cut(s) 47, 110
PflMI CCANNNNNTGG 1 cut(s) 3067
PfoI TCCNGGA 1 cut(s) 165
PleI GAGTC 9 cut(s) 220, 948, 1092, 1245, 1430, 1743, 2299, 4960, 5251
PmaCI CACGTG 1 cut(s) 6236
PmlI CACGTG 1 cut(s) 6236
PpsI GAGTC 9 cut(s) 220, 948, 1092, 1245, 1430, 1743, 2299, 4960, 5251
Ppu21I YACGTR 2 cut(s) 2828, 6236
PpuMI RGGWCCY 1 cut(s) 4576
PscI ACATGT 1 cut(s) 4236
PshBI ATTAAT 1 cut(s) 309
PsiI TTATAA 1 cut(s) 4430
Psp124BI GAGCTC 2 cut(s) 264, 1809
Psp1406I AACGTT 1 cut(s) 5037
Psp5II RGGWCCY 1 cut(s) 4576
Psp6I CCWGG 5 cut(s) 165, 2757, 3171, 3389, 5734
PspCI CACGTG 1 cut(s) 6236
PspFI CCCAGC 3 cut(s) 1725, 2463, 4478
PspGI CCWGG 5 cut(s) 165, 2757, 3171, 3389, 5734
PspPI GGNCC 8 cut(s) 487, 885, 1955, 2041, 4576, 5073, 5279, 6266
PspPPI RGGWCCY 1 cut(s) 4576
PspXI VCTCGAGB 1 cut(s) 209
PstI CTGCAG 6 cut(s) 802, 1018, 2059, 2436, 3079, 4891
PstNI CAGNNNCTG 3 cut(s) 1445, 4525, 5297
PsuI RGATCY 7 cut(s) 1018, 2083, 2786, 4183, 4339, 4360, 5806
PsyI GACNNNGTC 2 cut(s) 47, 110
PvuII CAGCTG 1 cut(s) 5891
RseI CAYNNNNRTG 3 cut(s) 645, 1506, 3977
SacI GAGCTC 2 cut(s) 264, 1809
SacII CCGCGG 1 cut(s) 5478
SapI GCTCTTC 3 cut(s) 14, 1860, 5484
Sau96I GGNCC 8 cut(s) 487, 885, 1955, 2041, 4576, 5073, 5279, 6266
ScaI AGTACT 1 cut(s) 6013
SchI GAGTC 9 cut(s) 221, 949, 1093, 1246, 1430, 1744, 2300, 4960, 5252
ScrFI CCNGG 5 cut(s) 167, 2759, 3173, 3391, 5736
SduI GDGCHC 8 cut(s) 264, 1644, 1809, 3504, 3694, 5137, 5601, 6235
Sfr274I CTCGAG 3 cut(s) 209, 443, 2991
Sfr303I CCGCGG 1 cut(s) 5478
SfuI TTCGAA 1 cut(s) 5212
SgrBI CCGCGG 1 cut(s) 5478
SinI GGWCC 4 cut(s) 885, 1955, 4576, 5279
SlaI CTCGAG 3 cut(s) 209, 443, 2991
SmiMI CAYNNNNRTG 3 cut(s) 645, 1506, 3977
SphI GCATGC 3 cut(s) 644, 4490, 4736
SspI AATATT 1 cut(s) 2155
SstI GAGCTC 2 cut(s) 264, 1809
StyD4I CCNGG 5 cut(s) 165, 2757, 3171, 3389, 5734
StyI CCWWGG 2 cut(s) 525, 5266
TaaI ACNGT 9 cut(s) 112, 617, 704, 2721, 2895, 3595, 5208, 5646, 5953
TaiI ACGT 9 cut(s) 51, 1510, 2830, 3616, 5040, 5221, 6232, 6238, 6265
TatI WGTACW 3 cut(s) 1911, 3447, 6011
TauI GCSGC 3 cut(s) 7, 134, 3083
TseFI GTSAC 4 cut(s) 1508, 2129, 3911, 6055
Tsp45I GTSAC 4 cut(s) 1508, 2129, 3911, 6055
TspGWI ACGGA 7 cut(s) 113, 356, 703, 1490, 2284, 5141, 6245
Tth111I GACNNNGTC 2 cut(s) 47, 110
Van91I CCANNNNNTGG 1 cut(s) 3067
VneI GTGCAC 3 cut(s) 1640, 3500, 6231
VpaK11BI GGWCC 4 cut(s) 885, 1955, 4576, 5279
VspI ATTAAT 1 cut(s) 309
XbaI TCTAGA 2 cut(s) 1835, 2074
XceI RCATGY 9 cut(s) 644, 2378, 2890, 3963, 4240, 4323, 4490, 4736, 5156
XcmI CCANNNNNNNNNTGG 1 cut(s) 5273
XhoI CTCGAG 3 cut(s) 209, 443, 2991
XmiI GTMKAC 1 cut(s) 2516
XmnI GAANNNNTTC 2 cut(s) 1890, 3544
ZraI GACGTC 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 6013
Zsp2I ATGCAT 1 cut(s) 2929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.