Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Reverse (-)

13145003 .. 13145974

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20001.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCAAGGCTCAAAAACAAAAACCCGGACGAACCAGAAGTTTCTGGTGAGTTGGTGCACTTTGAGTGTGAGTTGCAGGCTCATCGCGATGCAACTTCAGCTCAACTGGCGGAGATGCGCAAAGAGATGGCATCGTCTTTTGCCGATTTCAGATCTACGTTAATGGAGGAGCTTAAGGGACAGTTTTCTTCGTTATTGGAAGGTCAAATCTCACCTCCGGACCCTACTGCAGGCTCACAACTCGGTGGCTCAGTCCGATTTGGTACTGTGAGCTCCCCAATCGTCACTACTTGGGTCAGGGAACAGCTTGAAGGCTCTTCTTCCTCCACTCGTGGCAGATCTGAGGGTCTCTCTACATTTTCACTTGGATCTGAGGGTAATTCTCTTGGAAACTTGTTTACTACTGCTAGTACCGGTGTTGTTAGTCATTGTTCTCATGCTAGTAGTATTGCTGTGCCTATGAACTGGAATACAACTGTTGTTGGAAGTGGTGGTCAATGGTTGAGTCGGGATAAGGATTATGTTGTTGGTGTTCCGAATATGTTTGGTGGTGTTGATTCTCTGCAGGGAAACCCAGATTTAGCTTCATTTGGGGGTTCACAAACTTCACAGCGTGCTGCTATTGCTTTTGGTTACGTTAACCCCACTTCTGTGCCAAAATCACAGCCACTAGTGCCCCAAAGCCAAAATCCTTTTTCTAAGTCATACATAGGGCCAAACCAATATTCTTCCACCAACGTGTTTACCTCCCAGCCACAAGGTGGCAAATGGGCTGCAAAGCACGGGCACGGCACTAGCACGGCACGTTTAAAAGCGGCCCGGCACGGCCCAAGTTCGTTAACGGCCCGGCCCGGTCCAAGCACGTTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

291

Amino Acids

30.63

Weight (kDa)

7.84

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	761
AccII	CGCG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	2 cut(s)	110, 815
AclWI	GGATC	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	81
AdeI	CACNNNGTG	2 cut(s)	614, 761
AfaI	GTAC	2 cut(s)	265, 412
AfiI	CCNNNNNNNGG	2 cut(s)	230, 761
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	738
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	311
AhlI	ACTAGT	1 cut(s)	670
AjuI	GAANNNNNNNTTGG	2 cut(s)	709, 741
AleI	CACNNNNGTG	2 cut(s)	650, 737
AluBI	AGCT	5 cut(s)	101, 172, 273, 307, 584
AluI	AGCT	5 cut(s)	101, 172, 273, 307, 584
Alw21I	GWGCWC	2 cut(s)	60, 275
Alw26I	GTCTC	1 cut(s)	353
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	376
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	5 cut(s)	713, 816, 826, 843, 848
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	617, 773
AsiGI	ACCGGT	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	7 cut(s)	220, 713, 817, 827, 844, 849, 854
AsuC2I	CCSGG	4 cut(s)	26, 820, 847, 852
AsuHPI	GGTGA	2 cut(s)	59, 204
AvaII	GGWCC	2 cut(s)	220, 854
BaeGI	GKGCMC	3 cut(s)	60, 678, 789
BanII	GRGCYC	1 cut(s)	275
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	60, 275
BbvI	GCAGC	2 cut(s)	604, 760
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	4 cut(s)	805, 816, 841, 858
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BcnI	CCSGG	4 cut(s)	26, 820, 847, 852
BcoDI	GTCTC	1 cut(s)	353
BcuI	ACTAGT	1 cut(s)	670
BfaI	CTAG	4 cut(s)	408, 441, 671, 795
BfmI	CTRYAG	2 cut(s)	228, 563
BfrI	CTTAAG	1 cut(s)	173
BglII	AGATCT	2 cut(s)	152, 338
BisI	GCNGC	3 cut(s)	618, 774, 816
BlsI	GCNGC	3 cut(s)	619, 775, 817
Bme1390I	CCNGG	4 cut(s)	26, 820, 847, 852
Bme18I	GGWCC	2 cut(s)	220, 854
BmgT120I	GGNCC	7 cut(s)	220, 713, 817, 827, 844, 849, 854
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	4 cut(s)	26, 820, 847, 852
BmsI	GCATC	3 cut(s)	79, 105, 140
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpuMI	CCSGG	4 cut(s)	26, 820, 847, 852
BsaI	GGTCTC	1 cut(s)	353
BsaWI	WCCGGW	2 cut(s)	217, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 761
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	111, 470
BseAI	TCCGGA	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	230, 761
BseMII	CTCAG	3 cut(s)	264, 333, 363
BseNI	ACTGG	2 cut(s)	111, 470
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	3 cut(s)	60, 678, 789
BseXI	GCAGC	2 cut(s)	604, 760
BseYI	CCCAGC	1 cut(s)	750
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	5 cut(s)	715, 818, 828, 845, 850
BshTI	ACCGGT	1 cut(s)	413
BsiHKAI	GWGCWC	2 cut(s)	60, 275
BsiSI	CCGG	6 cut(s)	26, 218, 414, 820, 847, 852
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	230, 761
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	5 cut(s)	715, 818, 828, 845, 850
Bso31I	GGTCTC	1 cut(s)	353
Bsp1286I	GDGCHC	4 cut(s)	60, 275, 678, 789
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	152, 338, 368
Bsp68I	TCGCGA	1 cut(s)	87
BspACI	CCGC	2 cut(s)	110, 815
BspANI	GGCC	5 cut(s)	715, 818, 828, 845, 850
BspCNI	CTCAG	3 cut(s)	263, 334, 364
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	2 cut(s)	232, 567
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	322
BspTI	CTTAAG	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	111, 470
BssAI	RCCGGY	1 cut(s)	413
BssMI	GATC	3 cut(s)	152, 338, 368
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	183, 268, 478
Bst6I	CTCTTC	1 cut(s)	322
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	78, 232, 615
BstDEI	CTNAG	4 cut(s)	250, 342, 372, 699
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	155, 341, 371
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	3 cut(s)	152, 338, 368
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 107, 623, 673
BstSCI	CCNGG	4 cut(s)	24, 818, 845, 850
BstSFI	CTRYAG	2 cut(s)	228, 563
BstSLI	GKGCMC	3 cut(s)	60, 678, 789
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	604, 760
BstX2I	RGATCY	3 cut(s)	152, 338, 368
BstYI	RGATCY	3 cut(s)	152, 338, 368
BsuRI	GGCC	5 cut(s)	715, 818, 828, 845, 850
BtgZI	GCGATG	2 cut(s)	68, 102
BtuMI	TCGCGA	1 cut(s)	87
Cac8I	GCNNGC	3 cut(s)	78, 232, 615
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	7 cut(s)	220, 713, 817, 827, 844, 849, 854
Csp6I	GTAC	2 cut(s)	264, 411
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	1 cut(s)	437
CviQI	GTAC	2 cut(s)	264, 411
DdeI	CTNAG	4 cut(s)	250, 342, 372, 699
DpnI	GATC	3 cut(s)	154, 340, 370
DpnII	GATC	3 cut(s)	152, 338, 368
DraI	TTTAAA	1 cut(s)	810
DraIII	CACNNNGTG	2 cut(s)	614, 761
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
EciI	GGCGGA	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	2 cut(s)	220, 854
Eco53kI	GAGCTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	273
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	275
FaeI	CATG	1 cut(s)	440
FaiI	YATR	6 cut(s)	438, 461, 522, 542, 706, 710
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	618, 774, 816
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	3 cut(s)	618, 774, 816
FspBI	CTAG	4 cut(s)	408, 441, 671, 795
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	3 cut(s)	618, 774, 816
GsaI	CCCAGC	1 cut(s)	754
HaeIII	GGCC	5 cut(s)	715, 818, 828, 845, 850
HapII	CCGG	6 cut(s)	26, 218, 414, 820, 847, 852
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	2 cut(s)	640, 840
HindII	GTYRAC	2 cut(s)	640, 840
HinfI	GANTC	2 cut(s)	505, 557
HpaI	GTTAAC	2 cut(s)	640, 840
HpaII	CCGG	6 cut(s)	26, 218, 414, 820, 847, 852
HphI	GGTGA	2 cut(s)	59, 204
Hpy166II	GTNNAC	6 cut(s)	58, 399, 599, 640, 744, 840
Hpy188I	TCNGA	5 cut(s)	152, 257, 343, 373, 537
Hpy188III	TCNNGA	3 cut(s)	86, 218, 509
Hpy8I	GTNNAC	6 cut(s)	58, 399, 599, 640, 744, 840
HpyAV	CCTTC	2 cut(s)	194, 305
HpyCH4III	ACNGT	3 cut(s)	183, 268, 478
HpyCH4IV	ACGT	5 cut(s)	158, 636, 738, 805, 863
HpyCH4V	TGCA	6 cut(s)	58, 76, 92, 230, 565, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 107, 623, 673
HpyF3I	CTNAG	4 cut(s)	250, 342, 372, 699
HpySE526I	ACGT	5 cut(s)	158, 636, 738, 805, 863
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	1 cut(s)	118
Kpn2I	TCCGGA	1 cut(s)	217
KspAI	GTTAAC	2 cut(s)	640, 840
Kzo9I	GATC	3 cut(s)	152, 338, 368
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	2 cut(s)	169, 278
Lsp1109I	GCAGC	2 cut(s)	604, 760
LweI	GCATC	3 cut(s)	79, 105, 140
MaeI	CTAG	4 cut(s)	408, 441, 671, 795
MaeII	ACGT	5 cut(s)	158, 636, 738, 805, 863
MaeIII	GTNAC	2 cut(s)	283, 632
MalI	GATC	3 cut(s)	154, 340, 370
MboI	GATC	3 cut(s)	152, 338, 368
MboII	GAAGA	4 cut(s)	180, 309, 312, 720
MflI	RGATCY	3 cut(s)	152, 338, 368
MhlI	GDGCHC	4 cut(s)	60, 275, 678, 789
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	1 cut(s)	514
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	6 cut(s)	160, 225, 334, 337, 367, 757
MroI	TCCGGA	1 cut(s)	217
MseI	TTAA	5 cut(s)	161, 174, 639, 809, 839
MslI	CAYNNNNRTG	3 cut(s)	87, 650, 737
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	6 cut(s)	26, 218, 414, 820, 847, 852
MspR9I	CCNGG	4 cut(s)	26, 820, 847, 852
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	98, 107, 623, 673
NciI	CCSGG	4 cut(s)	26, 820, 847, 852
NdeII	GATC	3 cut(s)	152, 338, 368
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	283
NruI	TCGCGA	1 cut(s)	87
NsbI	TGCGCA	1 cut(s)	119
OliI	CACNNNNGTG	2 cut(s)	650, 737
PciSI	GCTCTTC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	761
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	619, 775, 817
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	750
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	7 cut(s)	220, 713, 817, 827, 844, 849, 854
PstI	CTGCAG	2 cut(s)	232, 567
PsuI	RGATCY	3 cut(s)	152, 338, 368
RruI	TCGCGA	1 cut(s)	87
RsaI	GTAC	2 cut(s)	265, 412
RsaNI	GTAC	2 cut(s)	264, 411
RseI	CAYNNNNRTG	3 cut(s)	87, 650, 737
SacI	GAGCTC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	5 cut(s)	161, 174, 639, 809, 839
SatI	GCNGC	3 cut(s)	618, 774, 816
Sau3AI	GATC	3 cut(s)	152, 338, 368
Sau96I	GGNCC	7 cut(s)	220, 713, 817, 827, 844, 849, 854
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	4 cut(s)	26, 820, 847, 852
SduI	GDGCHC	4 cut(s)	60, 275, 678, 789
SfaNI	GCATC	3 cut(s)	79, 105, 140
SfcI	CTRYAG	2 cut(s)	228, 563
SinI	GGWCC	2 cut(s)	220, 854
SmiMI	CAYNNNNRTG	3 cut(s)	87, 650, 737
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	670
Sse9I	AATT	1 cut(s)	379
SsiI	CCGC	2 cut(s)	110, 815
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	4 cut(s)	408, 441, 671, 795
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	4 cut(s)	24, 818, 845, 850
TaaI	ACNGT	3 cut(s)	183, 268, 478
TaiI	ACGT	5 cut(s)	161, 639, 741, 808, 866
TasI	AATT	1 cut(s)	379
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	5 cut(s)	161, 174, 639, 809, 839
Tru9I	TTAA	5 cut(s)	161, 174, 639, 809, 839
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	617, 773
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	476, 576
Van91I	CCANNNNNTGG	1 cut(s)	761
Vha464I	CTTAAG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	220, 854
XagI	CCTNNNNNAGG	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	758
XspI	CTAG	4 cut(s)	408, 441, 671, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.