Rorug05G0076700

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003251
Physical Location & Seq
Reverse (-)
6578646 .. 6579913
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0076700.1

Sequence Viewer

Length: 1038 bp
ATGGCTTTTGAACGAGTTAACCTTGTGATTGTTACTACACTGGTCACCATGGGAGTTTTGGCTTCGCAAGCAGCATCCCTTTCACTGTACGAAGCTTCCATTGCTGAGAAACATGAGCAATGGATGGAGAAGTACGGACGCGTTTACCCCAACAGTGCAGAGAAGCAAAGGCGTTTAGCTATCTTCATGAAGAATGTCGAATTTGTGGAGAAATCCAACAGTGAAGGGAACAAGACTTACAAGTTGAGCATCAATGAATTTTCTGATATGACTAATGAAGAATTCATGAGACATCATACTGGATACAAAATCCCCACCAGCTCAAGTTCAACCTCTTCCGAACATAAATCTTTTCGGTACCAAAGCTTGGCTGCAACTGAGGTTCCAGCTAGCATGGACTGGAGGGAGCAAGGAGCTGTTACCCGCATAAGAAATCAAGGTCAATGTGGTGCTTGTTGGGCATTTACCGTAGTGGCAGCAGTAGAAGGGCTAATCCAAATCAAAACTGGCCAATTGATCCCGCTGTCCGAGCAACAACTTGTCGAATGTGATTACAACAACAATGGCTGCAACGGTGGCAGTGAAGTGAACGCATTTAAATACATAATACAAAATGGAGGAATCGCTAGTGAAGAAAATTACCAATACCAGAGCACAGACATGGGAACATGTGACACTAACAAGGAAAGTGACCATGCTGCCCAGATCACTGGTTATGAAATAGTCCCTTCCAGAAGTGAAGATGATCTACTCAAGGCTGTGTCCAAGCAACCAGTCTCGGTTAGCATTGATGCTTCTGGTGAAGCGTTTCAGCATTACAGTAGTGGGGTGTTCTCCGGTAATTGTGGGACGAACCTCCATCATGCTGTTGCAGCCATTGGGTACGGAACAACTGAAGGTGAAATCGACTATTGGTTATTGAAGAATTCGTGGGGTGAGACTTGGGGTGAAAATGGCTATATGAAAATTCTTAGAAACGTTGATGCCCCGGAAGGTATGTGTGGCCTTGCTATCAGAGCTTCCTATCCGACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

345

Amino Acids

38.06

Weight (kDa)

5.13

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 95 2.1e-21 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 128 - 344 3.4e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 367
AccII CGCG 1 cut(s) 141
AciI CCGC 2 cut(s) 424, 521
AclI AACGTT 1 cut(s) 978
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 5 cut(s) 200, 257, 281, 925, 966
AcuI CTGAAG 1 cut(s) 915
AfaI GTAC 4 cut(s) 89, 134, 359, 884
AfiI CCNNNNNNNGG 1 cut(s) 367
AflIII ACRYGT 2 cut(s) 139, 668
AgsI TTSAA 3 cut(s) 11, 330, 922
AluBI AGCT 7 cut(s) 95, 179, 321, 366, 389, 416, 1019
AluI AGCT 7 cut(s) 95, 179, 321, 366, 389, 416, 1019
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 3 cut(s) 283, 781, 932
AlwI GGATC 1 cut(s) 511
AoxI GGCC 2 cut(s) 508, 1003
ApeKI GCWGC 6 cut(s) 71, 371, 476, 567, 698, 872
ApoI RAATTY 5 cut(s) 200, 257, 281, 925, 966
Asp700I GAANNNNTTC 1 cut(s) 807
Asp718I GGTACC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 989
AsuHPI GGTGA 5 cut(s) 37, 812, 911, 947, 959
AsuNHI GCTAGC 1 cut(s) 389
BalI TGGCCA 1 cut(s) 510
BanI GGYRCC 1 cut(s) 357
BarI GAAGNNNNNNTAC 2 cut(s) 732, 764
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 6 cut(s) 83, 358, 488, 554, 685, 884
BccI CCATC 2 cut(s) 118, 867
BciVI GTATCC 1 cut(s) 296
BcnI CCSGG 1 cut(s) 989
BcoDI GTCTC 3 cut(s) 283, 781, 932
BfaI CTAG 2 cut(s) 390, 627
BfuI GTATCC 1 cut(s) 296
BisI GCNGC 6 cut(s) 72, 372, 477, 568, 699, 873
BlsI GCNGC 6 cut(s) 73, 373, 478, 569, 700, 874
Bme1390I CCNGG 1 cut(s) 989
BmiI GGNNCC 2 cut(s) 359, 384
BmrFI CCNGG 1 cut(s) 989
BmsI GCATC 4 cut(s) 83, 258, 781, 973
BmtI GCTAGC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 421
BpuEI CTTGAG 2 cut(s) 307, 737
BpuMI CCSGG 1 cut(s) 989
BsaJI CCNNGG 2 cut(s) 48, 987
BsaWI WCCGGW 1 cut(s) 836
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 6 cut(s) 45, 304, 404, 511, 715, 773
Bse3DI GCAATG 2 cut(s) 99, 125
BseDI CCNNGG 2 cut(s) 48, 987
BseGI GGATG 2 cut(s) 74, 129
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMI GCAATG 2 cut(s) 99, 125
BseMII CTCAG 2 cut(s) 96, 369
BseNI ACTGG 6 cut(s) 45, 304, 404, 511, 715, 773
BseXI GCAGC 6 cut(s) 83, 358, 488, 554, 685, 884
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 510, 1005
BshNI GGYRCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 2 cut(s) 837, 989
BslFI GGGAC 2 cut(s) 710, 862
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 3 cut(s) 283, 781, 932
BsmFI GGGAC 2 cut(s) 710, 862
BsnI GGCC 2 cut(s) 510, 1005
Bsp1286I GDGCHC 1 cut(s) 656
Bsp143I GATC 3 cut(s) 516, 705, 745
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 2 cut(s) 424, 521
BspANI GGCC 2 cut(s) 510, 1005
BspCNI CTCAG 2 cut(s) 97, 370
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 2 cut(s) 186, 285
BspLI GGNNCC 2 cut(s) 359, 384
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 357
BsrDI GCAATG 2 cut(s) 99, 125
BsrI ACTGG 6 cut(s) 45, 304, 404, 511, 715, 773
BssECI CCNNGG 2 cut(s) 48, 987
BssMI GATC 3 cut(s) 516, 705, 745
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 6 cut(s) 87, 155, 221, 469, 575, 821
Bst6I CTCTTC 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 69, 391
BstDEI CTNAG 3 cut(s) 105, 378, 971
BstDSI CCRYGG 1 cut(s) 48
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 2 cut(s) 74, 129
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 3 cut(s) 519, 708, 748
BstMAI GTCTC 3 cut(s) 283, 781, 932
BstMBI GATC 3 cut(s) 516, 705, 745
BstMWI GCNNNNNNNGC 7 cut(s) 68, 101, 458, 529, 576, 872, 1016
BstNSI RCATGY 1 cut(s) 672
BstPI GGTNACC 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 987
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 6 cut(s) 83, 358, 488, 554, 685, 884
BstXI CCANNNNNNTGG 1 cut(s) 710
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 2 cut(s) 510, 1005
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 74, 129
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 6 cut(s) 38, 83, 160, 226, 586, 708
Cac8I GCNNGC 2 cut(s) 69, 391
CciI TCATGA 2 cut(s) 186, 285
CseI GACGC 1 cut(s) 147
Csp6I GTAC 4 cut(s) 88, 133, 358, 883
CviAII CATG 9 cut(s) 49, 113, 187, 286, 394, 661, 669, 695, 863
CviQI GTAC 4 cut(s) 88, 133, 358, 883
DdeI CTNAG 3 cut(s) 105, 378, 971
DpnI GATC 3 cut(s) 518, 707, 747
DpnII GATC 3 cut(s) 516, 705, 745
DraI TTTAAA 1 cut(s) 598
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 915
Eco91I GGTNACC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 2 cut(s) 281, 925
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 9 cut(s) 52, 116, 190, 289, 397, 664, 672, 698, 866
FaqI GGGAC 2 cut(s) 710, 862
FatI CATG 9 cut(s) 48, 112, 186, 285, 393, 660, 668, 694, 862
FauI CCCGC 2 cut(s) 431, 528
Fnu4HI GCNGC 6 cut(s) 72, 372, 477, 568, 699, 873
FokI GGATG 2 cut(s) 61, 136
Fsp4HI GCNGC 6 cut(s) 72, 372, 477, 568, 699, 873
FspBI CTAG 2 cut(s) 390, 627
GluI GCNGC 6 cut(s) 72, 372, 477, 568, 699, 873
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 2 cut(s) 510, 1005
HapII CCGG 2 cut(s) 837, 989
HgaI GACGC 1 cut(s) 147
Hin1II CATG 9 cut(s) 52, 116, 190, 289, 397, 664, 672, 698, 866
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 2 cut(s) 93, 364
HinfI GANTC 1 cut(s) 621
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 2 cut(s) 837, 989
HphI GGTGA 5 cut(s) 37, 812, 911, 947, 959
Hpy166II GTNNAC 3 cut(s) 19, 145, 589
Hpy188I TCNGA 5 cut(s) 265, 340, 529, 1016, 1029
Hpy188III TCNNGA 3 cut(s) 187, 286, 732
Hpy8I GTNNAC 3 cut(s) 19, 145, 589
HpyAV CCTTC 5 cut(s) 218, 479, 738, 890, 986
HpyCH4III ACNGT 6 cut(s) 87, 155, 221, 469, 575, 821
HpyCH4IV ACGT 1 cut(s) 978
HpyCH4V TGCA 5 cut(s) 158, 374, 570, 872, 1034
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 101, 458, 529, 576, 872, 1016
HpyF3I CTNAG 3 cut(s) 105, 378, 971
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 9 cut(s) 52, 116, 190, 289, 397, 664, 672, 698, 866
KpnI GGTACC 1 cut(s) 361
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 516, 705, 745
LmnI GCTCC 2 cut(s) 406, 413
Lsp1109I GCAGC 6 cut(s) 83, 358, 488, 554, 685, 884
LweI GCATC 4 cut(s) 83, 258, 781, 973
MaeI CTAG 2 cut(s) 390, 627
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 5 cut(s) 31, 43, 418, 671, 689
MalI GATC 3 cut(s) 518, 707, 747
MboI GATC 3 cut(s) 516, 705, 745
MboII GAAGA 7 cut(s) 175, 202, 290, 327, 644, 752, 934
MfeI CAATTG 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 656
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 8 cut(s) 200, 257, 281, 512, 637, 841, 925, 966
MluI ACGCGT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 510
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 343, 373, 396, 611, 866
Mox20I TGGCCA 1 cut(s) 510
MroXI GAANNNNTTC 1 cut(s) 807
MscI TGGCCA 1 cut(s) 510
MseI TTAA 2 cut(s) 18, 597
MslI CAYNNNNRTG 1 cut(s) 659
Msp20I TGGCCA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 2 cut(s) 837, 989
MspR9I CCNGG 1 cut(s) 989
MunI CAATTG 1 cut(s) 512
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 7 cut(s) 68, 101, 458, 529, 576, 872, 1016
NciI CCSGG 1 cut(s) 989
NcoI CCATGG 1 cut(s) 48
NdeII GATC 3 cut(s) 516, 705, 745
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 9 cut(s) 52, 116, 190, 289, 397, 664, 672, 698, 866
NlaIV GGNNCC 2 cut(s) 359, 384
NmuCI GTSAC 3 cut(s) 43, 671, 689
NspI RCATGY 1 cut(s) 672
PagI TCATGA 2 cut(s) 186, 285
PciI ACATGT 1 cut(s) 668
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 1 cut(s) 621
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 6 cut(s) 73, 373, 478, 569, 700, 874
PscI ACATGT 1 cut(s) 668
Psp1406I AACGTT 1 cut(s) 978
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 359, 384
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
RsaI GTAC 4 cut(s) 89, 134, 359, 884
RsaNI GTAC 4 cut(s) 88, 133, 358, 883
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 2 cut(s) 18, 597
SatI GCNGC 6 cut(s) 72, 372, 477, 568, 699, 873
Sau3AI GATC 3 cut(s) 516, 705, 745
ScrFI CCNGG 1 cut(s) 989
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 4 cut(s) 83, 258, 781, 973
SmiI ATTTAAAT 1 cut(s) 598
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 322, 752
SmoI CTYRAG 2 cut(s) 322, 752
Sse9I AATT 8 cut(s) 200, 257, 281, 512, 637, 841, 925, 966
SsiI CCGC 2 cut(s) 424, 521
SspMI CTAG 2 cut(s) 390, 627
StyD4I CCNGG 1 cut(s) 987
StyI CCWWGG 1 cut(s) 48
SwaI ATTTAAAT 1 cut(s) 598
TaaI ACNGT 6 cut(s) 87, 155, 221, 469, 575, 821
TaiI ACGT 1 cut(s) 981
TaqI TCGA 3 cut(s) 198, 543, 906
TasI AATT 8 cut(s) 200, 257, 281, 512, 637, 841, 925, 966
TfiI GAWTC 1 cut(s) 621
Tru1I TTAA 2 cut(s) 18, 597
Tru9I TTAA 2 cut(s) 18, 597
TscAI CASTG 6 cut(s) 45, 90, 160, 226, 586, 715
TseFI GTSAC 3 cut(s) 43, 671, 689
TseI GCWGC 6 cut(s) 71, 371, 476, 567, 698, 872
Tsp45I GTSAC 3 cut(s) 43, 671, 689
TspDTI ATGAA 7 cut(s) 175, 203, 270, 274, 291, 732, 977
TspGWI ACGGA 2 cut(s) 150, 900
TspRI CASTG 6 cut(s) 45, 90, 160, 226, 586, 715
Van91I CCANNNNNTGG 1 cut(s) 367
XapI RAATTY 5 cut(s) 200, 257, 281, 925, 966
XceI RCATGY 1 cut(s) 672
XcmI CCANNNNNNNNNTGG 2 cut(s) 55, 503
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 2 cut(s) 390, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.