Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006394

Physical Location & Seq

Genomic Coordinates Forward (+)

27467615 .. 27468601

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGAAATTGAAGCAGGTTACGAAACCCTCATCTTCTGATGAGCCAACGGTTTTTGGTGAGCTCTCGCATCTAGAGGATGAGTTACAGGCTCATCAAGATGCCACCAGTGCTTGTTTGGACTCGACGGAGATCCAACCACCACCAGAGTTAGCCGGAACCGCTATCACTCAGCCAGATGGATCTGTGCGTTTTGGTTTTATTCCGCCTCCTTTGGTTGTTCAACAGCGCGTGGTGTCAAGCTCCACAGATGGCGCTTCTGCATCATCAGCTACACTGGCTAGATCTGATGGTAGTTCTCTTAATCCTATTCCTCCTCAAAATTTTACTGCTAATTTTGGGTTGAATATTCCTCAAAATTTTAATGCTAATTTTGGGGTGAATACTATGGTAGGGAGAGCTATCACTGAGTCTAGGGCATTTTGTGATTCGGTTCATAACTCTGAGCATGTTAATGTGGGAGTGCAACATGGTAAAATATCATCTAAGATTGGTACTAGTGAGAATTACATTGGACCTTTGCCAAATATTTTTGGTGGAGTGGCTTCACAGGTTGTTCAGCAACAGAAGGGAGGATCTCAACAGATTGGCAATTCTGTTTTTCCTACCTTTAATGTGCAAAATAACATGCATAGGAGCTCTGTTGCAGGCATGAGCTGCCCTGCAAACCAAAATCCCTTTTCTATGTCCTATTCTGGTCCACATGCTTCATCCTCTTTCAGTTTCACAAACAATCCCAACACCTTCAATACATCATCTCATTTGTCATCCACAGCCCCCCAAATGTCTCACACTCCCAATGTTAACTCCTACACCTCCCAGCCAAAGCCAAACCATAGCTCATTCCCTAATATTCATATTAATGCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

291

Amino Acids

30.7

Weight (kDa)

6.23

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006394)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20001 FvH4_3g30421 FvH4_3g37282 FvH4_4g08763 FvH4_5g33112 FvH4_6g34810
rosa_chinensis	RchiOBHm_Chr1g0321691 RchiOBHm_Chr2g0141281
rosa_laevigata	RLG00000030445
rosa_multiflora	Rmu_sc0001551.1_g000012 Rmu_sc0003593.1_g000002 Rmu_sc0005979.1_g000021 Rmu_sc0006601.1_g000004 Rmu_sc0014259.1_g000015 Rmu_sc0014573.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109690 Rroxscaffold_3G00218070 Rroxscaffold_4G00305750
rosa_rugosa	Rorug05G0498400
rosa_samantha	Rh1DG124100 Rh2AG243500 Rh2DG252000 Rh4CG084100 Rh6AG070400 Rh6BG224300 Rh6CG309200 Rh6DG293000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	7
AccII	CGCG	1 cut(s)	231
AciI	CCGC	2 cut(s)	162, 206
AclWI	GGATC	3 cut(s)	127, 190, 583
AcsI	RAATTY	2 cut(s)	322, 358
AfaI	GTAC	1 cut(s)	496
AgsI	TTSAA	4 cut(s)	13, 224, 346, 748
AhlI	ACTAGT	1 cut(s)	497
AluBI	AGCT	7 cut(s)	64, 243, 272, 401, 639, 657, 840
AluI	AGCT	7 cut(s)	64, 243, 272, 401, 639, 657, 840
Alw21I	GWGCWC	2 cut(s)	66, 641
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	3 cut(s)	127, 190, 583
ApeKI	GCWGC	1 cut(s)	657
ApoI	RAATTY	2 cut(s)	322, 358
AseI	ATTAAT	1 cut(s)	861
AspLEI	GCGC	2 cut(s)	231, 257
AspS9I	GGNCC	2 cut(s)	515, 698
AsuHPI	GGTGA	3 cut(s)	16, 71, 391
AvaII	GGWCC	2 cut(s)	515, 698
BanII	GRGCYC	2 cut(s)	66, 641
Bbv12I	GWGCWC	2 cut(s)	66, 641
BbvI	GCAGC	1 cut(s)	644
BccI	CCATC	3 cut(s)	173, 245, 284
BcoDI	GTCTC	1 cut(s)	792
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	4 cut(s)	74, 282, 414, 498
BfoI	RGCGCY	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	7
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	1 cut(s)	658
BlsI	GCNGC	1 cut(s)	659
Bme18I	GGWCC	2 cut(s)	515, 698
BmgT120I	GGNCC	2 cut(s)	515, 698
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	3 cut(s)	79, 91, 272
Bse1I	ACTGG	2 cut(s)	108, 282
BseGI	GGATG	3 cut(s)	85, 710, 767
BseMII	CTCAG	3 cut(s)	185, 399, 435
BseNI	ACTGG	2 cut(s)	108, 282
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	644
BseYI	CCCAGC	1 cut(s)	819
Bsh1236I	CGCG	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	66, 641
BsiSI	CCGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	792
Bsp1286I	GDGCHC	2 cut(s)	66, 641
Bsp143I	GATC	4 cut(s)	132, 182, 284, 575
BspACI	CCGC	2 cut(s)	162, 206
BspCNI	CTCAG	3 cut(s)	184, 400, 436
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	3 cut(s)	127, 190, 583
BsrI	ACTGG	2 cut(s)	108, 282
BssMI	GATC	4 cut(s)	132, 182, 284, 575
Bst4CI	ACNGT	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	657
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	4 cut(s)	171, 408, 444, 486
BstF5I	GGATG	3 cut(s)	85, 710, 767
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	231, 257
BstKTI	GATC	4 cut(s)	135, 185, 287, 578
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	4 cut(s)	132, 182, 284, 575
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 161, 269, 278, 657
BstNSI	RCATGY	3 cut(s)	452, 631, 707
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	644
BstX2I	RGATCY	4 cut(s)	132, 182, 284, 575
BstYI	RGATCY	4 cut(s)	132, 182, 284, 575
BtsCI	GGATG	3 cut(s)	85, 710, 767
BtsIMutI	CAGTG	3 cut(s)	115, 275, 405
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	649
CfoI	GCGC	2 cut(s)	231, 257
Cfr13I	GGNCC	2 cut(s)	515, 698
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	5 cut(s)	449, 470, 628, 652, 704
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	4 cut(s)	171, 408, 444, 486
DpnI	GATC	4 cut(s)	134, 184, 286, 577
DpnII	GATC	4 cut(s)	132, 182, 284, 575
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	2 cut(s)	64, 639
Eco24I	GRGCYC	2 cut(s)	66, 641
Eco47I	GGWCC	2 cut(s)	515, 698
Eco53kI	GAGCTC	2 cut(s)	64, 639
EcoICRI	GAGCTC	2 cut(s)	64, 639
EcoT22I	ATGCAT	1 cut(s)	633
EcoT38I	GRGCYC	2 cut(s)	66, 641
FaeI	CATG	5 cut(s)	452, 473, 631, 655, 707
FatI	CATG	5 cut(s)	448, 469, 627, 651, 703
Fnu4HI	GCNGC	1 cut(s)	658
FokI	GGATG	3 cut(s)	92, 697, 754
FriOI	GRGCYC	2 cut(s)	66, 641
Fsp4HI	GCNGC	1 cut(s)	658
FspBI	CTAG	4 cut(s)	74, 282, 414, 498
GlaI	GCGC	2 cut(s)	230, 256
GluI	GCNGC	1 cut(s)	658
GsaI	CCCAGC	1 cut(s)	823
HaeII	RGCGCY	1 cut(s)	258
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	2 cut(s)	231, 257
Hin1II	CATG	5 cut(s)	452, 473, 631, 655, 707
Hin6I	GCGC	2 cut(s)	229, 255
HinP1I	GCGC	2 cut(s)	229, 255
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HinfI	GANTC	3 cut(s)	122, 410, 428
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	3 cut(s)	16, 71, 391
Hpy166II	GTNNAC	2 cut(s)	701, 805
Hpy188I	TCNGA	3 cut(s)	40, 289, 445
Hpy188III	TCNNGA	2 cut(s)	74, 98
Hpy8I	GTNNAC	2 cut(s)	701, 805
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	562, 754
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	6 cut(s)	263, 466, 619, 631, 647, 665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 161, 269, 278, 657
HpyF3I	CTNAG	4 cut(s)	171, 408, 444, 486
Hsp92II	CATG	5 cut(s)	452, 473, 631, 655, 707
HspAI	GCGC	2 cut(s)	229, 255
KspAI	GTTAAC	1 cut(s)	805
Kzo9I	GATC	4 cut(s)	132, 182, 284, 575
LmnI	GCTCC	2 cut(s)	248, 636
Lsp1109I	GCAGC	1 cut(s)	644
LweI	GCATC	3 cut(s)	79, 91, 272
MaeI	CTAG	4 cut(s)	74, 282, 414, 498
MaeIII	GTNAC	2 cut(s)	19, 84
MalI	GATC	4 cut(s)	134, 184, 286, 577
MboI	GATC	4 cut(s)	132, 182, 284, 575
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	4 cut(s)	132, 182, 284, 575
MhlI	GDGCHC	2 cut(s)	66, 641
MluCI	AATT	7 cut(s)	8, 322, 334, 358, 370, 505, 592
MlyI	GAGTC	2 cut(s)	116, 419
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	9 cut(s)	40, 70, 219, 324, 327, 363, 566, 724, 826
Mph1103I	ATGCAT	1 cut(s)	633
MseI	TTAA	6 cut(s)	303, 363, 453, 612, 804, 861
MslI	CAYNNNNRTG	3 cut(s)	99, 453, 861
MspI	CCGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	5 cut(s)	110, 161, 269, 278, 657
NdeII	GATC	4 cut(s)	132, 182, 284, 575
NlaIII	CATG	5 cut(s)	452, 473, 631, 655, 707
NlaIV	GGNNCC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	633
NspI	RCATGY	3 cut(s)	452, 631, 707
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	659
PleI	GAGTC	2 cut(s)	116, 418
PpsI	GAGTC	2 cut(s)	116, 418
PshBI	ATTAAT	1 cut(s)	861
Psp124BI	GAGCTC	2 cut(s)	66, 641
PspFI	CCCAGC	1 cut(s)	819
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	515, 698
PsuI	RGATCY	4 cut(s)	132, 182, 284, 575
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
RseI	CAYNNNNRTG	3 cut(s)	99, 453, 861
SacI	GAGCTC	2 cut(s)	66, 641
SaqAI	TTAA	6 cut(s)	303, 363, 453, 612, 804, 861
SatI	GCNGC	1 cut(s)	658
Sau3AI	GATC	4 cut(s)	132, 182, 284, 575
Sau96I	GGNCC	2 cut(s)	515, 698
SchI	GAGTC	2 cut(s)	116, 419
SduI	GDGCHC	2 cut(s)	66, 641
SfaNI	GCATC	3 cut(s)	79, 91, 272
SinI	GGWCC	2 cut(s)	515, 698
SmiMI	CAYNNNNRTG	3 cut(s)	99, 453, 861
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	7 cut(s)	8, 322, 334, 358, 370, 505, 592
SsiI	CCGC	2 cut(s)	162, 206
SspI	AATATT	3 cut(s)	349, 529, 853
SspMI	CTAG	4 cut(s)	74, 282, 414, 498
SstI	GAGCTC	2 cut(s)	66, 641
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	125
TasI	AATT	7 cut(s)	8, 322, 334, 358, 370, 505, 592
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	6 cut(s)	303, 363, 453, 612, 804, 861
Tru9I	TTAA	6 cut(s)	303, 363, 453, 612, 804, 861
TscAI	CASTG	3 cut(s)	115, 282, 412
TseI	GCWGC	1 cut(s)	657
TspDTI	ATGAA	3 cut(s)	425, 699, 845
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	3 cut(s)	115, 282, 412
VpaK11BI	GGWCC	2 cut(s)	515, 698
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	2 cut(s)	322, 358
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	3 cut(s)	452, 631, 707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XspI	CTAG	4 cut(s)	74, 282, 414, 498
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.